RNA–Protein interactions for RNA: ENST00000642041.1

PHGDH-234, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 943 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-234ENST00000642041 NISCHQ9Y2I1 1504 aa40.87■■■■■ 4.13
PHGDH-234ENST00000642041 ABCC9O60706 1549 aa38.08■■■■□ 3.69
PHGDH-234ENST00000642041 CCDC180Q9P1Z9 1646 aa37.08■■■■□ 3.53
PHGDH-234ENST00000642041 DNAJC5BQ9UF47 199 aa36.69■■■■□ 3.46
PHGDH-234ENST00000642041 RB1CC1Q8TDY2 1594 aa35.81■■■■□ 3.32
PHGDH-234ENST00000642041 NACADO15069 1562 aa35.34■■■■□ 3.25
PHGDH-234ENST00000642041 PABPN1Q86U42 306 aaKnown RBP eCLIP35.32■■■■□ 3.24
PHGDH-234ENST00000642041 UNC13AQ9UPW8 1703 aa34.95■■■■□ 3.18
PHGDH-234ENST00000642041 DCAF8L2P0C7V8 631 aa34.94■■■■□ 3.18
PHGDH-234ENST00000642041 BICRAQ9NZM4 1560 aa34.8■■■■□ 3.16
PHGDH-234ENST00000642041 MYO15BQ96JP2 1530 aa34.55■■■■□ 3.12
PHGDH-234ENST00000642041 DNAJC5Q9H3Z4 198 aa34.48■■■■□ 3.11
PHGDH-234ENST00000642041 CECR2Q9BXF3 1484 aa34.44■■■■□ 3.1
PHGDH-234ENST00000642041 CC2D2AQ9P2K1 1620 aa34.35■■■■□ 3.09
PHGDH-234ENST00000642041 SHROOM4Q9ULL8 1493 aa34.27■■■■□ 3.08
PHGDH-234ENST00000642041 EIF4G1Q04637 1599 aaKnown RBP34.03■■■■□ 3.04
PHGDH-234ENST00000642041 DCAF1Q9Y4B6 1507 aa33.72■■■□□ 2.99
PHGDH-234ENST00000642041 SCRIBQ14160 1630 aa33.69■■■□□ 2.98
PHGDH-234ENST00000642041 ZCCHC6Q5VYS8 1495 aaKnown RBP33.63■■■□□ 2.97
PHGDH-234ENST00000642041 CUX2O14529 1486 aa33.29■■■□□ 2.92
PHGDH-234ENST00000642041 ERCC6Q03468 1493 aa32.96■■■□□ 2.87
PHGDH-234ENST00000642041 NCAPD3P42695 1498 aa32.67■■■□□ 2.82
PHGDH-234ENST00000642041 TRIM41Q8WV44 630 aa32.48■■■□□ 2.79
PHGDH-234ENST00000642041 NESP48681 1621 aa32.42■■■□□ 2.78
PHGDH-234ENST00000642041 ATAD2BQ9ULI0 1458 aa32.41■■■□□ 2.78
PHGDH-234ENST00000642041 HMGXB3Q12766 1538 aa32.29■■■□□ 2.76
PHGDH-234ENST00000642041 THOC2Q8NI27 1593 aaKnown RBP32.28■■■□□ 2.76
PHGDH-234ENST00000642041 SMARCA2P51531 1590 aa32.24■■■□□ 2.75
PHGDH-234ENST00000642041 SMARCA4P51532 1647 aa32.06■■■□□ 2.72
PHGDH-234ENST00000642041 LAMC3Q9Y6N6 1575 aa32.05■■■□□ 2.72
PHGDH-234ENST00000642041 BAZ1BQ9UIG0 1483 aaKnown RBP32■■■□□ 2.71
PHGDH-234ENST00000642041 PDS5BQ9NTI5 1447 aa31.94■■■□□ 2.7
PHGDH-234ENST00000642041 KIF21AQ7Z4S6 1674 aa31.93■■■□□ 2.7
PHGDH-234ENST00000642041 PEG3Q9GZU2 1588 aa31.8■■■□□ 2.68
PHGDH-234ENST00000642041 BAZ1AQ9NRL2 1556 aaPredicted RBP31.77■■■□□ 2.68
PHGDH-234ENST00000642041 MRC2Q9UBG0 1479 aa31.69■■■□□ 2.66
PHGDH-234ENST00000642041 WDR62O43379 1518 aa31.64■■■□□ 2.66
PHGDH-234ENST00000642041 OSCARQ8IYS5 282 aa31.63■■■□□ 2.65
PHGDH-234ENST00000642041 CADPSQ9ULU8 1353 aa31.63■■■□□ 2.65
PHGDH-234ENST00000642041 MROH2BQ7Z745 1585 aa31.46■■■□□ 2.63
PHGDH-234ENST00000642041 CEP164Q9UPV0 1460 aa31.35■■■□□ 2.61
PHGDH-234ENST00000642041 RIMBP3CA6NJZ7 1639 aa31.25■■■□□ 2.59
PHGDH-234ENST00000642041 RIMBP3BA6NNM3 1639 aa31.25■■■□□ 2.59
PHGDH-234ENST00000642041 RIMBP3Q9UFD9 1639 aa31.25■■■□□ 2.59
PHGDH-234ENST00000642041 FANCD2Q9BXW9 1451 aa31.23■■■□□ 2.59
PHGDH-234ENST00000642041 ARHGEF11O15085 1522 aa31.07■■■□□ 2.56
PHGDH-234ENST00000642041 URB2Q14146 1524 aaKnown RBP31.03■■■□□ 2.56
PHGDH-234ENST00000642041 CFTRP13569 1480 aa31.03■■■□□ 2.56
PHGDH-234ENST00000642041 WIZO95785 1651 aa31■■■□□ 2.55
PHGDH-234ENST00000642041 CYB5RLQ6IPT4 315 aa30.94■■■□□ 2.54
PHGDH-234ENST00000642041 TRHP20396 242 aaPredicted RBP30.91■■■□□ 2.54
PHGDH-234ENST00000642041 ZNF608Q9ULD9 1512 aaPredicted RBP30.82■■■□□ 2.52
PHGDH-234ENST00000642041 IFT140Q96RY7 1462 aa30.79■■■□□ 2.52
PHGDH-234ENST00000642041 AEBP2Q6ZN18 517 aaPredicted RBP30.78■■■□□ 2.52
PHGDH-234ENST00000642041 ARAP1Q96P48 1450 aa30.7■■■□□ 2.5
PHGDH-234ENST00000642041 RSF1Q96T23 1441 aaPredicted RBP30.56■■■□□ 2.48
PHGDH-234ENST00000642041 PRDM2Q13029 1718 aa30.56■■■□□ 2.48
PHGDH-234ENST00000642041 TOP2AP11388 1531 aaKnown RBP30.56■■■□□ 2.48
PHGDH-234ENST00000642041 EIF4G3O43432 1585 aaKnown RBP30.55■■■□□ 2.48
PHGDH-234ENST00000642041 TOPBP1Q92547 1522 aa30.52■■■□□ 2.48
PHGDH-234ENST00000642041 CHD1O14646 1710 aa30.51■■■□□ 2.47
PHGDH-234ENST00000642041 FBLN2P98095 1184 aa30.43■■■□□ 2.46
PHGDH-234ENST00000642041 ABCC8Q09428 1581 aa30.43■■■□□ 2.46
PHGDH-234ENST00000642041 AQRO60306 1485 aaKnown RBP eCLIP30.43■■■□□ 2.462e-7■□□□□ 9.8
PHGDH-234ENST00000642041 TARBP1Q13395 1621 aaKnown RBP30.32■■■□□ 2.44
PHGDH-234ENST00000642041 DNMBPQ6XZF7 1577 aa30.31■■■□□ 2.44
PHGDH-234ENST00000642041 CCDC88BA6NC98 1476 aa30.25■■■□□ 2.43
PHGDH-234ENST00000642041 CLASP1Q7Z460 1538 aa30.18■■■□□ 2.42
PHGDH-234ENST00000642041 POLA1P09884 1462 aaPredicted RBP30.14■■■□□ 2.42
PHGDH-234ENST00000642041 TDRD9Q8NDG6 1382 aaKnown RBP30.08■■■□□ 2.41
PHGDH-234ENST00000642041 SYNJ1O43426 1573 aa30.07■■■□□ 2.4
PHGDH-234ENST00000642041 CHMP7Q8WUX9 453 aaPredicted RBP30.07■■■□□ 2.4
PHGDH-234ENST00000642041 SNAPC4Q5SXM2 1469 aa30.06■■■□□ 2.4
PHGDH-234ENST00000642041 RAD54L2Q9Y4B4 1467 aa30.05■■■□□ 2.4
PHGDH-234ENST00000642041 SOGA1O94964 1423 aa30.02■■■□□ 2.4
PHGDH-234ENST00000642041 MAGI1Q96QZ7 1491 aaPredicted RBP29.97■■■□□ 2.39
PHGDH-234ENST00000642041 GAPVD1Q14C86 1478 aa29.96■■■□□ 2.39
PHGDH-234ENST00000642041 WDR97A6NE52 1622 aa29.96■■■□□ 2.39
PHGDH-234ENST00000642041 SYNJ2O15056 1496 aa29.87■■■□□ 2.37
PHGDH-234ENST00000642041 GRIN2BQ13224 1484 aa29.87■■■□□ 2.37
PHGDH-234ENST00000642041 SUPT5HO00267 1087 aaKnown RBP29.84■■■□□ 2.37
PHGDH-234ENST00000642041 FGD5Q6ZNL6 1462 aa29.8■■■□□ 2.36
PHGDH-234ENST00000642041 CUX1P39880 1505 aa29.61■■■□□ 2.33
PHGDH-234ENST00000642041 ERCC6L2Q5T890 1561 aa29.61■■■□□ 2.33
PHGDH-234ENST00000642041 PBRM1Q86U86 1689 aa29.6■■■□□ 2.33
PHGDH-234ENST00000642041 ILDR1Q86SU0 546 aaPredicted RBP29.57■■■□□ 2.32
PHGDH-234ENST00000642041 KIF13AQ9H1H9 1805 aa29.55■■■□□ 2.32
PHGDH-234ENST00000642041 CEP170Q5SW79 1584 aa29.49■■■□□ 2.31
PHGDH-234ENST00000642041 GRIN2AQ12879 1464 aa29.47■■■□□ 2.31
PHGDH-234ENST00000642041 ABCA5Q8WWZ7 1642 aa29.44■■■□□ 2.3
PHGDH-234ENST00000642041 ABCA10Q8WWZ4 1543 aa29.44■■■□□ 2.3
PHGDH-234ENST00000642041 NUP160Q12769 1436 aa29.43■■■□□ 2.3
PHGDH-234ENST00000642041 KDM4FA0A1W2PPD8 638 aa29.41■■■□□ 2.3
PHGDH-234ENST00000642041 SHROOM2Q13796 1616 aa29.38■■■□□ 2.29
PHGDH-234ENST00000642041 FAM69CQ0P6D2 419 aa29.34■■■□□ 2.29
PHGDH-234ENST00000642041 ABCC10Q5T3U5 1492 aa29.31■■■□□ 2.28
PHGDH-234ENST00000642041 ADAMTS12P58397 1594 aa29.29■■■□□ 2.28
PHGDH-234ENST00000642041 FHAD1B1AJZ9 1412 aa29.21■■■□□ 2.27
PHGDH-234ENST00000642041 PRG4Q92954 1404 aaPredicted RBP29.21■■■□□ 2.27
PHGDH-234ENST00000642041 NPM1P06748 294 aaKnown RBP eCLIP29.2■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 328.9 ms