Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
LMX1BO60663 IDNK-203ENST00000405990 629 ntTSL 2 BASIC20.27■□□□□ 0.84
LMX1BO60663 GUSBP5-201ENST00000418136 578 ntBASIC20.27■□□□□ 0.84
LMX1BO60663 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC20.27■□□□□ 0.84
LMX1BO60663 AC133561.1-201ENST00000568600 2415 ntBASIC20.27■□□□□ 0.84
LMX1BO60663 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
LMX1BO60663 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC20.27■□□□□ 0.83
LMX1BO60663 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC20.27■□□□□ 0.83
LMX1BO60663 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC20.27■□□□□ 0.83
LMX1BO60663 AC019069.1-201ENST00000610008 1333 ntBASIC20.27■□□□□ 0.83
LMX1BO60663 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
LMX1BO60663 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
LMX1BO60663 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC20.26■□□□□ 0.83
LMX1BO60663 THA1P-201ENST00000590384 1145 ntBASIC20.26■□□□□ 0.83
LMX1BO60663 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
LMX1BO60663 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
LMX1BO60663 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
LMX1BO60663 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LMX1BO60663 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
LMX1BO60663 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
LMX1BO60663 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC20.25■□□□□ 0.83
LMX1BO60663 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LMX1BO60663 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC20.25■□□□□ 0.83
LMX1BO60663 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC20.25■□□□□ 0.83
LMX1BO60663 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LMX1BO60663 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.25■□□□□ 0.83
LMX1BO60663 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LMX1BO60663 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LMX1BO60663 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
LMX1BO60663 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
LMX1BO60663 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LMX1BO60663 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LMX1BO60663 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
LMX1BO60663 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
LMX1BO60663 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
LMX1BO60663 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LMX1BO60663 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC20.24■□□□□ 0.83
LMX1BO60663 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
LMX1BO60663 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
LMX1BO60663 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
LMX1BO60663 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LMX1BO60663 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC20.24■□□□□ 0.83
LMX1BO60663 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LMX1BO60663 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LMX1BO60663 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LMX1BO60663 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LMX1BO60663 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
LMX1BO60663 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC20.23■□□□□ 0.83
LMX1BO60663 IDNK-201ENST00000376417 511 ntTSL 5 BASIC20.23■□□□□ 0.83
LMX1BO60663 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LMX1BO60663 MTX2-204ENST00000443241 799 ntTSL 3 BASIC20.23■□□□□ 0.83
LMX1BO60663 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC20.23■□□□□ 0.83
LMX1BO60663 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LMX1BO60663 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
LMX1BO60663 SHD-204ENST00000599689 1729 ntTSL 5 BASIC20.23■□□□□ 0.83
LMX1BO60663 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
LMX1BO60663 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LMX1BO60663 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
LMX1BO60663 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LMX1BO60663 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
LMX1BO60663 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC20.22■□□□□ 0.83
LMX1BO60663 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
LMX1BO60663 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
LMX1BO60663 AL031848.2-201ENST00000607670 837 ntBASIC20.22■□□□□ 0.83
LMX1BO60663 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
LMX1BO60663 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
LMX1BO60663 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
LMX1BO60663 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
LMX1BO60663 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC20.22■□□□□ 0.83
LMX1BO60663 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.22■□□□□ 0.83
LMX1BO60663 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
LMX1BO60663 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.21■□□□□ 0.83
LMX1BO60663 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
LMX1BO60663 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
LMX1BO60663 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
LMX1BO60663 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LMX1BO60663 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC20.21■□□□□ 0.83
LMX1BO60663 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC20.21■□□□□ 0.83
LMX1BO60663 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LMX1BO60663 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LMX1BO60663 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LMX1BO60663 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC20.21■□□□□ 0.83
LMX1BO60663 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LMX1BO60663 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
LMX1BO60663 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
LMX1BO60663 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC20.2■□□□□ 0.82
LMX1BO60663 PRTG-204ENST00000561292 833 ntTSL 3 BASIC20.2■□□□□ 0.82
LMX1BO60663 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LMX1BO60663 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
LMX1BO60663 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LMX1BO60663 AC103724.3-201ENST00000564481 992 ntBASIC20.19■□□□□ 0.82
LMX1BO60663 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC20.19■□□□□ 0.82
LMX1BO60663 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LMX1BO60663 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LMX1BO60663 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
LMX1BO60663 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC20.19■□□□□ 0.82
LMX1BO60663 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LMX1BO60663 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC20.18■□□□□ 0.82
LMX1BO60663 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC20.18■□□□□ 0.82
LMX1BO60663 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms