RNA–Protein interactions for RNA: ENST00000641491.1

PHGDH-218, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 986 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-218ENST00000641491 NISCHQ9Y2I1 1504 aa30.09■■■□□ 2.41
PHGDH-218ENST00000641491 CCDC180Q9P1Z9 1646 aa26.54■■□□□ 1.84
PHGDH-218ENST00000641491 ABCC9O60706 1549 aa26.38■■□□□ 1.81
PHGDH-218ENST00000641491 DNAJC5BQ9UF47 199 aa25.35■■□□□ 1.65
PHGDH-218ENST00000641491 DCAF8L2P0C7V8 631 aa25.22■■□□□ 1.63
PHGDH-218ENST00000641491 ZCCHC6Q5VYS8 1495 aaKnown RBP25.17■■□□□ 1.62
PHGDH-218ENST00000641491 DCAF1Q9Y4B6 1507 aa24.91■■□□□ 1.58
PHGDH-218ENST00000641491 NACADO15069 1562 aa24.9■■□□□ 1.58
PHGDH-218ENST00000641491 RB1CC1Q8TDY2 1594 aa24.85■■□□□ 1.57
PHGDH-218ENST00000641491 MYO15BQ96JP2 1530 aa24.83■■□□□ 1.57
PHGDH-218ENST00000641491 PABPN1Q86U42 306 aaKnown RBP eCLIP24.52■■□□□ 1.52
PHGDH-218ENST00000641491 SCRIBQ14160 1630 aa24.33■■□□□ 1.49
PHGDH-218ENST00000641491 SHROOM4Q9ULL8 1493 aa24.22■■□□□ 1.47
PHGDH-218ENST00000641491 UNC13AQ9UPW8 1703 aa24.21■■□□□ 1.47
PHGDH-218ENST00000641491 BICRAQ9NZM4 1560 aa24.15■■□□□ 1.46
PHGDH-218ENST00000641491 CECR2Q9BXF3 1484 aa23.85■■□□□ 1.41
PHGDH-218ENST00000641491 CC2D2AQ9P2K1 1620 aa23.78■■□□□ 1.4
PHGDH-218ENST00000641491 DNAJC5Q9H3Z4 198 aa23.74■■□□□ 1.39
PHGDH-218ENST00000641491 EIF4G1Q04637 1599 aaKnown RBP23.61■■□□□ 1.37
PHGDH-218ENST00000641491 BAZ1AQ9NRL2 1556 aaPredicted RBP23.37■■□□□ 1.33
PHGDH-218ENST00000641491 SMARCA4P51532 1647 aa23.26■■□□□ 1.31
PHGDH-218ENST00000641491 MROH2BQ7Z745 1585 aa23.17■■□□□ 1.3
PHGDH-218ENST00000641491 RSF1Q96T23 1441 aaPredicted RBP23.1■■□□□ 1.29
PHGDH-218ENST00000641491 SMARCA2P51531 1590 aa23.1■■□□□ 1.29
PHGDH-218ENST00000641491 SUPT5HO00267 1087 aaKnown RBP23.08■■□□□ 1.29
PHGDH-218ENST00000641491 ATAD2BQ9ULI0 1458 aa23.02■■□□□ 1.28
PHGDH-218ENST00000641491 CUX2O14529 1486 aa23.01■■□□□ 1.27
PHGDH-218ENST00000641491 BAZ1BQ9UIG0 1483 aaKnown RBP22.97■■□□□ 1.27
PHGDH-218ENST00000641491 PEG3Q9GZU2 1588 aa22.96■■□□□ 1.27
PHGDH-218ENST00000641491 WIZO95785 1651 aa22.94■■□□□ 1.26
PHGDH-218ENST00000641491 NCAPD3P42695 1498 aa22.92■■□□□ 1.26
PHGDH-218ENST00000641491 HMGXB3Q12766 1538 aa22.88■■□□□ 1.25
PHGDH-218ENST00000641491 ERCC6Q03468 1493 aa22.83■■□□□ 1.25
PHGDH-218ENST00000641491 TOP2AP11388 1531 aaKnown RBP22.81■■□□□ 1.24
PHGDH-218ENST00000641491 CCDC88BA6NC98 1476 aa22.5■■□□□ 1.19
PHGDH-218ENST00000641491 NESP48681 1621 aa22.49■■□□□ 1.19
PHGDH-218ENST00000641491 TRIM41Q8WV44 630 aa22.38■■□□□ 1.17
PHGDH-218ENST00000641491 CADPSQ9ULU8 1353 aa22.35■■□□□ 1.17
PHGDH-218ENST00000641491 THOC2Q8NI27 1593 aaKnown RBP22.34■■□□□ 1.17
PHGDH-218ENST00000641491 LAMC3Q9Y6N6 1575 aa22.29■■□□□ 1.16
PHGDH-218ENST00000641491 CFTRP13569 1480 aa22.26■■□□□ 1.15
PHGDH-218ENST00000641491 PDS5BQ9NTI5 1447 aa22.23■■□□□ 1.15
PHGDH-218ENST00000641491 KIF21AQ7Z4S6 1674 aa22.12■■□□□ 1.13
PHGDH-218ENST00000641491 FANCD2Q9BXW9 1451 aa22.1■■□□□ 1.13
PHGDH-218ENST00000641491 PRDM2Q13029 1718 aa22.08■■□□□ 1.12
PHGDH-218ENST00000641491 CEP164Q9UPV0 1460 aa22.08■■□□□ 1.12
PHGDH-218ENST00000641491 MRC2Q9UBG0 1479 aa21.99■■□□□ 1.11
PHGDH-218ENST00000641491 OSCARQ8IYS5 282 aa21.95■■□□□ 1.1
PHGDH-218ENST00000641491 WDR62O43379 1518 aa21.95■■□□□ 1.1
PHGDH-218ENST00000641491 WRNQ14191 1432 aaPredicted RBP eCLIP21.88■■□□□ 1.09
PHGDH-218ENST00000641491 ABCC8Q09428 1581 aa21.87■■□□□ 1.09
PHGDH-218ENST00000641491 DNMBPQ6XZF7 1577 aa21.8■■□□□ 1.08
PHGDH-218ENST00000641491 URB2Q14146 1524 aaKnown RBP21.76■■□□□ 1.07
PHGDH-218ENST00000641491 TOPBP1Q92547 1522 aa21.75■■□□□ 1.07
PHGDH-218ENST00000641491 CUX1P39880 1505 aa21.73■■□□□ 1.07
PHGDH-218ENST00000641491 TOP2BQ02880 1626 aa21.69■■□□□ 1.06
PHGDH-218ENST00000641491 CHIC1Q5VXU3 224 aa21.68■■□□□ 1.06
PHGDH-218ENST00000641491 SYNJ1O43426 1573 aa21.68■■□□□ 1.06
PHGDH-218ENST00000641491 BIVM-ERCC5R4GMW8 1640 aa21.66■■□□□ 1.06
PHGDH-218ENST00000641491 FGD5Q6ZNL6 1462 aa21.64■■□□□ 1.06
PHGDH-218ENST00000641491 POLA1P09884 1462 aaPredicted RBP21.6■■□□□ 1.05
PHGDH-218ENST00000641491 RIMBP3CA6NJZ7 1639 aa21.59■■□□□ 1.05
PHGDH-218ENST00000641491 RIMBP3BA6NNM3 1639 aa21.59■■□□□ 1.05
PHGDH-218ENST00000641491 RIMBP3Q9UFD9 1639 aa21.59■■□□□ 1.05
PHGDH-218ENST00000641491 SOGA1O94964 1423 aa21.59■■□□□ 1.05
PHGDH-218ENST00000641491 IFT140Q96RY7 1462 aa21.58■■□□□ 1.04
PHGDH-218ENST00000641491 RAD54L2Q9Y4B4 1467 aa21.5■■□□□ 1.03
PHGDH-218ENST00000641491 ARHGEF11O15085 1522 aa21.49■■□□□ 1.03
PHGDH-218ENST00000641491 ABCA10Q8WWZ4 1543 aa21.45■■□□□ 1.02
PHGDH-218ENST00000641491 CYB5RLQ6IPT4 315 aa21.44■■□□□ 1.02
PHGDH-218ENST00000641491 KIF27Q86VH2 1401 aa21.44■■□□□ 1.02
PHGDH-218ENST00000641491 ZNF608Q9ULD9 1512 aaPredicted RBP21.4■■□□□ 1.02
PHGDH-218ENST00000641491 TARBP1Q13395 1621 aaKnown RBP21.4■■□□□ 1.02
PHGDH-218ENST00000641491 TDRD9Q8NDG6 1382 aaKnown RBP21.38■■□□□ 1.01
PHGDH-218ENST00000641491 WDR97A6NE52 1622 aa21.38■■□□□ 1.01
PHGDH-218ENST00000641491 TRHP20396 242 aaPredicted RBP21.37■■□□□ 1.01
PHGDH-218ENST00000641491 EEA1Q15075 1411 aa21.36■■□□□ 1.01
PHGDH-218ENST00000641491 GAPVD1Q14C86 1478 aa21.34■■□□□ 1.01
PHGDH-218ENST00000641491 FAM9AQ8IZU1 332 aaPredicted RBP21.33■■□□□ 1.01
PHGDH-218ENST00000641491 AQRO60306 1485 aaKnown RBP eCLIP21.32■■□□□ 12e-7■□□□□ 9.8
PHGDH-218ENST00000641491 EIF4G3O43432 1585 aaKnown RBP21.31■■□□□ 1
PHGDH-218ENST00000641491 GRIN2BQ13224 1484 aa21.29■■□□□ 1
PHGDH-218ENST00000641491 ABCA5Q8WWZ7 1642 aa21.26■□□□□ 0.99
PHGDH-218ENST00000641491 ARAP1Q96P48 1450 aa21.24■□□□□ 0.99
PHGDH-218ENST00000641491 ERICH3Q5RHP9 1530 aa21.22■□□□□ 0.99
PHGDH-218ENST00000641491 CSRNP3Q8WYN3 585 aa21.21■□□□□ 0.99
PHGDH-218ENST00000641491 PBRM1Q86U86 1689 aa21.19■□□□□ 0.98
PHGDH-218ENST00000641491 AEBP2Q6ZN18 517 aaPredicted RBP21.19■□□□□ 0.98
PHGDH-218ENST00000641491 SNAPC4Q5SXM2 1469 aa21.19■□□□□ 0.98
PHGDH-218ENST00000641491 RUSC2Q8N2Y8 1516 aa21.18■□□□□ 0.98
PHGDH-218ENST00000641491 FBLN2P98095 1184 aa21.17■□□□□ 0.98
PHGDH-218ENST00000641491 MAGI1Q96QZ7 1491 aaPredicted RBP21.17■□□□□ 0.98
PHGDH-218ENST00000641491 IGF1RP08069 1367 aa21.15■□□□□ 0.98
PHGDH-218ENST00000641491 CHMP7Q8WUX9 453 aaPredicted RBP21.15■□□□□ 0.98
PHGDH-218ENST00000641491 CUL7Q14999 1698 aa21.14■□□□□ 0.97
PHGDH-218ENST00000641491 CARMIL1Q5VZK9 1371 aa21.13■□□□□ 0.97
PHGDH-218ENST00000641491 FHAD1B1AJZ9 1412 aa21.12■□□□□ 0.97
PHGDH-218ENST00000641491 CHD1O14646 1710 aa21.12■□□□□ 0.97
PHGDH-218ENST00000641491 SYNJ2O15056 1496 aa21.08■□□□□ 0.97
PHGDH-218ENST00000641491 ADAMTS12P58397 1594 aa21.08■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms