Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
DDX28Q9NUL7 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC20.62■□□□□ 0.89
DDX28Q9NUL7 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.62■□□□□ 0.89
DDX28Q9NUL7 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
DDX28Q9NUL7 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
DDX28Q9NUL7 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
DDX28Q9NUL7 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
DDX28Q9NUL7 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
DDX28Q9NUL7 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
DDX28Q9NUL7 HYI-213ENST00000583037 1322 ntTSL 5 BASIC20.61■□□□□ 0.89
DDX28Q9NUL7 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
DDX28Q9NUL7 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC20.61■□□□□ 0.89
DDX28Q9NUL7 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
DDX28Q9NUL7 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
DDX28Q9NUL7 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
DDX28Q9NUL7 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
DDX28Q9NUL7 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
DDX28Q9NUL7 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
DDX28Q9NUL7 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
DDX28Q9NUL7 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
DDX28Q9NUL7 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
DDX28Q9NUL7 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC20.6■□□□□ 0.89
DDX28Q9NUL7 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC20.6■□□□□ 0.89
DDX28Q9NUL7 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC20.6■□□□□ 0.89
DDX28Q9NUL7 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
DDX28Q9NUL7 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
DDX28Q9NUL7 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
DDX28Q9NUL7 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
DDX28Q9NUL7 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
DDX28Q9NUL7 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC20.6■□□□□ 0.89
DDX28Q9NUL7 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
DDX28Q9NUL7 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.6■□□□□ 0.89
DDX28Q9NUL7 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
DDX28Q9NUL7 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC20.6■□□□□ 0.89
DDX28Q9NUL7 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
DDX28Q9NUL7 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
DDX28Q9NUL7 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
DDX28Q9NUL7 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
DDX28Q9NUL7 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC20.59■□□□□ 0.89
DDX28Q9NUL7 LINC00565-201ENST00000562710 2331 ntBASIC20.59■□□□□ 0.89
DDX28Q9NUL7 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
DDX28Q9NUL7 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
DDX28Q9NUL7 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
DDX28Q9NUL7 AL592293.1-201ENST00000502889 1188 ntBASIC20.59■□□□□ 0.89
DDX28Q9NUL7 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
DDX28Q9NUL7 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC20.59■□□□□ 0.89
DDX28Q9NUL7 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC20.59■□□□□ 0.89
DDX28Q9NUL7 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
DDX28Q9NUL7 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
DDX28Q9NUL7 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC20.59■□□□□ 0.89
DDX28Q9NUL7 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.59■□□□□ 0.89
DDX28Q9NUL7 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
DDX28Q9NUL7 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
DDX28Q9NUL7 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
DDX28Q9NUL7 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC20.58■□□□□ 0.89
DDX28Q9NUL7 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
DDX28Q9NUL7 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
DDX28Q9NUL7 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC20.58■□□□□ 0.88
DDX28Q9NUL7 FOXO3B-201ENST00000395675 1928 ntBASIC20.58■□□□□ 0.88
DDX28Q9NUL7 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
DDX28Q9NUL7 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
DDX28Q9NUL7 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
DDX28Q9NUL7 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
DDX28Q9NUL7 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
DDX28Q9NUL7 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
DDX28Q9NUL7 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
DDX28Q9NUL7 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC20.57■□□□□ 0.88
DDX28Q9NUL7 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
DDX28Q9NUL7 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
DDX28Q9NUL7 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
DDX28Q9NUL7 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
DDX28Q9NUL7 SLC25A24-204ENST00000569674 2357 ntBASIC20.56■□□□□ 0.88
DDX28Q9NUL7 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
DDX28Q9NUL7 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
DDX28Q9NUL7 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC20.56■□□□□ 0.88
DDX28Q9NUL7 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC20.56■□□□□ 0.88
DDX28Q9NUL7 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
DDX28Q9NUL7 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC20.56■□□□□ 0.88
DDX28Q9NUL7 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
DDX28Q9NUL7 LSR-205ENST00000427250 1606 ntTSL 2 BASIC20.56■□□□□ 0.88
DDX28Q9NUL7 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.56■□□□□ 0.88
DDX28Q9NUL7 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.56■□□□□ 0.88
DDX28Q9NUL7 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
DDX28Q9NUL7 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.56■□□□□ 0.88
DDX28Q9NUL7 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.55■□□□□ 0.88
DDX28Q9NUL7 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.55■□□□□ 0.88
DDX28Q9NUL7 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
DDX28Q9NUL7 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
DDX28Q9NUL7 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
DDX28Q9NUL7 SPCS2P3-201ENST00000500401 656 ntBASIC20.55■□□□□ 0.88
DDX28Q9NUL7 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
DDX28Q9NUL7 AC018755.3-202ENST00000596210 929 ntBASIC20.55■□□□□ 0.88
DDX28Q9NUL7 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.54■□□□□ 0.88
DDX28Q9NUL7 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
DDX28Q9NUL7 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
DDX28Q9NUL7 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
DDX28Q9NUL7 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
DDX28Q9NUL7 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.54■□□□□ 0.88
DDX28Q9NUL7 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC20.54■□□□□ 0.88
DDX28Q9NUL7 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms