Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SKA3Q8IX90 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC19.93■□□□□ 0.78
SKA3Q8IX90 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.93■□□□□ 0.78
SKA3Q8IX90 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SKA3Q8IX90 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SKA3Q8IX90 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC19.93■□□□□ 0.78
SKA3Q8IX90 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC19.93■□□□□ 0.78
SKA3Q8IX90 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SKA3Q8IX90 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
SKA3Q8IX90 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SKA3Q8IX90 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SKA3Q8IX90 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
SKA3Q8IX90 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
SKA3Q8IX90 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SKA3Q8IX90 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SKA3Q8IX90 LSM4-201ENST00000252816 986 ntTSL 2 BASIC19.92■□□□□ 0.78
SKA3Q8IX90 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SKA3Q8IX90 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC19.92■□□□□ 0.78
SKA3Q8IX90 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC19.92■□□□□ 0.78
SKA3Q8IX90 EXOG-217ENST00000630638 197 ntTSL 5 BASIC19.92■□□□□ 0.78
SKA3Q8IX90 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SKA3Q8IX90 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC19.92■□□□□ 0.78
SKA3Q8IX90 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
SKA3Q8IX90 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SKA3Q8IX90 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SKA3Q8IX90 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SKA3Q8IX90 CD72-202ENST00000378430 585 ntTSL 3 BASIC19.91■□□□□ 0.78
SKA3Q8IX90 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
SKA3Q8IX90 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
SKA3Q8IX90 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
SKA3Q8IX90 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
SKA3Q8IX90 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC19.9■□□□□ 0.78
SKA3Q8IX90 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SKA3Q8IX90 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SKA3Q8IX90 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SKA3Q8IX90 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC19.9■□□□□ 0.78
SKA3Q8IX90 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC19.9■□□□□ 0.78
SKA3Q8IX90 KRT16P3-201ENST00000439127 1283 ntBASIC19.9■□□□□ 0.78
SKA3Q8IX90 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SKA3Q8IX90 AC005703.6-201ENST00000623265 1329 ntBASIC19.9■□□□□ 0.78
SKA3Q8IX90 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC19.9■□□□□ 0.78
SKA3Q8IX90 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SKA3Q8IX90 USF2-207ENST00000595068 1612 ntTSL 5 BASIC19.9■□□□□ 0.78
SKA3Q8IX90 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SKA3Q8IX90 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SKA3Q8IX90 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SKA3Q8IX90 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.78
SKA3Q8IX90 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC19.89■□□□□ 0.77
SKA3Q8IX90 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
SKA3Q8IX90 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SKA3Q8IX90 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
SKA3Q8IX90 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC19.89■□□□□ 0.77
SKA3Q8IX90 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC19.89■□□□□ 0.77
SKA3Q8IX90 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC19.89■□□□□ 0.77
SKA3Q8IX90 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
SKA3Q8IX90 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SKA3Q8IX90 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
SKA3Q8IX90 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SKA3Q8IX90 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
SKA3Q8IX90 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
SKA3Q8IX90 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC19.88■□□□□ 0.77
SKA3Q8IX90 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SKA3Q8IX90 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC19.88■□□□□ 0.77
SKA3Q8IX90 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SKA3Q8IX90 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC19.88■□□□□ 0.77
SKA3Q8IX90 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
SKA3Q8IX90 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC19.88■□□□□ 0.77
SKA3Q8IX90 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC19.87■□□□□ 0.77
SKA3Q8IX90 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SKA3Q8IX90 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SKA3Q8IX90 TFPT-201ENST00000391757 774 ntTSL 5 BASIC19.87■□□□□ 0.77
SKA3Q8IX90 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SKA3Q8IX90 GRAMD4P7-201ENST00000578182 1232 ntBASIC19.87■□□□□ 0.77
SKA3Q8IX90 MIR6724-1-201ENST00000616420 92 ntBASIC19.87■□□□□ 0.77
SKA3Q8IX90 MIR6724-2-201ENST00000616483 92 ntBASIC19.87■□□□□ 0.77
SKA3Q8IX90 MIR6724-4-201ENST00000617390 92 ntBASIC19.87■□□□□ 0.77
SKA3Q8IX90 MIR6724-3-201ENST00000622482 92 ntBASIC19.87■□□□□ 0.77
SKA3Q8IX90 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
SKA3Q8IX90 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC19.87■□□□□ 0.77
SKA3Q8IX90 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SKA3Q8IX90 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
SKA3Q8IX90 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SKA3Q8IX90 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
SKA3Q8IX90 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
SKA3Q8IX90 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SKA3Q8IX90 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
SKA3Q8IX90 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SKA3Q8IX90 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
SKA3Q8IX90 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
SKA3Q8IX90 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC19.86■□□□□ 0.77
SKA3Q8IX90 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SKA3Q8IX90 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
SKA3Q8IX90 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
SKA3Q8IX90 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SKA3Q8IX90 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SKA3Q8IX90 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC19.85■□□□□ 0.77
SKA3Q8IX90 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SKA3Q8IX90 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
SKA3Q8IX90 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC19.85■□□□□ 0.77
SKA3Q8IX90 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms