Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.54■□□□□ 0.88
COL12A1Q99715 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
COL12A1Q99715 ME3-201ENST00000323418 1068 ntTSL 5 BASIC20.53■□□□□ 0.88
COL12A1Q99715 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
COL12A1Q99715 CDCA4P2-201ENST00000441182 718 ntBASIC20.53■□□□□ 0.88
COL12A1Q99715 TSPY20P-201ENST00000450910 630 ntBASIC20.53■□□□□ 0.88
COL12A1Q99715 AC093827.2-201ENST00000512654 315 ntBASIC20.53■□□□□ 0.88
COL12A1Q99715 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC20.53■□□□□ 0.88
COL12A1Q99715 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL12A1Q99715 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC20.53■□□□□ 0.88
COL12A1Q99715 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL12A1Q99715 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL12A1Q99715 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC20.53■□□□□ 0.88
COL12A1Q99715 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL12A1Q99715 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.52■□□□□ 0.88
COL12A1Q99715 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.52■□□□□ 0.88
COL12A1Q99715 PROC-203ENST00000409048 1586 ntTSL 5 BASIC20.52■□□□□ 0.88
COL12A1Q99715 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.52■□□□□ 0.88
COL12A1Q99715 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
COL12A1Q99715 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC20.52■□□□□ 0.87
COL12A1Q99715 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
COL12A1Q99715 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL12A1Q99715 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL12A1Q99715 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL12A1Q99715 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
COL12A1Q99715 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC20.51■□□□□ 0.87
COL12A1Q99715 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC20.51■□□□□ 0.87
COL12A1Q99715 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL12A1Q99715 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.51■□□□□ 0.87
COL12A1Q99715 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL12A1Q99715 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL12A1Q99715 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL12A1Q99715 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL12A1Q99715 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.5■□□□□ 0.87
COL12A1Q99715 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC20.5■□□□□ 0.87
COL12A1Q99715 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC20.5■□□□□ 0.87
COL12A1Q99715 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC20.5■□□□□ 0.87
COL12A1Q99715 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL12A1Q99715 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL12A1Q99715 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL12A1Q99715 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL12A1Q99715 ARL16-209ENST00000573715 763 ntTSL 3 BASIC20.5■□□□□ 0.87
COL12A1Q99715 ARL16-211ENST00000576135 694 ntTSL 3 BASIC20.5■□□□□ 0.87
COL12A1Q99715 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL12A1Q99715 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL12A1Q99715 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL12A1Q99715 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL12A1Q99715 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC20.5■□□□□ 0.87
COL12A1Q99715 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
COL12A1Q99715 AC027612.3-201ENST00000413684 1047 ntBASIC20.5■□□□□ 0.87
COL12A1Q99715 AC011298.3-201ENST00000615796 283 ntBASIC20.5■□□□□ 0.87
COL12A1Q99715 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL12A1Q99715 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.49■□□□□ 0.87
COL12A1Q99715 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL12A1Q99715 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL12A1Q99715 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
COL12A1Q99715 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL12A1Q99715 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.49■□□□□ 0.87
COL12A1Q99715 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL12A1Q99715 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC20.49■□□□□ 0.87
COL12A1Q99715 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
COL12A1Q99715 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC20.48■□□□□ 0.87
COL12A1Q99715 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC20.48■□□□□ 0.87
COL12A1Q99715 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL12A1Q99715 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC20.48■□□□□ 0.87
COL12A1Q99715 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL12A1Q99715 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL12A1Q99715 GXYLT1P2-201ENST00000433312 1230 ntBASIC20.47■□□□□ 0.87
COL12A1Q99715 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC20.47■□□□□ 0.87
COL12A1Q99715 AL358852.1-201ENST00000623174 1268 ntBASIC20.47■□□□□ 0.87
COL12A1Q99715 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL12A1Q99715 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL12A1Q99715 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
COL12A1Q99715 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL12A1Q99715 FOXO3B-201ENST00000395675 1928 ntBASIC20.47■□□□□ 0.87
COL12A1Q99715 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL12A1Q99715 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL12A1Q99715 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL12A1Q99715 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL12A1Q99715 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL12A1Q99715 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC20.47■□□□□ 0.87
COL12A1Q99715 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL12A1Q99715 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL12A1Q99715 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.46■□□□□ 0.87
COL12A1Q99715 MIR6722-201ENST00000617286 78 ntBASIC20.46■□□□□ 0.87
COL12A1Q99715 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.46■□□□□ 0.87
COL12A1Q99715 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL12A1Q99715 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL12A1Q99715 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC20.46■□□□□ 0.87
COL12A1Q99715 TERF1P2-201ENST00000583350 1212 ntBASIC20.46■□□□□ 0.87
COL12A1Q99715 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL12A1Q99715 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
COL12A1Q99715 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL12A1Q99715 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL12A1Q99715 TMEM191A-211ENST00000637163 1067 ntBASIC20.45■□□□□ 0.86
COL12A1Q99715 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL12A1Q99715 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL12A1Q99715 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL12A1Q99715 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
COL12A1Q99715 AL138724.1-201ENST00000606771 1088 ntBASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms