Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 MDM4-215ENST00000614459 9782 ntTSL 5 BASIC7.18□□□□□ -1.261e-7■□□□□ 9.1
UPF1Q92900 MDM4-204ENST00000367183 9098 ntTSL 1 (best) BASIC7.08□□□□□ -1.281e-7■□□□□ 9.1
UPF1Q92900 MDM4-203ENST00000367182 10073 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.331e-7■□□□□ 9.1
UPF1Q92900 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC6.52□□□□□ -1.371e-7■□□□□ 9.1
UPF1Q92900 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC27.9■■■□□ 2.069e-6■□□□□ 9.1
UPF1Q92900 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC24.57■■□□□ 1.529e-6■□□□□ 9.1
UPF1Q92900 ASGR1-207ENST00000574330 887 ntTSL 524.33■■□□□ 1.499e-6■□□□□ 9.1
UPF1Q92900 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC22.66■■□□□ 1.221e-9■□□□□ 9.1
UPF1Q92900 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.79e-6■□□□□ 9.1
UPF1Q92900 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.41■□□□□ 0.79e-6■□□□□ 9.1
UPF1Q92900 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC18.89■□□□□ 0.619e-6■□□□□ 9.1
UPF1Q92900 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.417e-7■□□□□ 9.1
UPF1Q92900 SEC62-207ENST00000480708 1430 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.679e-6■□□□□ 9.1
UPF1Q92900 SEC62-201ENST00000337002 6568 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.019e-6■□□□□ 9.1
UPF1Q92900 AC138811.2-201ENST00000567078 764 ntAPPRIS P1 TSL 3 BASIC8.66□□□□□ -1.027e-7■□□□□ 9.1
UPF1Q92900 ETV4-208ENST00000586826 917 ntTSL 1 (best) BASIC18.45■□□□□ 0.547e-8■□□□□ 9.1
UPF1Q92900 ASB1-208ENST00000481566 701 ntTSL 522.57■■□□□ 1.26e-8■□□□□ 9.1
UPF1Q92900 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.372e-35■□□□□ 9.1
UPF1Q92900 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.236e-8■□□□□ 9.1
UPF1Q92900 HNRNPA3-202ENST00000411529 5688 ntAPPRIS ALT2 TSL 2 BASIC10.16□□□□□ -0.781e-18■□□□□ 9.1
UPF1Q92900 ACLY-207ENST00000590151 4309 ntAPPRIS P4 TSL 1 (best) BASIC9.88□□□□□ -0.833e-8■□□□□ 9.1
UPF1Q92900 ACLY-202ENST00000353196 4318 ntAPPRIS ALT1 TSL 5 BASIC9.83□□□□□ -0.843e-8■□□□□ 9.1
UPF1Q92900 ACLY-201ENST00000352035 4339 ntAPPRIS P4 TSL 1 (best) BASIC9.46□□□□□ -0.93e-8■□□□□ 9.1
UPF1Q92900 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.054e-12■□□□□ 9.1
UPF1Q92900 CACYBP-209ENST00000613570 2835 ntTSL 2 BASIC8.83□□□□□ -14e-12■□□□□ 9.1
UPF1Q92900 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.782e-14■□□□□ 9.1
UPF1Q92900 SRP72-205ENST00000510663 2473 ntTSL 1 (best) BASIC15.66■□□□□ 0.11e-7■□□□□ 9.1
UPF1Q92900 GPATCH11-202ENST00000409774 3906 ntAPPRIS P1 TSL 2 BASIC8.8□□□□□ -11e-7■□□□□ 9.1
UPF1Q92900 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC7.53□□□□□ -1.21e-7■□□□□ 9.1
UPF1Q92900 AL132671.2-201ENST00000467125 930 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.131e-6■□□□□ 9.1
UPF1Q92900 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC15.13■□□□□ 0.011e-6■□□□□ 9.1
UPF1Q92900 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.091e-6■□□□□ 9.1
UPF1Q92900 GOPC-202ENST00000368498 4450 ntTSL 1 (best) BASIC12.99□□□□□ -0.331e-6■□□□□ 9.1
UPF1Q92900 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.882e-7■□□□□ 9.1
UPF1Q92900 FOPNL-206ENST00000573968 2039 ntTSL 2 BASIC9.1□□□□□ -0.952e-7■□□□□ 9.1
UPF1Q92900 PIP4K2B-202ENST00000617499 547 ntTSL 427.77■■■□□ 2.042e-7■□□□□ 9
UPF1Q92900 PIP4K2B-203ENST00000617781 927 ntTSL 217.01■□□□□ 0.312e-7■□□□□ 9
UPF1Q92900 RPL23-203ENST00000394332 625 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.282e-7■□□□□ 9
UPF1Q92900 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.65■□□□□ 0.262e-7■□□□□ 9
UPF1Q92900 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.162e-7■□□□□ 9
UPF1Q92900 RPL23-204ENST00000394333 444 ntTSL 2 BASIC15.92■□□□□ 0.142e-7■□□□□ 9
UPF1Q92900 RPL23-206ENST00000479035 2821 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.452e-7■□□□□ 9
UPF1Q92900 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC29.46■■■□□ 2.313e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC27.27■■□□□ 1.963e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-224ENST00000581718 574 ntTSL 226.89■■□□□ 1.93e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-228ENST00000584141 564 ntTSL 226.89■■□□□ 1.93e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC25.98■■□□□ 1.753e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-203ENST00000472367 794 ntTSL 325.12■■□□□ 1.613e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-212ENST00000483588 688 ntTSL 323.61■■□□□ 1.373e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-229ENST00000584177 574 ntTSL 423.38■■□□□ 1.333e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC19.83■□□□□ 0.773e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC19.83■□□□□ 0.773e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC19.47■□□□□ 0.713e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-215ENST00000491009 863 ntTSL 219.26■□□□□ 0.673e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-206ENST00000477249 891 ntTSL 518.91■□□□□ 0.623e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-219ENST00000578757 920 ntTSL 1 (best)18.91■□□□□ 0.623e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC18.82■□□□□ 0.63e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-208ENST00000480811 968 ntTSL 2 BASIC18.46■□□□□ 0.553e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-217ENST00000497774 1662 ntTSL 516.43■□□□□ 0.223e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-227ENST00000583400 712 ntTSL 416.21■□□□□ 0.193e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-207ENST00000478103 712 ntTSL 315.19■□□□□ 0.023e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-201ENST00000460249 773 ntTSL 315.14■□□□□ 0.013e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-204ENST00000475947 598 ntTSL 215.14■□□□□ 0.013e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-222ENST00000580770 572 ntTSL 415.14■□□□□ 0.013e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-223ENST00000581361 843 ntTSL 1 (best) BASIC14.27□□□□□ -0.133e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-221ENST00000580180 753 ntTSL 213.97□□□□□ -0.173e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-210ENST00000481898 993 ntTSL 1 (best)12.61□□□□□ -0.393e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-230ENST00000584926 604 ntTSL 512.61□□□□□ -0.393e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-220ENST00000579473 585 ntTSL 4 BASIC12.11□□□□□ -0.473e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-216ENST00000492250 565 ntTSL 511.66□□□□□ -0.543e-61■□□□□ 9
UPF1Q92900 LRRC75A-AS1-211ENST00000483140 936 ntTSL 26.71□□□□□ -1.343e-61■□□□□ 9
UPF1Q92900 CDK12-201ENST00000430627 5918 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.233e-9■□□□□ 9
UPF1Q92900 CDK12-208ENST00000584336 1963 nt12.91□□□□□ -0.343e-9■□□□□ 9
UPF1Q92900 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC23.75■■□□□ 1.396e-9■□□□□ 9
UPF1Q92900 NOP58-202ENST00000426814 655 ntTSL 221.27■■□□□ 16e-9■□□□□ 9
UPF1Q92900 NOP58-208ENST00000488403 871 ntTSL 221.27■■□□□ 16e-9■□□□□ 9
UPF1Q92900 NOP58-205ENST00000472050 582 ntTSL 318.21■□□□□ 0.516e-9■□□□□ 9
UPF1Q92900 SMIM30-201ENST00000397764 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.176e-9■□□□□ 9
UPF1Q92900 NOP58-204ENST00000467734 638 ntTSL 515.88■□□□□ 0.136e-9■□□□□ 9
UPF1Q92900 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.046e-9■□□□□ 9
UPF1Q92900 SMIM30-204ENST00000441359 962 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.156e-9■□□□□ 9
UPF1Q92900 UBBP4-201ENST00000583708 689 ntBASIC12.15□□□□□ -0.461e-8■□□□□ 9
UPF1Q92900 SNHG16-207ENST00000590435 1947 ntTSL 5 BASIC12.11□□□□□ -0.476e-9■□□□□ 9
UPF1Q92900 SNHG16-202ENST00000493536 2424 ntTSL 1 (best)10.31□□□□□ -0.766e-9■□□□□ 9
UPF1Q92900 NOP58-209ENST00000492688 571 ntTSL 410.12□□□□□ -0.796e-9■□□□□ 9
UPF1Q92900 GNL3L-202ENST00000360845 2135 ntAPPRIS P1 TSL 5 BASIC10.06□□□□□ -0.82e-6■□□□□ 9
UPF1Q92900 SNHG16-201ENST00000448136 3607 ntTSL 1 (best) BASIC9.56□□□□□ -0.886e-9■□□□□ 9
UPF1Q92900 EZH1-201ENST00000415827 4608 ntTSL 1 (best) BASIC9.04□□□□□ -0.962e-6■□□□□ 9
UPF1Q92900 EZH1-202ENST00000428826 4623 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.162e-6■□□□□ 9
UPF1Q92900 SUMF2-214ENST00000452216 913 ntTSL 1 (best)27.07■■□□□ 1.923e-6■□□□□ 9
UPF1Q92900 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC22.88■■□□□ 1.253e-6■□□□□ 9
UPF1Q92900 SUMF2-219ENST00000531229 737 ntTSL 220.53■□□□□ 0.883e-6■□□□□ 9
UPF1Q92900 UGGT1-203ENST00000418197 599 ntTSL 514.06□□□□□ -0.163e-6■□□□□ 9
UPF1Q92900 UGGT1-206ENST00000465836 517 ntTSL 28.48□□□□□ -1.053e-6■□□□□ 9
UPF1Q92900 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC34.2■■■■□ 3.072e-6■□□□□ 9
UPF1Q92900 KCTD15-204ENST00000587658 632 ntTSL 333.72■■■□□ 2.992e-6■□□□□ 9
UPF1Q92900 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC27.25■■□□□ 1.952e-6■□□□□ 9
UPF1Q92900 KCTD15-205ENST00000588637 571 ntTSL 524.99■■□□□ 1.592e-6■□□□□ 9
UPF1Q92900 KCTD15-209ENST00000590771 577 ntTSL 322.77■■□□□ 1.242e-6■□□□□ 9
UPF1Q92900 KCTD15-203ENST00000587559 622 ntTSL 421.75■■□□□ 1.072e-6■□□□□ 9
Retrieved 100 of 15,879 protein–RNA pairs in 302.7 ms