Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 WARS-206ENST00000553413 568 ntTSL 518.06■□□□□ 0.487e-6■□□□□ 10.6
LIN28BQ6ZN17 WARS-243ENST00000557722 848 ntTSL 518.06■□□□□ 0.487e-6■□□□□ 10.6
LIN28BQ6ZN17 WARS-222ENST00000555063 573 ntTSL 216.52■□□□□ 0.247e-6■□□□□ 10.6
LIN28BQ6ZN17 DNAJC4-205ENST00000536006 693 ntTSL 316.5■□□□□ 0.237e-6■□□□□ 10.6
LIN28BQ6ZN17 DNAJC4-204ENST00000535246 502 ntTSL 315.86■□□□□ 0.137e-6■□□□□ 10.6
LIN28BQ6ZN17 DNAJC4-210ENST00000543685 265 ntTSL 215.79■□□□□ 0.127e-6■□□□□ 10.6
LIN28BQ6ZN17 WARS-229ENST00000556435 528 ntTSL 215.55■□□□□ 0.087e-6■□□□□ 10.6
LIN28BQ6ZN17 WARS-215ENST00000554509 563 ntTSL 415.06■□□□□ 07e-6■□□□□ 10.6
LIN28BQ6ZN17 WARS-231ENST00000556579 565 ntTSL 215.06■□□□□ 07e-6■□□□□ 10.6
LIN28BQ6ZN17 DNAJC4-211ENST00000543791 489 ntTSL 314.82□□□□□ -0.047e-6■□□□□ 10.6
LIN28BQ6ZN17 FP236383.1-201ENST00000623860 2498 ntTSL 2 BASIC14.24□□□□□ -0.135e-25■□□□□ 10.6
LIN28BQ6ZN17 WARS-210ENST00000553769 560 ntTSL 414.04□□□□□ -0.167e-6■□□□□ 10.6
LIN28BQ6ZN17 WARS-217ENST00000554605 560 ntTSL 314.04□□□□□ -0.167e-6■□□□□ 10.6
LIN28BQ6ZN17 DNAJC4-207ENST00000538961 534 ntTSL 513.57□□□□□ -0.247e-6■□□□□ 10.6
LIN28BQ6ZN17 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC13.06□□□□□ -0.327e-6■□□□□ 10.6
LIN28BQ6ZN17 WARS-208ENST00000553545 591 ntTSL 412.68□□□□□ -0.387e-6■□□□□ 10.6
LIN28BQ6ZN17 CWC22-202ENST00000410053 3280 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.497e-6■□□□□ 10.6
LIN28BQ6ZN17 WARS-228ENST00000556338 547 ntTSL 411.49□□□□□ -0.577e-6■□□□□ 10.6
LIN28BQ6ZN17 WARS-233ENST00000556660 584 ntTSL 411.49□□□□□ -0.577e-6■□□□□ 10.6
LIN28BQ6ZN17 WARS-235ENST00000556698 640 ntTSL 411.49□□□□□ -0.577e-6■□□□□ 10.6
LIN28BQ6ZN17 WARS-241ENST00000557347 577 ntTSL 411.49□□□□□ -0.577e-6■□□□□ 10.6
LIN28BQ6ZN17 WARS-211ENST00000553808 1060 ntTSL 29.78□□□□□ -0.847e-6■□□□□ 10.6
LIN28BQ6ZN17 WARS-219ENST00000554820 538 ntTSL 48.52□□□□□ -1.057e-6■□□□□ 10.6
LIN28BQ6ZN17 WARS-237ENST00000557094 582 ntTSL 27.58□□□□□ -1.27e-6■□□□□ 10.6
LIN28BQ6ZN17 WARS-227ENST00000556295 517 ntTSL 37.5□□□□□ -1.217e-6■□□□□ 10.6
LIN28BQ6ZN17 WARS-240ENST00000557297 821 ntTSL 36.77□□□□□ -1.337e-6■□□□□ 10.6
LIN28BQ6ZN17 ZNF718-201ENST00000510175 3495 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.337e-6■□□□□ 10.6
LIN28BQ6ZN17 WARS-213ENST00000554084 866 ntTSL 56.61□□□□□ -1.357e-6■□□□□ 10.6
LIN28BQ6ZN17 TMEM50B-202ENST00000432504 619 ntTSL 56.53□□□□□ -1.367e-6■□□□□ 10.6
LIN28BQ6ZN17 WARS-223ENST00000555410 677 ntTSL 55.56□□□□□ -1.527e-6■□□□□ 10.6
LIN28BQ6ZN17 CWC22-201ENST00000404136 2392 ntTSL 1 (best)5.21□□□□□ -1.587e-6■□□□□ 10.6
LIN28BQ6ZN17 WARS-225ENST00000555813 410 ntTSL 45.14□□□□□ -1.597e-6■□□□□ 10.6
LIN28BQ6ZN17 WARS-234ENST00000556695 553 ntTSL 45.12□□□□□ -1.597e-6■□□□□ 10.6
LIN28BQ6ZN17 WARS-226ENST00000556209 564 ntTSL 44.66□□□□□ -1.667e-6■□□□□ 10.6
LIN28BQ6ZN17 WARS-221ENST00000555031 658 ntTSL 24.62□□□□□ -1.677e-6■□□□□ 10.6
LIN28BQ6ZN17 TMEM50B-203ENST00000441128 634 ntTSL 54.56□□□□□ -1.687e-6■□□□□ 10.6
LIN28BQ6ZN17 TMEM50B-208ENST00000474272 518 ntTSL 33.85□□□□□ -1.797e-6■□□□□ 10.6
LIN28BQ6ZN17 FSCN1-205ENST00000473330 2215 ntTSL 219.53■□□□□ 0.721e-9■□□□□ 10.6
LIN28BQ6ZN17 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.211e-9■□□□□ 10.6
LIN28BQ6ZN17 NARS-207ENST00000587675 1002 ntTSL 219.5■□□□□ 0.711e-6■□□□□ 10.6
LIN28BQ6ZN17 NARS-202ENST00000411676 1097 ntTSL 214.84□□□□□ -0.031e-6■□□□□ 10.6
LIN28BQ6ZN17 NARS-212ENST00000591599 584 ntTSL 513.81□□□□□ -0.21e-6■□□□□ 10.6
LIN28BQ6ZN17 NARS-203ENST00000540592 937 ntTSL 213.81□□□□□ -0.21e-6■□□□□ 10.6
LIN28BQ6ZN17 NARS-208ENST00000588661 582 ntTSL 512.29□□□□□ -0.441e-6■□□□□ 10.6
LIN28BQ6ZN17 COPB1-211ENST00000534234 1584 ntTSL 510.2□□□□□ -0.784e-8■□□□□ 10.6
LIN28BQ6ZN17 COPB1-201ENST00000249923 3481 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.834e-8■□□□□ 10.6
LIN28BQ6ZN17 COPB1-202ENST00000439561 3382 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.064e-8■□□□□ 10.6
LIN28BQ6ZN17 PINK1-AS-201ENST00000451424 4443 ntTSL 2 BASIC9.1□□□□□ -0.951e-6■□□□□ 10.6
LIN28BQ6ZN17 KARS-212ENST00000570215 994 ntTSL 316.71■□□□□ 0.273e-10■□□□□ 10.6
LIN28BQ6ZN17 KARS-207ENST00000566560 1231 ntTSL 1 (best)12.54□□□□□ -0.43e-10■□□□□ 10.6
LIN28BQ6ZN17 KARS-210ENST00000568682 870 ntTSL 36.98□□□□□ -1.293e-10■□□□□ 10.6
LIN28BQ6ZN17 KARS-206ENST00000566249 649 ntTSL 55.5□□□□□ -1.533e-10■□□□□ 10.6
LIN28BQ6ZN17 KARS-208ENST00000566772 644 ntTSL 25.01□□□□□ -1.613e-10■□□□□ 10.6
LIN28BQ6ZN17 EXOSC7-207ENST00000481405 768 ntTSL 334.22■■■■□ 3.073e-10■□□□□ 10.6
LIN28BQ6ZN17 CLEC3B-203ENST00000490386 708 ntTSL 332.95■■■□□ 2.873e-10■□□□□ 10.6
LIN28BQ6ZN17 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC21.64■■□□□ 1.056e-8■□□□□ 10.6
LIN28BQ6ZN17 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.86e-8■□□□□ 10.6
LIN28BQ6ZN17 RMND5B-204ENST00000507575 2092 ntTSL 218.91■□□□□ 0.626e-8■□□□□ 10.6
LIN28BQ6ZN17 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.556e-8■□□□□ 10.6
LIN28BQ6ZN17 ATP5O-210ENST00000496044 673 ntTSL 218.12■□□□□ 0.496e-8■□□□□ 10.6
LIN28BQ6ZN17 ATP5O-207ENST00000487374 469 ntTSL 516.57■□□□□ 0.246e-8■□□□□ 10.6
LIN28BQ6ZN17 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.146e-8■□□□□ 10.6
LIN28BQ6ZN17 EXOSC7-210ENST00000491476 1395 ntTSL 515.79■□□□□ 0.123e-10■□□□□ 10.6
LIN28BQ6ZN17 EXOSC7-203ENST00000461361 1593 ntTSL 215.15■□□□□ 0.023e-10■□□□□ 10.6
LIN28BQ6ZN17 EXOSC7-205ENST00000468667 831 ntTSL 514.6□□□□□ -0.073e-10■□□□□ 10.6
LIN28BQ6ZN17 EXOSC7-201ENST00000265564 1055 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.083e-10■□□□□ 10.6
LIN28BQ6ZN17 ZNF451-207ENST00000444273 3402 ntTSL 1 (best)14.51□□□□□ -0.096e-8■□□□□ 10.6
LIN28BQ6ZN17 RMND5B-212ENST00000542098 1681 ntTSL 5 BASIC14.24□□□□□ -0.136e-8■□□□□ 10.6
LIN28BQ6ZN17 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.216e-8■□□□□ 10.6
LIN28BQ6ZN17 RMND5B-210ENST00000515098 4066 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.326e-8■□□□□ 10.6
LIN28BQ6ZN17 MATR3-231ENST00000502394 589 ntTSL 413.02□□□□□ -0.334e-19■□□□□ 10.6
LIN28BQ6ZN17 CCT3-212ENST00000478640 583 ntTSL 212.92□□□□□ -0.346e-9■□□□□ 10.6
LIN28BQ6ZN17 RMND5B-205ENST00000507937 2393 ntTSL 211.81□□□□□ -0.526e-8■□□□□ 10.6
LIN28BQ6ZN17 RMND5B-209ENST00000513162 4250 ntTSL 210.97□□□□□ -0.656e-8■□□□□ 10.6
LIN28BQ6ZN17 EXOSC7-209ENST00000486727 1647 ntTSL 210.73□□□□□ -0.693e-10■□□□□ 10.6
LIN28BQ6ZN17 MATR3-224ENST00000514488 564 ntTSL 410.11□□□□□ -0.794e-19■□□□□ 10.6
LIN28BQ6ZN17 RMND5B-211ENST00000515360 2820 ntTSL 210.1□□□□□ -0.796e-8■□□□□ 10.6
LIN28BQ6ZN17 CCT3-208ENST00000415548 513 ntTSL 39.45□□□□□ -0.96e-9■□□□□ 10.6
LIN28BQ6ZN17 ATP5O-206ENST00000484627 157 ntTSL 1 (best)8.21□□□□□ -1.16e-8■□□□□ 10.6
LIN28BQ6ZN17 ATP6V0E1-201ENST00000265093 773 ntTSL 2 BASIC7.31□□□□□ -1.246e-8■□□□□ 10.6
LIN28BQ6ZN17 ZNF451-211ENST00000504603 561 ntTSL 54.85□□□□□ -1.636e-8■□□□□ 10.6
LIN28BQ6ZN17 FYTTD1-209ENST00000494309 719 ntTSL 54□□□□□ -1.773e-7■□□□□ 10.6
LIN28BQ6ZN17 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC1.96□□□□□ -2.16e-8■□□□□ 10.6
LIN28BQ6ZN17 AES-210ENST00000590067 1100 ntTSL 219.68■□□□□ 0.746e-10■□□□□ 10.6
LIN28BQ6ZN17 DDX3X-206ENST00000542215 1592 ntTSL 220.9■□□□□ 0.943e-9■□□□□ 10.6
LIN28BQ6ZN17 DDX3X-212ENST00000616050 818 ntTSL 513.04□□□□□ -0.323e-9■□□□□ 10.6
LIN28BQ6ZN17 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.453e-9■□□□□ 10.6
LIN28BQ6ZN17 DDX3X-215ENST00000625837 3237 ntTSL 5 BASIC10.8□□□□□ -0.683e-9■□□□□ 10.6
LIN28BQ6ZN17 DDX3X-216ENST00000626301 3013 ntTSL 5 BASIC10.61□□□□□ -0.713e-9■□□□□ 10.6
LIN28BQ6ZN17 DDX3X-203ENST00000457138 5346 ntTSL 2 BASIC10.45□□□□□ -0.743e-9■□□□□ 10.6
LIN28BQ6ZN17 DDX3X-220ENST00000630370 3120 ntTSL 59.96□□□□□ -0.823e-9■□□□□ 10.6
LIN28BQ6ZN17 DDX3X-217ENST00000629496 5023 ntAPPRIS P1 TSL 5 BASIC9.79□□□□□ -0.843e-9■□□□□ 10.6
LIN28BQ6ZN17 DDX3X-218ENST00000629785 3457 ntTSL 59.59□□□□□ -0.873e-9■□□□□ 10.6
LIN28BQ6ZN17 DDX3X-202ENST00000441189 1051 ntTSL 2 BASIC9.45□□□□□ -0.93e-9■□□□□ 10.6
LIN28BQ6ZN17 DDX3X-219ENST00000630255 3289 ntTSL 59.17□□□□□ -0.943e-9■□□□□ 10.6
LIN28BQ6ZN17 DDX3X-221ENST00000630858 3181 ntTSL 59.1□□□□□ -0.953e-9■□□□□ 10.6
LIN28BQ6ZN17 DDX3X-204ENST00000478993 3397 ntTSL 1 (best)8.75□□□□□ -1.013e-9■□□□□ 10.6
LIN28BQ6ZN17 ESS2-202ENST00000434568 1808 ntTSL 521.36■■□□□ 1.011e-6■□□□□ 10.6
LIN28BQ6ZN17 ESS2-204ENST00000472073 2101 ntTSL 517.31■□□□□ 0.361e-6■□□□□ 10.6
LIN28BQ6ZN17 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.091e-6■□□□□ 10.6
Retrieved 100 of 21,972 protein–RNA pairs in 462.2 ms