Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC17.77■□□□□ 0.44
LSM1O15116 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
LSM1O15116 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.77■□□□□ 0.43
LSM1O15116 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
LSM1O15116 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
LSM1O15116 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.77■□□□□ 0.43
LSM1O15116 REXO1L9P-201ENST00000604264 2108 ntBASIC17.77■□□□□ 0.43
LSM1O15116 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LSM1O15116 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LSM1O15116 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
LSM1O15116 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
LSM1O15116 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
LSM1O15116 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
LSM1O15116 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LSM1O15116 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LSM1O15116 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
LSM1O15116 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
LSM1O15116 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LSM1O15116 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
LSM1O15116 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.76■□□□□ 0.43
LSM1O15116 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC17.76■□□□□ 0.43
LSM1O15116 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
LSM1O15116 KRT18P29-201ENST00000397031 1267 ntBASIC17.76■□□□□ 0.43
LSM1O15116 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LSM1O15116 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.76■□□□□ 0.43
LSM1O15116 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.76■□□□□ 0.43
LSM1O15116 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC17.76■□□□□ 0.43
LSM1O15116 SLC25A1P4-201ENST00000567977 778 ntBASIC17.76■□□□□ 0.43
LSM1O15116 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC17.76■□□□□ 0.43
LSM1O15116 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.76■□□□□ 0.43
LSM1O15116 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LSM1O15116 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LSM1O15116 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LSM1O15116 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.76■□□□□ 0.43
LSM1O15116 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LSM1O15116 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LSM1O15116 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.76■□□□□ 0.43
LSM1O15116 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC17.76■□□□□ 0.43
LSM1O15116 AC034236.2-201ENST00000606662 1610 ntBASIC17.76■□□□□ 0.43
LSM1O15116 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
LSM1O15116 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.76■□□□□ 0.43
LSM1O15116 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.76■□□□□ 0.43
LSM1O15116 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LSM1O15116 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LSM1O15116 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LSM1O15116 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.75■□□□□ 0.43
LSM1O15116 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
LSM1O15116 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LSM1O15116 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
LSM1O15116 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.75■□□□□ 0.43
LSM1O15116 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LSM1O15116 KRT8P50-201ENST00000562022 1438 ntBASIC17.75■□□□□ 0.43
LSM1O15116 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LSM1O15116 PRORSD1P-201ENST00000295112 541 ntBASIC17.75■□□□□ 0.43
LSM1O15116 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LSM1O15116 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LSM1O15116 TSPY20P-201ENST00000450910 630 ntBASIC17.75■□□□□ 0.43
LSM1O15116 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC17.75■□□□□ 0.43
LSM1O15116 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.75■□□□□ 0.43
LSM1O15116 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC17.75■□□□□ 0.43
LSM1O15116 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC17.75■□□□□ 0.43
LSM1O15116 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
LSM1O15116 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LSM1O15116 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LSM1O15116 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LSM1O15116 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LSM1O15116 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
LSM1O15116 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LSM1O15116 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.75■□□□□ 0.43
LSM1O15116 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LSM1O15116 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LSM1O15116 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC17.74■□□□□ 0.43
LSM1O15116 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
LSM1O15116 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LSM1O15116 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
LSM1O15116 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LSM1O15116 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.74■□□□□ 0.43
LSM1O15116 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LSM1O15116 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LSM1O15116 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.74■□□□□ 0.43
LSM1O15116 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LSM1O15116 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LSM1O15116 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LSM1O15116 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LSM1O15116 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.74■□□□□ 0.43
LSM1O15116 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
LSM1O15116 CA15P1-201ENST00000481698 905 ntBASIC17.74■□□□□ 0.43
LSM1O15116 FDX2-206ENST00000492239 773 ntTSL 2 BASIC17.74■□□□□ 0.43
LSM1O15116 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
LSM1O15116 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
LSM1O15116 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
LSM1O15116 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
LSM1O15116 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
LSM1O15116 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
LSM1O15116 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LSM1O15116 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.73■□□□□ 0.43
LSM1O15116 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LSM1O15116 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LSM1O15116 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LSM1O15116 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms