Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 AC239859.2-201ENST00000444165 318 ntBASIC27.02■■□□□ 1.92
CDX2Q99626 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
CDX2Q99626 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
CDX2Q99626 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC27.01■■□□□ 1.91
CDX2Q99626 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC27.01■■□□□ 1.91
CDX2Q99626 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC27.01■■□□□ 1.91
CDX2Q99626 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC27.01■■□□□ 1.91
CDX2Q99626 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC27.01■■□□□ 1.91
CDX2Q99626 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
CDX2Q99626 AL161658.1-201ENST00000623641 1967 ntBASIC27■■□□□ 1.91
CDX2Q99626 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
CDX2Q99626 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC26.99■■□□□ 1.91
CDX2Q99626 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
CDX2Q99626 GRAMD4P7-201ENST00000578182 1232 ntBASIC26.98■■□□□ 1.91
CDX2Q99626 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC26.98■■□□□ 1.91
CDX2Q99626 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
CDX2Q99626 RNF146-205ENST00000477776 762 ntTSL 3 BASIC26.97■■□□□ 1.91
CDX2Q99626 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC26.97■■□□□ 1.91
CDX2Q99626 RAP2CP1-202ENST00000605179 643 ntBASIC26.97■■□□□ 1.91
CDX2Q99626 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
CDX2Q99626 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC26.96■■□□□ 1.91
CDX2Q99626 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC26.95■■□□□ 1.9
CDX2Q99626 AC093536.1-201ENST00000569153 554 ntBASIC26.95■■□□□ 1.9
CDX2Q99626 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
CDX2Q99626 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
CDX2Q99626 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
CDX2Q99626 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
CDX2Q99626 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC26.94■■□□□ 1.9
CDX2Q99626 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC26.94■■□□□ 1.9
CDX2Q99626 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC26.94■■□□□ 1.9
CDX2Q99626 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC26.94■■□□□ 1.9
CDX2Q99626 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC26.93■■□□□ 1.9
CDX2Q99626 IDNK-201ENST00000376417 511 ntTSL 5 BASIC26.93■■□□□ 1.9
CDX2Q99626 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
CDX2Q99626 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC26.93■■□□□ 1.9
CDX2Q99626 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
CDX2Q99626 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
CDX2Q99626 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC26.92■■□□□ 1.9
CDX2Q99626 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
CDX2Q99626 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
CDX2Q99626 CREM-229ENST00000474362 1030 ntTSL 2 BASIC26.91■■□□□ 1.9
CDX2Q99626 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC26.91■■□□□ 1.9
CDX2Q99626 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC26.91■■□□□ 1.9
CDX2Q99626 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC26.9■■□□□ 1.9
CDX2Q99626 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
CDX2Q99626 AC018755.3-202ENST00000596210 929 ntBASIC26.9■■□□□ 1.9
CDX2Q99626 RALB-208ENST00000631312 311 ntTSL 5 BASIC26.9■■□□□ 1.9
CDX2Q99626 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
CDX2Q99626 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
CDX2Q99626 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC26.89■■□□□ 1.9
CDX2Q99626 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC26.89■■□□□ 1.9
CDX2Q99626 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
CDX2Q99626 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC26.89■■□□□ 1.9
CDX2Q99626 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC26.88■■□□□ 1.89
CDX2Q99626 AL139246.5-201ENST00000606645 996 ntBASIC26.88■■□□□ 1.89
CDX2Q99626 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC26.88■■□□□ 1.89
CDX2Q99626 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC26.88■■□□□ 1.89
CDX2Q99626 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC26.88■■□□□ 1.89
CDX2Q99626 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC26.87■■□□□ 1.89
CDX2Q99626 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC26.87■■□□□ 1.89
CDX2Q99626 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
CDX2Q99626 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC26.87■■□□□ 1.89
CDX2Q99626 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
CDX2Q99626 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC26.85■■□□□ 1.89
CDX2Q99626 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC26.85■■□□□ 1.89
CDX2Q99626 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC26.85■■□□□ 1.89
CDX2Q99626 AC092666.2-201ENST00000613287 246 ntBASIC26.85■■□□□ 1.89
CDX2Q99626 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
CDX2Q99626 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
CDX2Q99626 Z92544.1-202ENST00000571933 1220 ntBASIC26.84■■□□□ 1.89
CDX2Q99626 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC26.84■■□□□ 1.89
CDX2Q99626 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC26.84■■□□□ 1.89
CDX2Q99626 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC26.83■■□□□ 1.89
CDX2Q99626 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
CDX2Q99626 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC26.83■■□□□ 1.89
CDX2Q99626 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC26.83■■□□□ 1.89
CDX2Q99626 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC26.82■■□□□ 1.88
CDX2Q99626 NALT1-201ENST00000429224 738 ntTSL 5 BASIC26.82■■□□□ 1.88
CDX2Q99626 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC26.82■■□□□ 1.88
CDX2Q99626 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC26.82■■□□□ 1.88
CDX2Q99626 AL359258.2-201ENST00000564063 1566 ntBASIC26.81■■□□□ 1.88
CDX2Q99626 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC26.81■■□□□ 1.88
CDX2Q99626 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
CDX2Q99626 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC26.81■■□□□ 1.88
CDX2Q99626 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC26.81■■□□□ 1.88
CDX2Q99626 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC26.8■■□□□ 1.88
CDX2Q99626 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
CDX2Q99626 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC26.8■■□□□ 1.88
CDX2Q99626 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC26.8■■□□□ 1.88
CDX2Q99626 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
CDX2Q99626 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC26.79■■□□□ 1.88
CDX2Q99626 MTX2-204ENST00000443241 799 ntTSL 3 BASIC26.79■■□□□ 1.88
CDX2Q99626 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
CDX2Q99626 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
CDX2Q99626 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
CDX2Q99626 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC26.77■■□□□ 1.88
CDX2Q99626 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
CDX2Q99626 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
CDX2Q99626 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
CDX2Q99626 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms