RNA–Protein interactions for RNA: ENST00000607187.1

CTSA-215, Transcript of cathepsin A, humanhuman

TSL 2

Gene CTSA, Length 509 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-215ENST00000607187 NISCHQ9Y2I1 1504 aa24.45■■□□□ 1.51
CTSA-215ENST00000607187 CHIC1Q5VXU3 224 aa23.31■■□□□ 1.32
CTSA-215ENST00000607187 AEBP2Q6ZN18 517 aaPredicted RBP22.88■■□□□ 1.25
CTSA-215ENST00000607187 CCDC180Q9P1Z9 1646 aa21.82■■□□□ 1.08
CTSA-215ENST00000607187 ABCC9O60706 1549 aa21.39■■□□□ 1.02
CTSA-215ENST00000607187 PHF23Q9BUL5 403 aaPredicted RBP20.64■□□□□ 0.89
CTSA-215ENST00000607187 RB1CC1Q8TDY2 1594 aa20.56■□□□□ 0.88
CTSA-215ENST00000607187 NACADO15069 1562 aa20.52■□□□□ 0.88
CTSA-215ENST00000607187 DCAF8L2P0C7V8 631 aa20.42■□□□□ 0.86
CTSA-215ENST00000607187 MYO15BQ96JP2 1530 aa20.37■□□□□ 0.85
CTSA-215ENST00000607187 ZCCHC6Q5VYS8 1495 aaKnown RBP20.36■□□□□ 0.85
CTSA-215ENST00000607187 DCAF1Q9Y4B6 1507 aa20.25■□□□□ 0.83
CTSA-215ENST00000607187 UNC13AQ9UPW8 1703 aa20.16■□□□□ 0.82
CTSA-215ENST00000607187 BICRAQ9NZM4 1560 aa19.96■□□□□ 0.79
CTSA-215ENST00000607187 PABPN1Q86U42 306 aaKnown RBP eCLIP19.96■□□□□ 0.792e-8■□□□□ 9.3
CTSA-215ENST00000607187 SCRIBQ14160 1630 aa19.86■□□□□ 0.77
CTSA-215ENST00000607187 DNAJC5BQ9UF47 199 aa19.75■□□□□ 0.75
CTSA-215ENST00000607187 SHROOM4Q9ULL8 1493 aa19.73■□□□□ 0.75
CTSA-215ENST00000607187 EIF4G1Q04637 1599 aaKnown RBP19.43■□□□□ 0.7
CTSA-215ENST00000607187 CC2D2AQ9P2K1 1620 aa19.38■□□□□ 0.69
CTSA-215ENST00000607187 PLPPR3Q6T4P5 718 aa19.36■□□□□ 0.69
CTSA-215ENST00000607187 CECR2Q9BXF3 1484 aa19.24■□□□□ 0.67
CTSA-215ENST00000607187 SENP3Q9H4L4 574 aaPredicted RBP19.19■□□□□ 0.66
CTSA-215ENST00000607187 SMARCA4P51532 1647 aa19.01■□□□□ 0.63
CTSA-215ENST00000607187 BAZ1AQ9NRL2 1556 aaPredicted RBP18.96■□□□□ 0.63
CTSA-215ENST00000607187 NCAPD3P42695 1498 aa18.93■□□□□ 0.62
CTSA-215ENST00000607187 ATAD2BQ9ULI0 1458 aa18.92■□□□□ 0.62
CTSA-215ENST00000607187 SMARCA2P51531 1590 aa18.89■□□□□ 0.62
CTSA-215ENST00000607187 MROH2BQ7Z745 1585 aa18.85■□□□□ 0.61
CTSA-215ENST00000607187 PEG3Q9GZU2 1588 aa18.84■□□□□ 0.61
CTSA-215ENST00000607187 HMGXB3Q12766 1538 aa18.83■□□□□ 0.6
CTSA-215ENST00000607187 BAZ1BQ9UIG0 1483 aaKnown RBP18.75■□□□□ 0.59
CTSA-215ENST00000607187 WIZO95785 1651 aa18.65■□□□□ 0.58
CTSA-215ENST00000607187 RSF1Q96T23 1441 aaPredicted RBP18.58■□□□□ 0.57
CTSA-215ENST00000607187 NESP48681 1621 aa18.49■□□□□ 0.55
CTSA-215ENST00000607187 LAMC3Q9Y6N6 1575 aa18.45■□□□□ 0.54
CTSA-215ENST00000607187 ERCC6Q03468 1493 aa18.44■□□□□ 0.54
CTSA-215ENST00000607187 TOP2AP11388 1531 aaKnown RBP18.43■□□□□ 0.54
CTSA-215ENST00000607187 CADPSQ9ULU8 1353 aa18.36■□□□□ 0.53
CTSA-215ENST00000607187 CUX2O14529 1486 aa18.31■□□□□ 0.52
CTSA-215ENST00000607187 KIF21AQ7Z4S6 1674 aa18.31■□□□□ 0.52
CTSA-215ENST00000607187 PDS5BQ9NTI5 1447 aa18.31■□□□□ 0.52
CTSA-215ENST00000607187 THOC2Q8NI27 1593 aaKnown RBP18.26■□□□□ 0.51
CTSA-215ENST00000607187 CFTRP13569 1480 aa18.24■□□□□ 0.51
CTSA-215ENST00000607187 CCDC88BA6NC98 1476 aa18.21■□□□□ 0.51
CTSA-215ENST00000607187 PRDM2Q13029 1718 aa18.16■□□□□ 0.5
CTSA-215ENST00000607187 ADRA2BP18089 450 aa18.16■□□□□ 0.5
CTSA-215ENST00000607187 FANCD2Q9BXW9 1451 aa18.14■□□□□ 0.5
CTSA-215ENST00000607187 CEP164Q9UPV0 1460 aa18.14■□□□□ 0.49
CTSA-215ENST00000607187 MRC2Q9UBG0 1479 aa18.13■□□□□ 0.49
CTSA-215ENST00000607187 WDR62O43379 1518 aa18.09■□□□□ 0.49
CTSA-215ENST00000607187 EHMT2Q96KQ7 1210 aa18.02■□□□□ 0.48
CTSA-215ENST00000607187 SUPT5HO00267 1087 aaKnown RBP18■□□□□ 0.47
CTSA-215ENST00000607187 KCNA4P22459 653 aa18■□□□□ 0.47
CTSA-215ENST00000607187 URB2Q14146 1524 aaKnown RBP17.98■□□□□ 0.47
CTSA-215ENST00000607187 PPP6R1Q9UPN7 881 aa17.88■□□□□ 0.45
CTSA-215ENST00000607187 DNAJC5Q9H3Z4 198 aa17.86■□□□□ 0.45
CTSA-215ENST00000607187 TOPBP1Q92547 1522 aa17.86■□□□□ 0.45
CTSA-215ENST00000607187 ABCC8Q09428 1581 aa17.85■□□□□ 0.45
CTSA-215ENST00000607187 DNMBPQ6XZF7 1577 aa17.83■□□□□ 0.44
CTSA-215ENST00000607187 IFT140Q96RY7 1462 aa17.75■□□□□ 0.43
CTSA-215ENST00000607187 FOXD1Q16676 465 aa17.73■□□□□ 0.43
CTSA-215ENST00000607187 POLA1P09884 1462 aaPredicted RBP17.69■□□□□ 0.42
CTSA-215ENST00000607187 TARBP1Q13395 1621 aaKnown RBP17.69■□□□□ 0.42
CTSA-215ENST00000607187 CUX1P39880 1505 aa17.69■□□□□ 0.42
CTSA-215ENST00000607187 ZNF608Q9ULD9 1512 aaPredicted RBP17.69■□□□□ 0.42
CTSA-215ENST00000607187 FGD5Q6ZNL6 1462 aa17.63■□□□□ 0.41
CTSA-215ENST00000607187 EIF4G3O43432 1585 aaKnown RBP17.63■□□□□ 0.41
CTSA-215ENST00000607187 SOGA1O94964 1423 aa17.61■□□□□ 0.41
CTSA-215ENST00000607187 RAD54L2Q9Y4B4 1467 aa17.61■□□□□ 0.41
CTSA-215ENST00000607187 AQRO60306 1485 aaKnown RBP eCLIP17.57■□□□□ 0.41e-7■■■■■ 32.3
CTSA-215ENST00000607187 WDR97A6NE52 1622 aa17.54■□□□□ 0.4
CTSA-215ENST00000607187 BIVM-ERCC5R4GMW8 1640 aa17.53■□□□□ 0.4
CTSA-215ENST00000607187 TOP2BQ02880 1626 aa17.52■□□□□ 0.4
CTSA-215ENST00000607187 OSCARQ8IYS5 282 aa17.52■□□□□ 0.4
CTSA-215ENST00000607187 TDRD9Q8NDG6 1382 aaKnown RBP17.52■□□□□ 0.39
CTSA-215ENST00000607187 WRNQ14191 1432 aaPredicted RBP eCLIP17.51■□□□□ 0.39
CTSA-215ENST00000607187 SYNJ1O43426 1573 aa17.49■□□□□ 0.39
CTSA-215ENST00000607187 ABCA10Q8WWZ4 1543 aa17.47■□□□□ 0.39
CTSA-215ENST00000607187 CHD1O14646 1710 aa17.45■□□□□ 0.38
CTSA-215ENST00000607187 ABCA5Q8WWZ7 1642 aa17.42■□□□□ 0.38
CTSA-215ENST00000607187 GRIN2BQ13224 1484 aa17.42■□□□□ 0.38
CTSA-215ENST00000607187 GAPVD1Q14C86 1478 aa17.42■□□□□ 0.38
CTSA-215ENST00000607187 PBRM1Q86U86 1689 aa17.42■□□□□ 0.38
CTSA-215ENST00000607187 SNAPC4Q5SXM2 1469 aa17.41■□□□□ 0.38
CTSA-215ENST00000607187 MAGI1Q96QZ7 1491 aaPredicted RBP17.39■□□□□ 0.37
CTSA-215ENST00000607187 FBLN2P98095 1184 aa17.35■□□□□ 0.37
CTSA-215ENST00000607187 CSRNP3Q8WYN3 585 aa17.33■□□□□ 0.36
CTSA-215ENST00000607187 SYNJ2O15056 1496 aa17.32■□□□□ 0.36
CTSA-215ENST00000607187 SLC4A1APQ9BWU0 796 aaKnown RBP17.31■□□□□ 0.36
CTSA-215ENST00000607187 CHMP7Q8WUX9 453 aaPredicted RBP17.3■□□□□ 0.36
CTSA-215ENST00000607187 RIMBP3CA6NJZ7 1639 aa17.27■□□□□ 0.36
CTSA-215ENST00000607187 RIMBP3BA6NNM3 1639 aa17.27■□□□□ 0.36
CTSA-215ENST00000607187 RIMBP3Q9UFD9 1639 aa17.27■□□□□ 0.36
CTSA-215ENST00000607187 ERICH3Q5RHP9 1530 aa17.26■□□□□ 0.35
CTSA-215ENST00000607187 ADAMTS12P58397 1594 aa17.25■□□□□ 0.35
CTSA-215ENST00000607187 ARHGEF11O15085 1522 aa17.25■□□□□ 0.35
CTSA-215ENST00000607187 CLASP1Q7Z460 1538 aa17.24■□□□□ 0.35
CTSA-215ENST00000607187 PPP4R3CPQ6ZMV5 832 aa17.22■□□□□ 0.35
CTSA-215ENST00000607187 GRIN2AQ12879 1464 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms