RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 NISCHQ9Y2I1 1504 aa22.18■■□□□ 1.14
PDLIM5-223ENST00000627587 AEBP2Q6ZN18 517 aaPredicted RBP20.99■□□□□ 0.95
PDLIM5-223ENST00000627587 ABCC9O60706 1549 aa20.02■□□□□ 0.8
PDLIM5-223ENST00000627587 CCDC180Q9P1Z9 1646 aa19.97■□□□□ 0.79
PDLIM5-223ENST00000627587 CHIC1Q5VXU3 224 aa19.67■□□□□ 0.74
PDLIM5-223ENST00000627587 RB1CC1Q8TDY2 1594 aa19.08■□□□□ 0.64
PDLIM5-223ENST00000627587 NACADO15069 1562 aa18.94■□□□□ 0.62
PDLIM5-223ENST00000627587 DNAJC5BQ9UF47 199 aa18.88■□□□□ 0.61
PDLIM5-223ENST00000627587 DCAF8L2P0C7V8 631 aa18.78■□□□□ 0.6
PDLIM5-223ENST00000627587 MYO15BQ96JP2 1530 aa18.66■□□□□ 0.58
PDLIM5-223ENST00000627587 PABPN1Q86U42 306 aaKnown RBP eCLIP18.63■□□□□ 0.57
PDLIM5-223ENST00000627587 UNC13AQ9UPW8 1703 aa18.55■□□□□ 0.56
PDLIM5-223ENST00000627587 BICRAQ9NZM4 1560 aa18.46■□□□□ 0.55
PDLIM5-223ENST00000627587 DCAF1Q9Y4B6 1507 aa18.37■□□□□ 0.53
PDLIM5-223ENST00000627587 ZCCHC6Q5VYS8 1495 aaKnown RBP18.33■□□□□ 0.52
PDLIM5-223ENST00000627587 SHROOM4Q9ULL8 1493 aa18.32■□□□□ 0.52
PDLIM5-223ENST00000627587 SCRIBQ14160 1630 aa18.1■□□□□ 0.49
PDLIM5-223ENST00000627587 CC2D2AQ9P2K1 1620 aa18.09■□□□□ 0.49
PDLIM5-223ENST00000627587 CECR2Q9BXF3 1484 aa18.09■□□□□ 0.49
PDLIM5-223ENST00000627587 EIF4G1Q04637 1599 aaKnown RBP18.03■□□□□ 0.48
PDLIM5-223ENST00000627587 SENP3Q9H4L4 574 aaPredicted RBP17.92■□□□□ 0.46
PDLIM5-223ENST00000627587 PHF23Q9BUL5 403 aaPredicted RBP17.66■□□□□ 0.42
PDLIM5-223ENST00000627587 DNAJC5Q9H3Z4 198 aa17.53■□□□□ 0.4
PDLIM5-223ENST00000627587 NCAPD3P42695 1498 aa17.49■□□□□ 0.39
PDLIM5-223ENST00000627587 CUX2O14529 1486 aa17.39■□□□□ 0.37
PDLIM5-223ENST00000627587 ATAD2BQ9ULI0 1458 aa17.37■□□□□ 0.37
PDLIM5-223ENST00000627587 SMARCA2P51531 1590 aa17.35■□□□□ 0.37
PDLIM5-223ENST00000627587 ERCC6Q03468 1493 aa17.34■□□□□ 0.37
PDLIM5-223ENST00000627587 HMGXB3Q12766 1538 aa17.31■□□□□ 0.36
PDLIM5-223ENST00000627587 SMARCA4P51532 1647 aa17.3■□□□□ 0.36
PDLIM5-223ENST00000627587 BAZ1AQ9NRL2 1556 aaPredicted RBP17.24■□□□□ 0.35
PDLIM5-223ENST00000627587 BAZ1BQ9UIG0 1483 aaKnown RBP17.2■□□□□ 0.34
PDLIM5-223ENST00000627587 PEG3Q9GZU2 1588 aa17.17■□□□□ 0.34
PDLIM5-223ENST00000627587 NESP48681 1621 aa17.14■□□□□ 0.33
PDLIM5-223ENST00000627587 LAMC3Q9Y6N6 1575 aa17.09■□□□□ 0.33
PDLIM5-223ENST00000627587 MROH2BQ7Z745 1585 aa17.04■□□□□ 0.32
PDLIM5-223ENST00000627587 PDS5BQ9NTI5 1447 aa17.03■□□□□ 0.32
PDLIM5-223ENST00000627587 THOC2Q8NI27 1593 aaKnown RBP17■□□□□ 0.31
PDLIM5-223ENST00000627587 CADPSQ9ULU8 1353 aa16.94■□□□□ 0.3
PDLIM5-223ENST00000627587 SUPT5HO00267 1087 aaKnown RBP16.93■□□□□ 0.3
PDLIM5-223ENST00000627587 KIF21AQ7Z4S6 1674 aa16.92■□□□□ 0.3
PDLIM5-223ENST00000627587 RSF1Q96T23 1441 aaPredicted RBP16.87■□□□□ 0.29
PDLIM5-223ENST00000627587 MRC2Q9UBG0 1479 aa16.84■□□□□ 0.29
PDLIM5-223ENST00000627587 WIZO95785 1651 aa16.81■□□□□ 0.28
PDLIM5-223ENST00000627587 WDR62O43379 1518 aa16.79■□□□□ 0.28
PDLIM5-223ENST00000627587 FOXD1Q16676 465 aa16.76■□□□□ 0.27
PDLIM5-223ENST00000627587 CEP164Q9UPV0 1460 aa16.75■□□□□ 0.27
PDLIM5-223ENST00000627587 FANCD2Q9BXW9 1451 aa16.71■□□□□ 0.27
PDLIM5-223ENST00000627587 CFTRP13569 1480 aa16.71■□□□□ 0.26
PDLIM5-223ENST00000627587 TRIM41Q8WV44 630 aa16.65■□□□□ 0.26
PDLIM5-223ENST00000627587 TOP2AP11388 1531 aaKnown RBP16.64■□□□□ 0.25
PDLIM5-223ENST00000627587 OSCARQ8IYS5 282 aa16.61■□□□□ 0.25
PDLIM5-223ENST00000627587 URB2Q14146 1524 aaKnown RBP16.55■□□□□ 0.24
PDLIM5-223ENST00000627587 PRDM2Q13029 1718 aa16.5■□□□□ 0.23
PDLIM5-223ENST00000627587 CCDC88BA6NC98 1476 aa16.45■□□□□ 0.22
PDLIM5-223ENST00000627587 IFT140Q96RY7 1462 aa16.45■□□□□ 0.22
PDLIM5-223ENST00000627587 ABCC8Q09428 1581 aa16.44■□□□□ 0.22
PDLIM5-223ENST00000627587 TOPBP1Q92547 1522 aa16.37■□□□□ 0.21
PDLIM5-223ENST00000627587 ZNF608Q9ULD9 1512 aaPredicted RBP16.35■□□□□ 0.21
PDLIM5-223ENST00000627587 DNMBPQ6XZF7 1577 aa16.31■□□□□ 0.2
PDLIM5-223ENST00000627587 RIMBP3CA6NJZ7 1639 aa16.3■□□□□ 0.2
PDLIM5-223ENST00000627587 RIMBP3BA6NNM3 1639 aa16.3■□□□□ 0.2
PDLIM5-223ENST00000627587 RIMBP3Q9UFD9 1639 aa16.3■□□□□ 0.2
PDLIM5-223ENST00000627587 EIF4G3O43432 1585 aaKnown RBP16.25■□□□□ 0.19
PDLIM5-223ENST00000627587 ARHGEF11O15085 1522 aa16.24■□□□□ 0.19
PDLIM5-223ENST00000627587 TARBP1Q13395 1621 aaKnown RBP16.22■□□□□ 0.19
PDLIM5-223ENST00000627587 AQRO60306 1485 aaKnown RBP eCLIP16.21■□□□□ 0.19
PDLIM5-223ENST00000627587 POLA1P09884 1462 aaPredicted RBP16.19■□□□□ 0.18
PDLIM5-223ENST00000627587 CYB5RLQ6IPT4 315 aa16.18■□□□□ 0.18
PDLIM5-223ENST00000627587 FBLN2P98095 1184 aa16.16■□□□□ 0.18
PDLIM5-223ENST00000627587 SOGA1O94964 1423 aa16.16■□□□□ 0.18
PDLIM5-223ENST00000627587 CHD1O14646 1710 aa16.15■□□□□ 0.18
PDLIM5-223ENST00000627587 WDR97A6NE52 1622 aa16.14■□□□□ 0.17
PDLIM5-223ENST00000627587 RAD54L2Q9Y4B4 1467 aa16.11■□□□□ 0.17
PDLIM5-223ENST00000627587 TDRD9Q8NDG6 1382 aaKnown RBP16.1■□□□□ 0.17
PDLIM5-223ENST00000627587 CHMP7Q8WUX9 453 aaPredicted RBP16.08■□□□□ 0.16
PDLIM5-223ENST00000627587 FGD5Q6ZNL6 1462 aa16.06■□□□□ 0.16
PDLIM5-223ENST00000627587 ARAP1Q96P48 1450 aa16.06■□□□□ 0.16
PDLIM5-223ENST00000627587 TRHP20396 242 aaPredicted RBP16.05■□□□□ 0.16
PDLIM5-223ENST00000627587 MAGI1Q96QZ7 1491 aaPredicted RBP16.05■□□□□ 0.16
PDLIM5-223ENST00000627587 GRIN2BQ13224 1484 aa16.04■□□□□ 0.16
PDLIM5-223ENST00000627587 SNAPC4Q5SXM2 1469 aa16.04■□□□□ 0.16
PDLIM5-223ENST00000627587 SYNJ1O43426 1573 aa16.02■□□□□ 0.15
PDLIM5-223ENST00000627587 CUX1P39880 1505 aa16.02■□□□□ 0.15
PDLIM5-223ENST00000627587 CLASP1Q7Z460 1538 aa16■□□□□ 0.15
PDLIM5-223ENST00000627587 SYNJ2O15056 1496 aa15.98■□□□□ 0.15
PDLIM5-223ENST00000627587 GAPVD1Q14C86 1478 aa15.95■□□□□ 0.14
PDLIM5-223ENST00000627587 ABCA10Q8WWZ4 1543 aa15.91■□□□□ 0.14
PDLIM5-223ENST00000627587 PBRM1Q86U86 1689 aa15.9■□□□□ 0.14
PDLIM5-223ENST00000627587 POTEDQ86YR6 584 aa15.86■□□□□ 0.13
PDLIM5-223ENST00000627587 ABCA5Q8WWZ7 1642 aa15.86■□□□□ 0.13
PDLIM5-223ENST00000627587 WRNQ14191 1432 aaPredicted RBP eCLIP15.85■□□□□ 0.13
PDLIM5-223ENST00000627587 GRIN2AQ12879 1464 aa15.8■□□□□ 0.12
PDLIM5-223ENST00000627587 BIVM-ERCC5R4GMW8 1640 aa15.78■□□□□ 0.12
PDLIM5-223ENST00000627587 MSH5O43196 834 aa15.77■□□□□ 0.11
PDLIM5-223ENST00000627587 TOP2BQ02880 1626 aa15.77■□□□□ 0.11
PDLIM5-223ENST00000627587 FHAD1B1AJZ9 1412 aa15.76■□□□□ 0.11
PDLIM5-223ENST00000627587 NUP160Q12769 1436 aa15.76■□□□□ 0.11
PDLIM5-223ENST00000627587 ADAMTS12P58397 1594 aa15.74■□□□□ 0.11
PDLIM5-223ENST00000627587 ERICH3Q5RHP9 1530 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms