Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 FBLN1-217ENST00000476366 872 ntTSL 513.85□□□□□ -0.192e-6■□□□□ 9
LIN28BQ6ZN17 CTSB-222ENST00000531551 1855 ntTSL 1 (best)19.2■□□□□ 0.661e-6■□□□□ 9
LIN28BQ6ZN17 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.511e-6■□□□□ 9
LIN28BQ6ZN17 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.431e-6■□□□□ 9
LIN28BQ6ZN17 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.361e-6■□□□□ 9
LIN28BQ6ZN17 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.351e-6■□□□□ 9
LIN28BQ6ZN17 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.321e-6■□□□□ 9
LIN28BQ6ZN17 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.231e-6■□□□□ 9
LIN28BQ6ZN17 CTSB-203ENST00000420692 2230 ntTSL 216.14■□□□□ 0.171e-6■□□□□ 9
LIN28BQ6ZN17 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.111e-6■□□□□ 9
LIN28BQ6ZN17 HNRNPF-206ENST00000498176 715 ntTSL 1 (best)24.93■■□□□ 1.582e-11■□□□□ 9
LIN28BQ6ZN17 HNRNPF-205ENST00000477108 636 ntTSL 1 (best)17.21■□□□□ 0.352e-11■□□□□ 9
LIN28BQ6ZN17 ALDH1A2-208ENST00000558239 664 ntTSL 413.26□□□□□ -0.292e-11■□□□□ 9
LIN28BQ6ZN17 ALDH1A2-205ENST00000557967 577 ntTSL 411.11□□□□□ -0.632e-11■□□□□ 9
LIN28BQ6ZN17 ALDH1A2-212ENST00000558595 484 ntTSL 311.06□□□□□ -0.642e-11■□□□□ 9
LIN28BQ6ZN17 ALDH1A2-206ENST00000558073 581 ntTSL 49.89□□□□□ -0.832e-11■□□□□ 9
LIN28BQ6ZN17 ALDH1A2-220ENST00000560122 562 ntTSL 59.71□□□□□ -0.862e-11■□□□□ 9
LIN28BQ6ZN17 ALDH1A2-216ENST00000559297 542 ntTSL 47.35□□□□□ -1.232e-11■□□□□ 9
LIN28BQ6ZN17 PTPRK-214ENST00000495748 746 ntTSL 58.85□□□□□ -0.995e-8■□□□□ 9
LIN28BQ6ZN17 AP2M1-208ENST00000442686 673 ntTSL 210.47□□□□□ -0.731e-11■□□□□ 8.9
LIN28BQ6ZN17 AP2M1-218ENST00000480260 582 ntTSL 210.26□□□□□ -0.771e-11■□□□□ 8.9
LIN28BQ6ZN17 AP2M1-213ENST00000463935 580 ntTSL 210.13□□□□□ -0.791e-11■□□□□ 8.9
LIN28BQ6ZN17 AP2M1-217ENST00000476434 321 ntTSL 25.33□□□□□ -1.561e-11■□□□□ 8.9
LIN28BQ6ZN17 Y_RNA.471-201ENST00000384312 102 ntBASIC2.48□□□□□ -2.016e-7■□□□□ 8.9
LIN28BQ6ZN17 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.286e-7■□□□□ 8.9
LIN28BQ6ZN17 LAMC1-204ENST00000479499 700 ntTSL 313.84□□□□□ -0.193e-8■□□□□ 8.9
LIN28BQ6ZN17 TXN2-205ENST00000487725 736 ntTSL 321.6■■□□□ 1.052e-6■□□□□ 8.9
LIN28BQ6ZN17 TXN2-204ENST00000416967 1280 ntTSL 2 BASIC13.57□□□□□ -0.242e-6■□□□□ 8.9
LIN28BQ6ZN17 TXN2-202ENST00000403313 912 ntAPPRIS P1 TSL 3 BASIC13.35□□□□□ -0.272e-6■□□□□ 8.9
LIN28BQ6ZN17 TXN2-201ENST00000216185 1736 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.292e-6■□□□□ 8.9
LIN28BQ6ZN17 TXN2-203ENST00000411915 570 ntTSL 510.77□□□□□ -0.692e-6■□□□□ 8.9
LIN28BQ6ZN17 ERBIN-215ENST00000511671 589 ntTSL 32.59□□□□□ -1.992e-8■□□□□ 8.9
LIN28BQ6ZN17 TPT1-208ENST00000527226 613 ntTSL 215.54■□□□□ 0.087e-20■□□□□ 8.9
LIN28BQ6ZN17 TBCB-208ENST00000588385 776 ntTSL 1 (best)22.39■■□□□ 1.172e-6■□□□□ 8.9
LIN28BQ6ZN17 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.162e-6■□□□□ 8.9
LIN28BQ6ZN17 SUN2-213ENST00000464202 541 ntTSL 220.86■□□□□ 0.932e-6■□□□□ 8.9
LIN28BQ6ZN17 TBCB-205ENST00000585746 875 ntTSL 3 BASIC20.5■□□□□ 0.872e-6■□□□□ 8.9
LIN28BQ6ZN17 TBCB-203ENST00000468156 630 ntTSL 220.35■□□□□ 0.852e-6■□□□□ 8.9
LIN28BQ6ZN17 TBCB-206ENST00000585910 656 ntTSL 218.47■□□□□ 0.552e-6■□□□□ 8.9
LIN28BQ6ZN17 SUN2-216ENST00000477262 914 ntTSL 317■□□□□ 0.312e-6■□□□□ 8.9
LIN28BQ6ZN17 SUN2-214ENST00000469086 1351 ntTSL 516.92■□□□□ 0.32e-6■□□□□ 8.9
LIN28BQ6ZN17 TBCB-211ENST00000589996 724 ntTSL 3 BASIC16.78■□□□□ 0.282e-6■□□□□ 8.9
LIN28BQ6ZN17 SON-203ENST00000381679 7860 ntTSL 5 BASIC12.12□□□□□ -0.472e-6■□□□□ 8.9
LIN28BQ6ZN17 TBCB-207ENST00000586868 466 ntTSL 3 BASIC11.85□□□□□ -0.512e-6■□□□□ 8.9
LIN28BQ6ZN17 TMEM245-202ENST00000413712 1973 ntTSL 28.3□□□□□ -1.082e-6■□□□□ 8.9
LIN28BQ6ZN17 TMEM245-205ENST00000491854 2435 ntTSL 26.93□□□□□ -1.32e-6■□□□□ 8.9
LIN28BQ6ZN17 SMG1-202ENST00000446231 16115 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.32e-6■□□□□ 8.9
LIN28BQ6ZN17 SMG1-211ENST00000565324 12465 ntTSL 1 (best)4.45□□□□□ -1.72e-6■□□□□ 8.9
LIN28BQ6ZN17 LARS-210ENST00000508667 707 ntTSL 39.34□□□□□ -0.911e-6■□□□□ 8.9
LIN28BQ6ZN17 LARS-202ENST00000394434 4766 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.951e-6■□□□□ 8.9
LIN28BQ6ZN17 LARS-212ENST00000510191 3737 ntTSL 2 BASIC7.13□□□□□ -1.271e-6■□□□□ 8.9
LIN28BQ6ZN17 LARS-209ENST00000507095 384 ntTSL 35.49□□□□□ -1.531e-6■□□□□ 8.9
LIN28BQ6ZN17 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.38□□□□□ -1.551e-6■□□□□ 8.9
LIN28BQ6ZN17 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC20.73■□□□□ 0.918e-9■□□□□ 8.9
LIN28BQ6ZN17 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC18.64■□□□□ 0.578e-9■□□□□ 8.9
LIN28BQ6ZN17 LAMTOR4-204ENST00000466498 371 ntTSL 217.05■□□□□ 0.328e-9■□□□□ 8.9
LIN28BQ6ZN17 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.238e-9■□□□□ 8.9
LIN28BQ6ZN17 LAMTOR4-210ENST00000488338 533 ntTSL 316.24■□□□□ 0.198e-9■□□□□ 8.9
LIN28BQ6ZN17 LAMTOR4-208ENST00000474831 564 ntTSL 315.57■□□□□ 0.088e-9■□□□□ 8.9
LIN28BQ6ZN17 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC15.32■□□□□ 0.048e-9■□□□□ 8.9
LIN28BQ6ZN17 LAMTOR4-202ENST00000441173 730 ntTSL 2 BASIC14.71□□□□□ -0.058e-9■□□□□ 8.9
LIN28BQ6ZN17 HERC1-202ENST00000558324 828 ntTSL 513.58□□□□□ -0.248e-9■□□□□ 8.9
LIN28BQ6ZN17 LAMTOR4-207ENST00000474141 519 ntTSL 2 BASIC12.95□□□□□ -0.348e-9■□□□□ 8.9
LIN28BQ6ZN17 LAMTOR4-203ENST00000460732 616 ntTSL 3 BASIC11.86□□□□□ -0.518e-9■□□□□ 8.9
LIN28BQ6ZN17 HERC1-212ENST00000561348 588 ntTSL 211.34□□□□□ -0.598e-9■□□□□ 8.9
LIN28BQ6ZN17 ERBB3-208ENST00000549205 971 ntTSL 513.16□□□□□ -0.31e-10■□□□□ 8.9
LIN28BQ6ZN17 SERPINA5-207ENST00000554760 1113 ntTSL 211.46□□□□□ -0.573e-11■□□□□ 8.8
LIN28BQ6ZN17 SERPINA5-203ENST00000553780 2071 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.593e-11■□□□□ 8.8
LIN28BQ6ZN17 SERPINA5-211ENST00000556730 1463 ntTSL 210.95□□□□□ -0.663e-11■□□□□ 8.8
LIN28BQ6ZN17 CTSB-225ENST00000532409 839 ntTSL 217.54■□□□□ 0.41e-6■□□□□ 8.8
LIN28BQ6ZN17 CTSB-218ENST00000530624 430 ntTSL 516.23■□□□□ 0.191e-6■□□□□ 8.8
LIN28BQ6ZN17 CTSB-216ENST00000530290 498 ntTSL 36.55□□□□□ -1.361e-6■□□□□ 8.8
LIN28BQ6ZN17 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.339e-37■□□□□ 8.8
LIN28BQ6ZN17 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.449e-37■□□□□ 8.8
LIN28BQ6ZN17 STMN1-207ENST00000465604 2947 ntTSL 1 (best)4.22□□□□□ -1.739e-37■□□□□ 8.8
LIN28BQ6ZN17 DDX42-215ENST00000582985 543 ntTSL 411.06□□□□□ -0.641e-6■□□□□ 8.8
LIN28BQ6ZN17 DDX42-214ENST00000581767 2244 nt9.76□□□□□ -0.851e-6■□□□□ 8.8
LIN28BQ6ZN17 DDX42-207ENST00000578593 2919 ntTSL 26.37□□□□□ -1.391e-6■□□□□ 8.8
LIN28BQ6ZN17 NFE2L1-205ENST00000577411 562 ntTSL 520.09■□□□□ 0.813e-9■□□□□ 8.8
LIN28BQ6ZN17 NFE2L1-206ENST00000577431 583 ntTSL 520.09■□□□□ 0.813e-9■□□□□ 8.8
LIN28BQ6ZN17 NFE2L1-211ENST00000580050 476 ntTSL 420.09■□□□□ 0.813e-9■□□□□ 8.8
LIN28BQ6ZN17 NFE2L1-220ENST00000584634 588 ntTSL 420.09■□□□□ 0.813e-9■□□□□ 8.8
LIN28BQ6ZN17 NFE2L1-217ENST00000583210 512 ntTSL 417.75■□□□□ 0.433e-9■□□□□ 8.8
LIN28BQ6ZN17 NFE2L1-210ENST00000580037 583 ntTSL 416.48■□□□□ 0.233e-9■□□□□ 8.8
LIN28BQ6ZN17 NFE2L1-208ENST00000579537 372 ntTSL 413.74□□□□□ -0.213e-9■□□□□ 8.8
LIN28BQ6ZN17 TARS-213ENST00000513066 656 ntTSL 311.97□□□□□ -0.491e-6■□□□□ 8.8
LIN28BQ6ZN17 FKBP8-210ENST00000599540 1140 ntTSL 214.97□□□□□ -0.012e-11■□□□□ 8.8
LIN28BQ6ZN17 TRIR-204ENST00000591254 988 ntTSL 229.43■■■□□ 2.33e-8■□□□□ 8.8
LIN28BQ6ZN17 TRIR-205ENST00000592273 783 ntTSL 3 BASIC27.14■■□□□ 1.943e-8■□□□□ 8.8
LIN28BQ6ZN17 TRIR-202ENST00000588213 841 ntTSL 3 BASIC26.11■■□□□ 1.773e-8■□□□□ 8.8
LIN28BQ6ZN17 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.573e-8■□□□□ 8.8
LIN28BQ6ZN17 TRIR-203ENST00000589590 930 ntTSL 220.97■□□□□ 0.953e-8■□□□□ 8.8
LIN28BQ6ZN17 RETREG3-208ENST00000589797 4149 ntTSL 214.55□□□□□ -0.083e-8■□□□□ 8.8
LIN28BQ6ZN17 RETREG3-201ENST00000309428 3759 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.423e-8■□□□□ 8.8
LIN28BQ6ZN17 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC19.75■□□□□ 0.754e-6■□□□□ 8.8
LIN28BQ6ZN17 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC18.6■□□□□ 0.574e-6■□□□□ 8.8
LIN28BQ6ZN17 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.464e-6■□□□□ 8.8
LIN28BQ6ZN17 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.364e-6■□□□□ 8.8
LIN28BQ6ZN17 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.24e-6■□□□□ 8.8
LIN28BQ6ZN17 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC15.9■□□□□ 0.144e-6■□□□□ 8.8
Retrieved 100 of 21,972 protein–RNA pairs in 335.1 ms