Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC31.66■■■□□ 2.66
CCDC61Q9Y6R9 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
CCDC61Q9Y6R9 AC091060.1-201ENST00000623524 1766 ntBASIC31.66■■■□□ 2.66
CCDC61Q9Y6R9 MIR5787-201ENST00000611784 55 ntBASIC31.65■■■□□ 2.66
CCDC61Q9Y6R9 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
CCDC61Q9Y6R9 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC31.65■■■□□ 2.66
CCDC61Q9Y6R9 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC31.65■■■□□ 2.66
CCDC61Q9Y6R9 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC31.64■■■□□ 2.66
CCDC61Q9Y6R9 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC31.64■■■□□ 2.66
CCDC61Q9Y6R9 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
CCDC61Q9Y6R9 CA15P2-201ENST00000611168 834 ntBASIC31.64■■■□□ 2.66
CCDC61Q9Y6R9 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
CCDC61Q9Y6R9 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
CCDC61Q9Y6R9 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
CCDC61Q9Y6R9 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC31.64■■■□□ 2.65
CCDC61Q9Y6R9 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.65
CCDC61Q9Y6R9 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC31.64■■■□□ 2.65
CCDC61Q9Y6R9 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
CCDC61Q9Y6R9 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
CCDC61Q9Y6R9 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC31.63■■■□□ 2.65
CCDC61Q9Y6R9 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC31.63■■■□□ 2.65
CCDC61Q9Y6R9 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
CCDC61Q9Y6R9 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
CCDC61Q9Y6R9 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC31.62■■■□□ 2.65
CCDC61Q9Y6R9 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC31.62■■■□□ 2.65
CCDC61Q9Y6R9 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC31.62■■■□□ 2.65
CCDC61Q9Y6R9 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC31.62■■■□□ 2.65
CCDC61Q9Y6R9 AC145676.1-201ENST00000514988 2004 ntBASIC31.61■■■□□ 2.65
CCDC61Q9Y6R9 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
CCDC61Q9Y6R9 AC241377.3-202ENST00000626088 1088 ntBASIC31.61■■■□□ 2.65
CCDC61Q9Y6R9 AC241585.3-202ENST00000628937 1088 ntBASIC31.61■■■□□ 2.65
CCDC61Q9Y6R9 AC245100.8-202ENST00000629247 1058 ntBASIC31.61■■■□□ 2.65
CCDC61Q9Y6R9 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC31.61■■■□□ 2.65
CCDC61Q9Y6R9 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC31.6■■■□□ 2.65
CCDC61Q9Y6R9 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC31.6■■■□□ 2.65
CCDC61Q9Y6R9 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC31.6■■■□□ 2.65
CCDC61Q9Y6R9 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
CCDC61Q9Y6R9 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC31.6■■■□□ 2.65
CCDC61Q9Y6R9 AC027682.1-201ENST00000562846 899 ntBASIC31.6■■■□□ 2.65
CCDC61Q9Y6R9 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC31.6■■■□□ 2.65
CCDC61Q9Y6R9 MIR6821-201ENST00000617625 74 ntBASIC31.6■■■□□ 2.65
CCDC61Q9Y6R9 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC31.6■■■□□ 2.65
CCDC61Q9Y6R9 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC31.6■■■□□ 2.65
CCDC61Q9Y6R9 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC31.59■■■□□ 2.65
CCDC61Q9Y6R9 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC31.59■■■□□ 2.65
CCDC61Q9Y6R9 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC31.59■■■□□ 2.65
CCDC61Q9Y6R9 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC31.59■■■□□ 2.65
CCDC61Q9Y6R9 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC31.59■■■□□ 2.65
CCDC61Q9Y6R9 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
CCDC61Q9Y6R9 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC31.59■■■□□ 2.65
CCDC61Q9Y6R9 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC31.59■■■□□ 2.65
CCDC61Q9Y6R9 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC31.59■■■□□ 2.65
CCDC61Q9Y6R9 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
CCDC61Q9Y6R9 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
CCDC61Q9Y6R9 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC31.58■■■□□ 2.65
CCDC61Q9Y6R9 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
CCDC61Q9Y6R9 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC31.58■■■□□ 2.65
CCDC61Q9Y6R9 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
CCDC61Q9Y6R9 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC31.58■■■□□ 2.65
CCDC61Q9Y6R9 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC31.58■■■□□ 2.65
CCDC61Q9Y6R9 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC31.58■■■□□ 2.65
CCDC61Q9Y6R9 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC31.58■■■□□ 2.65
CCDC61Q9Y6R9 CD37-213ENST00000598095 1598 ntTSL 2 BASIC31.58■■■□□ 2.65
CCDC61Q9Y6R9 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
CCDC61Q9Y6R9 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC31.58■■■□□ 2.65
CCDC61Q9Y6R9 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC31.57■■■□□ 2.64
CCDC61Q9Y6R9 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC31.57■■■□□ 2.64
CCDC61Q9Y6R9 HES6-206ENST00000409574 738 ntTSL 2 BASIC31.57■■■□□ 2.64
CCDC61Q9Y6R9 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC31.57■■■□□ 2.64
CCDC61Q9Y6R9 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC31.57■■■□□ 2.64
CCDC61Q9Y6R9 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC31.57■■■□□ 2.64
CCDC61Q9Y6R9 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC31.56■■■□□ 2.64
CCDC61Q9Y6R9 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
CCDC61Q9Y6R9 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
CCDC61Q9Y6R9 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
CCDC61Q9Y6R9 AC097381.1-201ENST00000429019 1296 ntBASIC31.56■■■□□ 2.64
CCDC61Q9Y6R9 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC31.56■■■□□ 2.64
CCDC61Q9Y6R9 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC31.56■■■□□ 2.64
CCDC61Q9Y6R9 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC31.56■■■□□ 2.64
CCDC61Q9Y6R9 AC136469.2-201ENST00000623944 1028 ntBASIC31.56■■■□□ 2.64
CCDC61Q9Y6R9 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
CCDC61Q9Y6R9 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
CCDC61Q9Y6R9 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
CCDC61Q9Y6R9 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC31.55■■■□□ 2.64
CCDC61Q9Y6R9 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
CCDC61Q9Y6R9 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC31.55■■■□□ 2.64
CCDC61Q9Y6R9 AC104564.3-201ENST00000582367 638 ntBASIC31.55■■■□□ 2.64
CCDC61Q9Y6R9 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC31.55■■■□□ 2.64
CCDC61Q9Y6R9 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC31.55■■■□□ 2.64
CCDC61Q9Y6R9 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
CCDC61Q9Y6R9 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
CCDC61Q9Y6R9 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC31.54■■■□□ 2.64
CCDC61Q9Y6R9 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC31.54■■■□□ 2.64
CCDC61Q9Y6R9 AC008764.7-201ENST00000593779 1081 ntBASIC31.54■■■□□ 2.64
CCDC61Q9Y6R9 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC31.54■■■□□ 2.64
CCDC61Q9Y6R9 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
CCDC61Q9Y6R9 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
CCDC61Q9Y6R9 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
CCDC61Q9Y6R9 AL161729.1-201ENST00000604104 1402 ntBASIC31.53■■■□□ 2.64
CCDC61Q9Y6R9 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms