RNA–Protein interactions for RNA: ENST00000589797.5

RETREG3-208, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 2

Gene RETREG3, Length 4,149 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-208ENST00000589797 NISCHQ9Y2I1 1504 aa27.46■■□□□ 1.99
RETREG3-208ENST00000589797 DCAF8L2P0C7V8 631 aa26.5■■□□□ 1.83
RETREG3-208ENST00000589797 SHROOM4Q9ULL8 1493 aa25.63■■□□□ 1.69
RETREG3-208ENST00000589797 SUPT5HO00267 1087 aaKnown RBP25.52■■□□□ 1.68
RETREG3-208ENST00000589797 EHMT2Q96KQ7 1210 aa24.43■■□□□ 1.5
RETREG3-208ENST00000589797 FAM9AQ8IZU1 332 aaPredicted RBP23.95■■□□□ 1.43
RETREG3-208ENST00000589797 PCGF6Q9BYE7 350 aa23.57■■□□□ 1.36
RETREG3-208ENST00000589797 TTBK1Q5TCY1 1321 aaPredicted RBP23.46■■□□□ 1.35
RETREG3-208ENST00000589797 TRIM41Q8WV44 630 aa23.43■■□□□ 1.34
RETREG3-208ENST00000589797 CHIC1Q5VXU3 224 aa23.35■■□□□ 1.33
RETREG3-208ENST00000589797 LOC105371045A0A1W2PR82 267 aa23.34■■□□□ 1.33
RETREG3-208ENST00000589797 ABCC9O60706 1549 aa23.27■■□□□ 1.32
RETREG3-208ENST00000589797 RANGAP1P46060 587 aaPredicted RBP23.22■■□□□ 1.31
RETREG3-208ENST00000589797 PPARGC1BQ86YN6 1023 aaKnown RBP23.17■■□□□ 1.3
RETREG3-208ENST00000589797 PABPN1Q86U42 306 aaKnown RBP eCLIP22.99■■□□□ 1.27
RETREG3-208ENST00000589797 UBTFP17480 764 aaKnown RBP22.85■■□□□ 1.25
RETREG3-208ENST00000589797 ZCCHC6Q5VYS8 1495 aaKnown RBP22.84■■□□□ 1.25
RETREG3-208ENST00000589797 APLP2Q06481 763 aa22.74■■□□□ 1.23
RETREG3-208ENST00000589797 CCER1Q8TC90 406 aaPredicted RBP22.53■■□□□ 1.2
RETREG3-208ENST00000589797 ATP1B4Q9UN42 357 aaPredicted RBP22.51■■□□□ 1.19
RETREG3-208ENST00000589797 SCRIBQ14160 1630 aa22.49■■□□□ 1.19
RETREG3-208ENST00000589797 TRIM26Q12899 539 aaPredicted RBP22.49■■□□□ 1.19
RETREG3-208ENST00000589797 CCDC180Q9P1Z9 1646 aa22.44■■□□□ 1.18
RETREG3-208ENST00000589797 HRCP23327 699 aa22.44■■□□□ 1.18
RETREG3-208ENST00000589797 MYO15BQ96JP2 1530 aa22.2■■□□□ 1.14
RETREG3-208ENST00000589797 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.18■■□□□ 1.14
RETREG3-208ENST00000589797 HNRNPUL2Q1KMD3 747 aaKnown RBP22.18■■□□□ 1.14
RETREG3-208ENST00000589797 ITGAEP38570 1179 aa22.15■■□□□ 1.14
RETREG3-208ENST00000589797 ZEB1P37275 1124 aaPredicted RBP22.12■■□□□ 1.13
RETREG3-208ENST00000589797 RSF1Q96T23 1441 aaPredicted RBP22.03■■□□□ 1.12
RETREG3-208ENST00000589797 YTHDC1Q96MU7 727 aaKnown RBP21.91■■□□□ 1.1
RETREG3-208ENST00000589797 CECR2Q9BXF3 1484 aa21.9■■□□□ 1.1
RETREG3-208ENST00000589797 CSRNP3Q8WYN3 585 aa21.86■■□□□ 1.09
RETREG3-208ENST00000589797 P3H3Q8IVL6 736 aa21.7■■□□□ 1.07
RETREG3-208ENST00000589797 DCAF1Q9Y4B6 1507 aa21.64■■□□□ 1.06
RETREG3-208ENST00000589797 RB1CC1Q8TDY2 1594 aa21.6■■□□□ 1.05
RETREG3-208ENST00000589797 NACADO15069 1562 aa21.58■■□□□ 1.05
RETREG3-208ENST00000589797 CENPBP07199 599 aaPredicted RBP21.55■■□□□ 1.04
RETREG3-208ENST00000589797 FAM50AQ14320 339 aaKnown RBP21.53■■□□□ 1.04
RETREG3-208ENST00000589797 MROH2BQ7Z745 1585 aa21.52■■□□□ 1.04
RETREG3-208ENST00000589797 ARID3CA6NKF2 412 aa21.52■■□□□ 1.04
RETREG3-208ENST00000589797 DIEXFQ68CQ4 756 aaKnown RBP21.45■■□□□ 1.02
RETREG3-208ENST00000589797 CNGB1Q14028 1251 aaPredicted RBP21.4■■□□□ 1.02
RETREG3-208ENST00000589797 FBLN2P98095 1184 aa21.38■■□□□ 1.01
RETREG3-208ENST00000589797 NEUROD1Q13562 356 aa21.37■■□□□ 1.01
RETREG3-208ENST00000589797 SOGA1O94964 1423 aa21.27■■□□□ 1
RETREG3-208ENST00000589797 POLR3GLQ9BT43 218 aa21.25■□□□□ 0.99
RETREG3-208ENST00000589797 BAZ1AQ9NRL2 1556 aaPredicted RBP21.25■□□□□ 0.99
RETREG3-208ENST00000589797 WIZO95785 1651 aa21.23■□□□□ 0.99
RETREG3-208ENST00000589797 WRNQ14191 1432 aaPredicted RBP eCLIP21.22■□□□□ 0.99
RETREG3-208ENST00000589797 ABCC8Q09428 1581 aa21.21■□□□□ 0.99
RETREG3-208ENST00000589797 CCDC88BA6NC98 1476 aa21.19■□□□□ 0.98
RETREG3-208ENST00000589797 BAZ1BQ9UIG0 1483 aaKnown RBP21.18■□□□□ 0.98
RETREG3-208ENST00000589797 CEP162Q5TB80 1403 aa21.16■□□□□ 0.98
RETREG3-208ENST00000589797 TRIM52Q96A61 297 aa21.14■□□□□ 0.98
RETREG3-208ENST00000589797 CLIP1P30622 1438 aa21.1■□□□□ 0.97
RETREG3-208ENST00000589797 MYT1LQ9UL68 1186 aa21.1■□□□□ 0.97
RETREG3-208ENST00000589797 ZNF316A6NFI3 1004 aaPredicted RBP21.07■□□□□ 0.96
RETREG3-208ENST00000589797 PELP1Q8IZL8 1130 aaKnown RBP21.06■□□□□ 0.96
RETREG3-208ENST00000589797 TNIKQ9UKE5 1360 aa20.95■□□□□ 0.94
RETREG3-208ENST00000589797 GTF3C3Q9Y5Q9 886 aa20.94■□□□□ 0.94
RETREG3-208ENST00000589797 ZNF777Q9ULD5 760 aaPredicted RBP20.94■□□□□ 0.94
RETREG3-208ENST00000589797 GOLGA3Q08378 1498 aa20.94■□□□□ 0.94
RETREG3-208ENST00000589797 ZNF326Q5BKZ1 582 aaKnown RBP20.93■□□□□ 0.94
RETREG3-208ENST00000589797 CHIC2Q9UKJ5 165 aa20.93■□□□□ 0.94
RETREG3-208ENST00000589797 RUSC2Q8N2Y8 1516 aa20.93■□□□□ 0.94
RETREG3-208ENST00000589797 HIRIP3Q9BW71 556 aaPredicted RBP20.89■□□□□ 0.93
RETREG3-208ENST00000589797 EEA1Q15075 1411 aa20.84■□□□□ 0.93
RETREG3-208ENST00000589797 NEFLP07196 543 aa20.84■□□□□ 0.93
RETREG3-208ENST00000589797 KANK4Q5T7N3 995 aaPredicted RBP20.79■□□□□ 0.92
RETREG3-208ENST00000589797 KIF27Q86VH2 1401 aa20.77■□□□□ 0.92
RETREG3-208ENST00000589797 CEP164Q9UPV0 1460 aa20.77■□□□□ 0.92
RETREG3-208ENST00000589797 TOP2AP11388 1531 aaKnown RBP20.77■□□□□ 0.91
RETREG3-208ENST00000589797 ATAD2BQ9ULI0 1458 aa20.75■□□□□ 0.91
RETREG3-208ENST00000589797 BCANQ96GW7 911 aa20.75■□□□□ 0.91
RETREG3-208ENST00000589797 SMARCA4P51532 1647 aa20.74■□□□□ 0.91
RETREG3-208ENST00000589797 MIER1Q8N108 512 aa20.73■□□□□ 0.91
RETREG3-208ENST00000589797 ACIN1Q9UKV3 1341 aaKnown RBP20.72■□□□□ 0.91
RETREG3-208ENST00000589797 DDX10Q13206 875 aaKnown RBP20.72■□□□□ 0.91
RETREG3-208ENST00000589797 CUX2O14529 1486 aa20.69■□□□□ 0.9
RETREG3-208ENST00000589797 RRP7BPQ9NSQ0 103 aa20.68■□□□□ 0.9
RETREG3-208ENST00000589797 MTUS2Q5JR59 1369 aa20.66■□□□□ 0.9
RETREG3-208ENST00000589797 CHMP7Q8WUX9 453 aaPredicted RBP20.65■□□□□ 0.9
RETREG3-208ENST00000589797 CARMIL1Q5VZK9 1371 aa20.62■□□□□ 0.89
RETREG3-208ENST00000589797 SIN3AQ96ST3 1273 aa20.62■□□□□ 0.89
RETREG3-208ENST00000589797 RAPGEF2Q9Y4G8 1499 aa20.6■□□□□ 0.89
RETREG3-208ENST00000589797 TDRD9Q8NDG6 1382 aaKnown RBP20.6■□□□□ 0.89
RETREG3-208ENST00000589797 SMARCA2P51531 1590 aa20.58■□□□□ 0.89
RETREG3-208ENST00000589797 ANP32CO43423 234 aa20.58■□□□□ 0.88
RETREG3-208ENST00000589797 SCAF1Q9H7N4 1312 aaKnown RBP20.56■□□□□ 0.88
RETREG3-208ENST00000589797 CDK11AQ9UQ88 783 aaPredicted RBP20.55■□□□□ 0.88
RETREG3-208ENST00000589797 TONSLQ96HA7 1378 aa20.52■□□□□ 0.88
RETREG3-208ENST00000589797 SLC4A1APQ9BWU0 796 aaKnown RBP20.52■□□□□ 0.88
RETREG3-208ENST00000589797 VPS8Q8N3P4 1428 aa20.5■□□□□ 0.87
RETREG3-208ENST00000589797 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.46■□□□□ 0.87
RETREG3-208ENST00000589797 CADPSQ9ULU8 1353 aa20.46■□□□□ 0.87
RETREG3-208ENST00000589797 KCNH8Q96L42 1107 aa20.43■□□□□ 0.86
RETREG3-208ENST00000589797 SENP3-EIF4A1A0A087X0R7 540 aa20.42■□□□□ 0.86
RETREG3-208ENST00000589797 KDM2AQ9Y2K7 1162 aa20.41■□□□□ 0.86
RETREG3-208ENST00000589797 CCNB3Q8WWL7 1395 aa20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms