Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC25.11■■□□□ 1.61
HIPK3Q9H422 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC25.11■■□□□ 1.61
HIPK3Q9H422 AC126544.1-201ENST00000580842 1059 ntBASIC25.11■■□□□ 1.61
HIPK3Q9H422 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC25.1■■□□□ 1.61
HIPK3Q9H422 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
HIPK3Q9H422 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
HIPK3Q9H422 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC25.1■■□□□ 1.61
HIPK3Q9H422 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
HIPK3Q9H422 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
HIPK3Q9H422 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC25.1■■□□□ 1.61
HIPK3Q9H422 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC25.1■■□□□ 1.61
HIPK3Q9H422 AL031602.1-201ENST00000633169 911 ntBASIC25.1■■□□□ 1.61
HIPK3Q9H422 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC25.1■■□□□ 1.61
HIPK3Q9H422 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC25.1■■□□□ 1.61
HIPK3Q9H422 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC25.1■■□□□ 1.61
HIPK3Q9H422 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
HIPK3Q9H422 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
HIPK3Q9H422 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC25.1■■□□□ 1.61
HIPK3Q9H422 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
HIPK3Q9H422 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC25.09■■□□□ 1.61
HIPK3Q9H422 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC25.09■■□□□ 1.61
HIPK3Q9H422 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC25.09■■□□□ 1.61
HIPK3Q9H422 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
HIPK3Q9H422 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC25.09■■□□□ 1.61
HIPK3Q9H422 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC25.09■■□□□ 1.61
HIPK3Q9H422 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
HIPK3Q9H422 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC25.08■■□□□ 1.61
HIPK3Q9H422 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC25.08■■□□□ 1.61
HIPK3Q9H422 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
HIPK3Q9H422 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
HIPK3Q9H422 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC25.08■■□□□ 1.61
HIPK3Q9H422 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
HIPK3Q9H422 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC25.08■■□□□ 1.61
HIPK3Q9H422 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC25.08■■□□□ 1.61
HIPK3Q9H422 NME4-202ENST00000382940 766 ntTSL 3 BASIC25.08■■□□□ 1.61
HIPK3Q9H422 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC25.08■■□□□ 1.61
HIPK3Q9H422 NME4-211ENST00000620944 1193 ntTSL 2 BASIC25.08■■□□□ 1.61
HIPK3Q9H422 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC25.08■■□□□ 1.61
HIPK3Q9H422 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
HIPK3Q9H422 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
HIPK3Q9H422 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC25.08■■□□□ 1.6
HIPK3Q9H422 VGF-203ENST00000611537 1622 ntTSL 5 BASIC25.08■■□□□ 1.6
HIPK3Q9H422 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC25.07■■□□□ 1.6
HIPK3Q9H422 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
HIPK3Q9H422 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC25.07■■□□□ 1.6
HIPK3Q9H422 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
HIPK3Q9H422 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
HIPK3Q9H422 NKILA-201ENST00000613231 537 ntTSL 4 BASIC25.07■■□□□ 1.6
HIPK3Q9H422 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC25.07■■□□□ 1.6
HIPK3Q9H422 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
HIPK3Q9H422 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC25.07■■□□□ 1.6
HIPK3Q9H422 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC25.07■■□□□ 1.6
HIPK3Q9H422 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC25.06■■□□□ 1.6
HIPK3Q9H422 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
HIPK3Q9H422 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
HIPK3Q9H422 SLC6A10P-202ENST00000431994 2058 ntBASIC25.06■■□□□ 1.6
HIPK3Q9H422 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC25.06■■□□□ 1.6
HIPK3Q9H422 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
HIPK3Q9H422 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC25.06■■□□□ 1.6
HIPK3Q9H422 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
HIPK3Q9H422 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC25.06■■□□□ 1.6
HIPK3Q9H422 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC25.06■■□□□ 1.6
HIPK3Q9H422 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
HIPK3Q9H422 SLC47A1P1-202ENST00000449666 945 ntBASIC25.06■■□□□ 1.6
HIPK3Q9H422 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC25.06■■□□□ 1.6
HIPK3Q9H422 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC25.06■■□□□ 1.6
HIPK3Q9H422 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC25.06■■□□□ 1.6
HIPK3Q9H422 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC25.06■■□□□ 1.6
HIPK3Q9H422 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC25.05■■□□□ 1.6
HIPK3Q9H422 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC25.05■■□□□ 1.6
HIPK3Q9H422 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
HIPK3Q9H422 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
HIPK3Q9H422 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC25.05■■□□□ 1.6
HIPK3Q9H422 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC25.05■■□□□ 1.6
HIPK3Q9H422 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC25.05■■□□□ 1.6
HIPK3Q9H422 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC25.05■■□□□ 1.6
HIPK3Q9H422 MIR6089-201ENST00000616698 64 ntBASIC25.05■■□□□ 1.6
HIPK3Q9H422 AC092437.1-201ENST00000624794 1048 ntBASIC25.05■■□□□ 1.6
HIPK3Q9H422 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
HIPK3Q9H422 TSPY26P-201ENST00000476365 1326 ntBASIC25.05■■□□□ 1.6
HIPK3Q9H422 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC25.05■■□□□ 1.6
HIPK3Q9H422 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC25.04■■□□□ 1.6
HIPK3Q9H422 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
HIPK3Q9H422 AC092803.2-201ENST00000564287 1899 ntBASIC25.04■■□□□ 1.6
HIPK3Q9H422 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC25.04■■□□□ 1.6
HIPK3Q9H422 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC25.04■■□□□ 1.6
HIPK3Q9H422 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC25.04■■□□□ 1.6
HIPK3Q9H422 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
HIPK3Q9H422 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC25.04■■□□□ 1.6
HIPK3Q9H422 DUX4L2-201ENST00000561772 1275 ntBASIC25.04■■□□□ 1.6
HIPK3Q9H422 pRNA.6-201ENST00000610482 90 ntBASIC25.04■■□□□ 1.6
HIPK3Q9H422 pRNA.5-201ENST00000612139 90 ntBASIC25.04■■□□□ 1.6
HIPK3Q9H422 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC25.04■■□□□ 1.6
HIPK3Q9H422 pRNA.11-201ENST00000618423 90 ntBASIC25.04■■□□□ 1.6
HIPK3Q9H422 pRNA.13-201ENST00000619112 90 ntBASIC25.04■■□□□ 1.6
HIPK3Q9H422 DUX4L6-201ENST00000626483 1275 ntBASIC25.04■■□□□ 1.6
HIPK3Q9H422 DUX4L1-201ENST00000627662 1275 ntBASIC25.04■■□□□ 1.6
HIPK3Q9H422 DUX4L8-201ENST00000629013 1275 ntBASIC25.04■■□□□ 1.6
HIPK3Q9H422 DUX4L3-201ENST00000630187 1275 ntBASIC25.04■■□□□ 1.6
HIPK3Q9H422 DUX4L7-201ENST00000630678 1275 ntBASIC25.04■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 66.5 ms