RNA–Protein interactions for RNA: ENST00000641455.1

PHGDH-217, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 312 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-217ENST00000641455 NISCHQ9Y2I1 1504 aa20.15■□□□□ 0.82
PHGDH-217ENST00000641455 ABCC9O60706 1549 aa18.79■□□□□ 0.6
PHGDH-217ENST00000641455 CCDC180Q9P1Z9 1646 aa18.29■□□□□ 0.52
PHGDH-217ENST00000641455 DNAJC5BQ9UF47 199 aa17.96■□□□□ 0.47
PHGDH-217ENST00000641455 RB1CC1Q8TDY2 1594 aa17.65■□□□□ 0.42
PHGDH-217ENST00000641455 PABPN1Q86U42 306 aaKnown RBP eCLIP17.42■□□□□ 0.38
PHGDH-217ENST00000641455 NACADO15069 1562 aa17.39■□□□□ 0.37
PHGDH-217ENST00000641455 DCAF8L2P0C7V8 631 aa17.33■□□□□ 0.36
PHGDH-217ENST00000641455 UNC13AQ9UPW8 1703 aa17.24■□□□□ 0.35
PHGDH-217ENST00000641455 BICRAQ9NZM4 1560 aa17.11■□□□□ 0.33
PHGDH-217ENST00000641455 CECR2Q9BXF3 1484 aa16.95■□□□□ 0.3
PHGDH-217ENST00000641455 MYO15BQ96JP2 1530 aa16.95■□□□□ 0.3
PHGDH-217ENST00000641455 CC2D2AQ9P2K1 1620 aa16.92■□□□□ 0.3
PHGDH-217ENST00000641455 DNAJC5Q9H3Z4 198 aa16.83■□□□□ 0.28
PHGDH-217ENST00000641455 SHROOM4Q9ULL8 1493 aa16.82■□□□□ 0.28
PHGDH-217ENST00000641455 EIF4G1Q04637 1599 aaKnown RBP16.76■□□□□ 0.27
PHGDH-217ENST00000641455 SCRIBQ14160 1630 aa16.7■□□□□ 0.26
PHGDH-217ENST00000641455 ZCCHC6Q5VYS8 1495 aaKnown RBP16.61■□□□□ 0.25
PHGDH-217ENST00000641455 DCAF1Q9Y4B6 1507 aa16.57■□□□□ 0.24
PHGDH-217ENST00000641455 CUX2O14529 1486 aa16.34■□□□□ 0.21
PHGDH-217ENST00000641455 ERCC6Q03468 1493 aa16.29■□□□□ 0.2
PHGDH-217ENST00000641455 NCAPD3P42695 1498 aa16.03■□□□□ 0.16
PHGDH-217ENST00000641455 TRIM41Q8WV44 630 aa16.02■□□□□ 0.16
PHGDH-217ENST00000641455 NESP48681 1621 aa15.99■□□□□ 0.15
PHGDH-217ENST00000641455 ATAD2BQ9ULI0 1458 aa15.95■□□□□ 0.14
PHGDH-217ENST00000641455 HMGXB3Q12766 1538 aa15.9■□□□□ 0.14
PHGDH-217ENST00000641455 SMARCA2P51531 1590 aa15.9■□□□□ 0.14
PHGDH-217ENST00000641455 THOC2Q8NI27 1593 aaKnown RBP15.9■□□□□ 0.14
PHGDH-217ENST00000641455 SMARCA4P51532 1647 aa15.83■□□□□ 0.13
PHGDH-217ENST00000641455 BAZ1BQ9UIG0 1483 aaKnown RBP15.82■□□□□ 0.12
PHGDH-217ENST00000641455 LAMC3Q9Y6N6 1575 aa15.79■□□□□ 0.12
PHGDH-217ENST00000641455 KIF21AQ7Z4S6 1674 aa15.77■□□□□ 0.12
PHGDH-217ENST00000641455 PDS5BQ9NTI5 1447 aa15.73■□□□□ 0.11
PHGDH-217ENST00000641455 BAZ1AQ9NRL2 1556 aaPredicted RBP15.69■□□□□ 0.1
PHGDH-217ENST00000641455 PEG3Q9GZU2 1588 aa15.63■□□□□ 0.09
PHGDH-217ENST00000641455 MRC2Q9UBG0 1479 aa15.63■□□□□ 0.09
PHGDH-217ENST00000641455 WDR62O43379 1518 aa15.58■□□□□ 0.08
PHGDH-217ENST00000641455 CADPSQ9ULU8 1353 aa15.56■□□□□ 0.08
PHGDH-217ENST00000641455 OSCARQ8IYS5 282 aa15.54■□□□□ 0.08
PHGDH-217ENST00000641455 MROH2BQ7Z745 1585 aa15.53■□□□□ 0.08
PHGDH-217ENST00000641455 CEP164Q9UPV0 1460 aa15.48■□□□□ 0.07
PHGDH-217ENST00000641455 FANCD2Q9BXW9 1451 aa15.41■□□□□ 0.06
PHGDH-217ENST00000641455 RIMBP3CA6NJZ7 1639 aa15.39■□□□□ 0.05
PHGDH-217ENST00000641455 RIMBP3BA6NNM3 1639 aa15.39■□□□□ 0.05
PHGDH-217ENST00000641455 RIMBP3Q9UFD9 1639 aa15.39■□□□□ 0.05
PHGDH-217ENST00000641455 WIZO95785 1651 aa15.35■□□□□ 0.05
PHGDH-217ENST00000641455 URB2Q14146 1524 aaKnown RBP15.29■□□□□ 0.04
PHGDH-217ENST00000641455 ARHGEF11O15085 1522 aa15.28■□□□□ 0.04
PHGDH-217ENST00000641455 CFTRP13569 1480 aa15.27■□□□□ 0.03
PHGDH-217ENST00000641455 TRHP20396 242 aaPredicted RBP15.26■□□□□ 0.03
PHGDH-217ENST00000641455 CYB5RLQ6IPT4 315 aa15.23■□□□□ 0.03
PHGDH-217ENST00000641455 ZNF608Q9ULD9 1512 aaPredicted RBP15.19■□□□□ 0.02
PHGDH-217ENST00000641455 IFT140Q96RY7 1462 aa15.17■□□□□ 0.02
PHGDH-217ENST00000641455 AEBP2Q6ZN18 517 aaPredicted RBP15.17■□□□□ 0.02
PHGDH-217ENST00000641455 PRDM2Q13029 1718 aa15.12■□□□□ 0.01
PHGDH-217ENST00000641455 ARAP1Q96P48 1450 aa15.11■□□□□ 0.01
PHGDH-217ENST00000641455 TOP2AP11388 1531 aaKnown RBP15.11■□□□□ 0.01
PHGDH-217ENST00000641455 EIF4G3O43432 1585 aaKnown RBP15.1■□□□□ 0.01
PHGDH-217ENST00000641455 CHD1O14646 1710 aa15.09■□□□□ 0.01
PHGDH-217ENST00000641455 FBLN2P98095 1184 aa15.07■□□□□ 0
PHGDH-217ENST00000641455 TOPBP1Q92547 1522 aa15.06■□□□□ 0
PHGDH-217ENST00000641455 RSF1Q96T23 1441 aaPredicted RBP15.03■□□□□ -0
PHGDH-217ENST00000641455 AQRO60306 1485 aaKnown RBP eCLIP15.01□□□□□ -0.01
PHGDH-217ENST00000641455 ABCC8Q09428 1581 aa14.98□□□□□ -0.01
PHGDH-217ENST00000641455 DNMBPQ6XZF7 1577 aa14.97□□□□□ -0.01
PHGDH-217ENST00000641455 CCDC88BA6NC98 1476 aa14.94□□□□□ -0.02
PHGDH-217ENST00000641455 TARBP1Q13395 1621 aaKnown RBP14.93□□□□□ -0.02
PHGDH-217ENST00000641455 POLA1P09884 1462 aaPredicted RBP14.87□□□□□ -0.03
PHGDH-217ENST00000641455 SNAPC4Q5SXM2 1469 aa14.86□□□□□ -0.03
PHGDH-217ENST00000641455 CLASP1Q7Z460 1538 aa14.86□□□□□ -0.03
PHGDH-217ENST00000641455 CHMP7Q8WUX9 453 aaPredicted RBP14.85□□□□□ -0.03
PHGDH-217ENST00000641455 SYNJ1O43426 1573 aa14.85□□□□□ -0.03
PHGDH-217ENST00000641455 TDRD9Q8NDG6 1382 aaKnown RBP14.85□□□□□ -0.03
PHGDH-217ENST00000641455 RAD54L2Q9Y4B4 1467 aa14.84□□□□□ -0.03
PHGDH-217ENST00000641455 SOGA1O94964 1423 aa14.81□□□□□ -0.04
PHGDH-217ENST00000641455 GAPVD1Q14C86 1478 aa14.76□□□□□ -0.05
PHGDH-217ENST00000641455 MAGI1Q96QZ7 1491 aaPredicted RBP14.76□□□□□ -0.05
PHGDH-217ENST00000641455 WDR97A6NE52 1622 aa14.74□□□□□ -0.05
PHGDH-217ENST00000641455 SYNJ2O15056 1496 aa14.73□□□□□ -0.05
PHGDH-217ENST00000641455 GRIN2BQ13224 1484 aa14.73□□□□□ -0.05
PHGDH-217ENST00000641455 FGD5Q6ZNL6 1462 aa14.73□□□□□ -0.05
PHGDH-217ENST00000641455 PBRM1Q86U86 1689 aa14.66□□□□□ -0.06
PHGDH-217ENST00000641455 CUX1P39880 1505 aa14.62□□□□□ -0.07
PHGDH-217ENST00000641455 ERCC6L2Q5T890 1561 aa14.61□□□□□ -0.07
PHGDH-217ENST00000641455 CEP170Q5SW79 1584 aa14.56□□□□□ -0.08
PHGDH-217ENST00000641455 KIF13AQ9H1H9 1805 aa14.55□□□□□ -0.08
PHGDH-217ENST00000641455 ABCA5Q8WWZ7 1642 aa14.53□□□□□ -0.08
PHGDH-217ENST00000641455 GRIN2AQ12879 1464 aa14.53□□□□□ -0.08
PHGDH-217ENST00000641455 ABCA10Q8WWZ4 1543 aa14.51□□□□□ -0.09
PHGDH-217ENST00000641455 ILDR1Q86SU0 546 aaPredicted RBP14.5□□□□□ -0.09
PHGDH-217ENST00000641455 ADAMTS12P58397 1594 aa14.48□□□□□ -0.09
PHGDH-217ENST00000641455 NUP160Q12769 1436 aa14.48□□□□□ -0.09
PHGDH-217ENST00000641455 FAM69CQ0P6D2 419 aa14.47□□□□□ -0.09
PHGDH-217ENST00000641455 SHROOM2Q13796 1616 aa14.46□□□□□ -0.09
PHGDH-217ENST00000641455 KDM4FA0A1W2PPD8 638 aa14.42□□□□□ -0.1
PHGDH-217ENST00000641455 NPM1P06748 294 aaKnown RBP eCLIP14.42□□□□□ -0.1
PHGDH-217ENST00000641455 FHAD1B1AJZ9 1412 aa14.41□□□□□ -0.1
PHGDH-217ENST00000641455 PRG4Q92954 1404 aaPredicted RBP14.41□□□□□ -0.1
PHGDH-217ENST00000641455 KDM6BO15054 1643 aa14.41□□□□□ -0.1
PHGDH-217ENST00000641455 ABCC10Q5T3U5 1492 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms