Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
RFC3P40938 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
RFC3P40938 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RFC3P40938 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
RFC3P40938 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
RFC3P40938 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC21.71■■□□□ 1.07
RFC3P40938 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC21.71■■□□□ 1.07
RFC3P40938 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
RFC3P40938 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
RFC3P40938 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
RFC3P40938 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
RFC3P40938 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC21.71■■□□□ 1.07
RFC3P40938 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
RFC3P40938 GUSBP5-201ENST00000418136 578 ntBASIC21.7■■□□□ 1.06
RFC3P40938 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC21.7■■□□□ 1.06
RFC3P40938 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
RFC3P40938 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
RFC3P40938 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
RFC3P40938 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21.69■■□□□ 1.06
RFC3P40938 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC21.69■■□□□ 1.06
RFC3P40938 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
RFC3P40938 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.68■■□□□ 1.06
RFC3P40938 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC21.68■■□□□ 1.06
RFC3P40938 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
RFC3P40938 SNAI3-AS1-204ENST00000567997 2048 ntBASIC21.68■■□□□ 1.06
RFC3P40938 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
RFC3P40938 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
RFC3P40938 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC21.67■■□□□ 1.06
RFC3P40938 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
RFC3P40938 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RFC3P40938 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC21.67■■□□□ 1.06
RFC3P40938 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC21.67■■□□□ 1.06
RFC3P40938 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RFC3P40938 ERN1-208ENST00000606895 2068 ntBASIC21.67■■□□□ 1.06
RFC3P40938 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC21.66■■□□□ 1.06
RFC3P40938 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.66■■□□□ 1.06
RFC3P40938 AC022616.5-201ENST00000518796 181 ntBASIC21.66■■□□□ 1.06
RFC3P40938 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.66■■□□□ 1.06
RFC3P40938 THA1P-201ENST00000590384 1145 ntBASIC21.66■■□□□ 1.06
RFC3P40938 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.66■■□□□ 1.06
RFC3P40938 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RFC3P40938 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RFC3P40938 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RFC3P40938 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RFC3P40938 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
RFC3P40938 AL121749.1-202ENST00000609313 2153 ntBASIC21.65■■□□□ 1.06
RFC3P40938 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC21.65■■□□□ 1.06
RFC3P40938 SHF-207ENST00000560540 2062 ntTSL 5 BASIC21.64■■□□□ 1.05
RFC3P40938 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
RFC3P40938 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.05
RFC3P40938 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.64■■□□□ 1.05
RFC3P40938 AC120024.1-201ENST00000562672 995 ntBASIC21.64■■□□□ 1.05
RFC3P40938 AC131212.1-201ENST00000613771 668 ntBASIC21.64■■□□□ 1.05
RFC3P40938 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
RFC3P40938 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC21.63■■□□□ 1.05
RFC3P40938 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RFC3P40938 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
RFC3P40938 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
RFC3P40938 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC21.62■■□□□ 1.05
RFC3P40938 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
RFC3P40938 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
RFC3P40938 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
RFC3P40938 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
RFC3P40938 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
RFC3P40938 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC21.62■■□□□ 1.05
RFC3P40938 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC21.62■■□□□ 1.05
RFC3P40938 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.62■■□□□ 1.05
RFC3P40938 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
RFC3P40938 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
RFC3P40938 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
RFC3P40938 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
RFC3P40938 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
RFC3P40938 CREM-210ENST00000374721 2020 ntTSL 5 BASIC21.6■■□□□ 1.05
RFC3P40938 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
RFC3P40938 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RFC3P40938 KRT18P24-201ENST00000344739 1156 ntBASIC21.6■■□□□ 1.05
RFC3P40938 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
RFC3P40938 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
RFC3P40938 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC21.6■■□□□ 1.05
RFC3P40938 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
RFC3P40938 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RFC3P40938 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RFC3P40938 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
RFC3P40938 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC21.59■■□□□ 1.05
RFC3P40938 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
RFC3P40938 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
RFC3P40938 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RFC3P40938 BX664725.1-201ENST00000438252 379 ntBASIC21.59■■□□□ 1.05
RFC3P40938 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC21.59■■□□□ 1.05
RFC3P40938 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RFC3P40938 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
RFC3P40938 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
RFC3P40938 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
RFC3P40938 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
RFC3P40938 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
RFC3P40938 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC21.58■■□□□ 1.05
RFC3P40938 AL592295.1-201ENST00000400984 884 ntBASIC21.58■■□□□ 1.05
RFC3P40938 AL356441.2-201ENST00000443009 864 ntBASIC21.58■■□□□ 1.05
RFC3P40938 KRT125P-201ENST00000546827 989 ntBASIC21.58■■□□□ 1.05
RFC3P40938 Z92544.1-202ENST00000571933 1220 ntBASIC21.58■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms