Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
LSM1O15116 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
LSM1O15116 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
LSM1O15116 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC17.85■□□□□ 0.45
LSM1O15116 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC17.85■□□□□ 0.45
LSM1O15116 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LSM1O15116 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LSM1O15116 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.85■□□□□ 0.45
LSM1O15116 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.85■□□□□ 0.45
LSM1O15116 IRX5-204ENST00000560154 879 ntTSL 5 BASIC17.85■□□□□ 0.45
LSM1O15116 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC17.85■□□□□ 0.45
LSM1O15116 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
LSM1O15116 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LSM1O15116 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LSM1O15116 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.85■□□□□ 0.45
LSM1O15116 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
LSM1O15116 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LSM1O15116 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.85■□□□□ 0.45
LSM1O15116 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LSM1O15116 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LSM1O15116 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LSM1O15116 ESPNP-201ENST00000270691 2015 ntBASIC17.84■□□□□ 0.45
LSM1O15116 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
LSM1O15116 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LSM1O15116 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
LSM1O15116 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC17.84■□□□□ 0.45
LSM1O15116 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.84■□□□□ 0.45
LSM1O15116 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LSM1O15116 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LSM1O15116 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC17.84■□□□□ 0.45
LSM1O15116 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
LSM1O15116 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LSM1O15116 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC17.84■□□□□ 0.45
LSM1O15116 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
LSM1O15116 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LSM1O15116 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC17.84■□□□□ 0.45
LSM1O15116 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LSM1O15116 SAPCD2P4-201ENST00000424595 1171 ntBASIC17.84■□□□□ 0.45
LSM1O15116 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
LSM1O15116 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC17.84■□□□□ 0.45
LSM1O15116 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC17.84■□□□□ 0.45
LSM1O15116 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC17.84■□□□□ 0.45
LSM1O15116 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC17.84■□□□□ 0.45
LSM1O15116 FAM197Y4-202ENST00000622692 608 ntBASIC17.84■□□□□ 0.45
LSM1O15116 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC17.84■□□□□ 0.45
LSM1O15116 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.84■□□□□ 0.45
LSM1O15116 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.84■□□□□ 0.45
LSM1O15116 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LSM1O15116 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LSM1O15116 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
LSM1O15116 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
LSM1O15116 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.83■□□□□ 0.45
LSM1O15116 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.83■□□□□ 0.45
LSM1O15116 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LSM1O15116 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC17.83■□□□□ 0.45
LSM1O15116 AP000997.3-201ENST00000623333 2250 ntBASIC17.83■□□□□ 0.45
LSM1O15116 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.83■□□□□ 0.45
LSM1O15116 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.83■□□□□ 0.45
LSM1O15116 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.83■□□□□ 0.45
LSM1O15116 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.83■□□□□ 0.45
LSM1O15116 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
LSM1O15116 AC096733.2-201ENST00000609937 1394 ntBASIC17.83■□□□□ 0.45
LSM1O15116 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
LSM1O15116 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LSM1O15116 SRI-203ENST00000419179 1307 ntTSL 2 BASIC17.83■□□□□ 0.44
LSM1O15116 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LSM1O15116 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
LSM1O15116 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.83■□□□□ 0.44
LSM1O15116 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LSM1O15116 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LSM1O15116 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.44
LSM1O15116 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC17.83■□□□□ 0.44
LSM1O15116 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LSM1O15116 FAM197Y1-201ENST00000421178 764 ntBASIC17.83■□□□□ 0.44
LSM1O15116 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC17.83■□□□□ 0.44
LSM1O15116 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
LSM1O15116 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC17.83■□□□□ 0.44
LSM1O15116 CFL2-205ENST00000555765 632 ntTSL 2 BASIC17.83■□□□□ 0.44
LSM1O15116 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC17.83■□□□□ 0.44
LSM1O15116 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC17.83■□□□□ 0.44
LSM1O15116 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC17.83■□□□□ 0.44
LSM1O15116 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC17.83■□□□□ 0.44
LSM1O15116 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.83■□□□□ 0.44
LSM1O15116 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
LSM1O15116 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
LSM1O15116 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LSM1O15116 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LSM1O15116 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LSM1O15116 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LSM1O15116 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
LSM1O15116 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LSM1O15116 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LSM1O15116 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LSM1O15116 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LSM1O15116 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.83■□□□□ 0.44
LSM1O15116 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LSM1O15116 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.82■□□□□ 0.44
LSM1O15116 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LSM1O15116 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LSM1O15116 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 186.8 ms