RNA–Protein interactions for RNA: ENST00000597146.1

LIG1-214, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-214ENST00000597146 NISCHQ9Y2I1 1504 aa40.06■■■■■ 4
LIG1-214ENST00000597146 ABCC9O60706 1549 aa37.1■■■■□ 3.53
LIG1-214ENST00000597146 CCDC180Q9P1Z9 1646 aa36.37■■■■□ 3.41
LIG1-214ENST00000597146 DNAJC5BQ9UF47 199 aa35.43■■■■□ 3.26
LIG1-214ENST00000597146 RB1CC1Q8TDY2 1594 aa34.93■■■■□ 3.18
LIG1-214ENST00000597146 NACADO15069 1562 aa34.47■■■■□ 3.11
LIG1-214ENST00000597146 PABPN1Q86U42 306 aaKnown RBP eCLIP34.34■■■■□ 3.095e-6■■■■□ 22.2
LIG1-214ENST00000597146 UNC13AQ9UPW8 1703 aa34.33■■■■□ 3.09
LIG1-214ENST00000597146 DCAF8L2P0C7V8 631 aa34.07■■■■□ 3.04
LIG1-214ENST00000597146 BICRAQ9NZM4 1560 aa34.02■■■■□ 3.04
LIG1-214ENST00000597146 MYO15BQ96JP2 1530 aa33.69■■■□□ 2.98
LIG1-214ENST00000597146 CC2D2AQ9P2K1 1620 aa33.5■■■□□ 2.95
LIG1-214ENST00000597146 CECR2Q9BXF3 1484 aa33.45■■■□□ 2.95
LIG1-214ENST00000597146 SHROOM4Q9ULL8 1493 aa33.35■■■□□ 2.93
LIG1-214ENST00000597146 EIF4G1Q04637 1599 aaKnown RBP33.21■■■□□ 2.91
LIG1-214ENST00000597146 SCRIBQ14160 1630 aa33.13■■■□□ 2.89
LIG1-214ENST00000597146 ZCCHC6Q5VYS8 1495 aaKnown RBP33.07■■■□□ 2.88
LIG1-214ENST00000597146 DNAJC5Q9H3Z4 198 aa33.01■■■□□ 2.87
LIG1-214ENST00000597146 DCAF1Q9Y4B6 1507 aa33.01■■■□□ 2.87
LIG1-214ENST00000597146 CUX2O14529 1486 aa32.22■■■□□ 2.75
LIG1-214ENST00000597146 ERCC6Q03468 1493 aa32.04■■■□□ 2.72
LIG1-214ENST00000597146 NCAPD3P42695 1498 aa31.79■■■□□ 2.68
LIG1-214ENST00000597146 NESP48681 1621 aa31.67■■■□□ 2.66
LIG1-214ENST00000597146 ATAD2BQ9ULI0 1458 aa31.64■■■□□ 2.66
LIG1-214ENST00000597146 HMGXB3Q12766 1538 aa31.57■■■□□ 2.64
LIG1-214ENST00000597146 THOC2Q8NI27 1593 aaKnown RBP31.56■■■□□ 2.64
LIG1-214ENST00000597146 SMARCA2P51531 1590 aa31.51■■■□□ 2.63
LIG1-214ENST00000597146 SMARCA4P51532 1647 aa31.49■■■□□ 2.63
LIG1-214ENST00000597146 KIF21AQ7Z4S6 1674 aa31.32■■■□□ 2.6
LIG1-214ENST00000597146 TRIM41Q8WV44 630 aa31.32■■■□□ 2.6
LIG1-214ENST00000597146 BAZ1BQ9UIG0 1483 aaKnown RBP31.31■■■□□ 2.6
LIG1-214ENST00000597146 LAMC3Q9Y6N6 1575 aa31.27■■■□□ 2.6
LIG1-214ENST00000597146 BAZ1AQ9NRL2 1556 aaPredicted RBP31.15■■■□□ 2.58
LIG1-214ENST00000597146 PEG3Q9GZU2 1588 aa31.13■■■□□ 2.57
LIG1-214ENST00000597146 PDS5BQ9NTI5 1447 aa31.03■■■□□ 2.56
LIG1-214ENST00000597146 MROH2BQ7Z745 1585 aa30.91■■■□□ 2.54
LIG1-214ENST00000597146 MRC2Q9UBG0 1479 aa30.89■■■□□ 2.54
LIG1-214ENST00000597146 WDR62O43379 1518 aa30.88■■■□□ 2.53
LIG1-214ENST00000597146 CADPSQ9ULU8 1353 aa30.78■■■□□ 2.52
LIG1-214ENST00000597146 CEP164Q9UPV0 1460 aa30.62■■■□□ 2.49
LIG1-214ENST00000597146 WIZO95785 1651 aa30.56■■■□□ 2.48
LIG1-214ENST00000597146 OSCARQ8IYS5 282 aa30.52■■■□□ 2.48
LIG1-214ENST00000597146 FANCD2Q9BXW9 1451 aa30.5■■■□□ 2.47
LIG1-214ENST00000597146 RIMBP3CA6NJZ7 1639 aa30.43■■■□□ 2.46
LIG1-214ENST00000597146 RIMBP3BA6NNM3 1639 aa30.43■■■□□ 2.46
LIG1-214ENST00000597146 RIMBP3Q9UFD9 1639 aa30.43■■■□□ 2.46
LIG1-214ENST00000597146 URB2Q14146 1524 aaKnown RBP30.34■■■□□ 2.45
LIG1-214ENST00000597146 CFTRP13569 1480 aa30.31■■■□□ 2.44
LIG1-214ENST00000597146 ARHGEF11O15085 1522 aa30.2■■■□□ 2.42
LIG1-214ENST00000597146 PRDM2Q13029 1718 aa30.13■■■□□ 2.41
LIG1-214ENST00000597146 ZNF608Q9ULD9 1512 aaPredicted RBP30.11■■■□□ 2.41
LIG1-214ENST00000597146 TOP2AP11388 1531 aaKnown RBP30.06■■■□□ 2.4
LIG1-214ENST00000597146 IFT140Q96RY7 1462 aa29.99■■■□□ 2.39
LIG1-214ENST00000597146 EIF4G3O43432 1585 aaKnown RBP29.96■■■□□ 2.39
LIG1-214ENST00000597146 CHD1O14646 1710 aa29.93■■■□□ 2.38
LIG1-214ENST00000597146 RSF1Q96T23 1441 aaPredicted RBP29.91■■■□□ 2.38
LIG1-214ENST00000597146 CYB5RLQ6IPT4 315 aa29.91■■■□□ 2.38
LIG1-214ENST00000597146 TOPBP1Q92547 1522 aa29.86■■■□□ 2.37
LIG1-214ENST00000597146 ARAP1Q96P48 1450 aa29.86■■■□□ 2.37
LIG1-214ENST00000597146 TRHP20396 242 aaPredicted RBP29.83■■■□□ 2.37
LIG1-214ENST00000597146 DNMBPQ6XZF7 1577 aa29.7■■■□□ 2.35
LIG1-214ENST00000597146 TARBP1Q13395 1621 aaKnown RBP29.7■■■□□ 2.34
LIG1-214ENST00000597146 CCDC88BA6NC98 1476 aa29.68■■■□□ 2.34
LIG1-214ENST00000597146 AQRO60306 1485 aaKnown RBP eCLIP29.68■■■□□ 2.34
LIG1-214ENST00000597146 ABCC8Q09428 1581 aa29.64■■■□□ 2.33
LIG1-214ENST00000597146 FBLN2P98095 1184 aa29.58■■■□□ 2.33
LIG1-214ENST00000597146 POLA1P09884 1462 aaPredicted RBP29.5■■■□□ 2.31
LIG1-214ENST00000597146 AEBP2Q6ZN18 517 aaPredicted RBP29.5■■■□□ 2.31
LIG1-214ENST00000597146 CLASP1Q7Z460 1538 aa29.48■■■□□ 2.31
LIG1-214ENST00000597146 RAD54L2Q9Y4B4 1467 aa29.42■■■□□ 2.3
LIG1-214ENST00000597146 SNAPC4Q5SXM2 1469 aa29.4■■■□□ 2.3
LIG1-214ENST00000597146 TDRD9Q8NDG6 1382 aaKnown RBP29.36■■■□□ 2.29
LIG1-214ENST00000597146 SYNJ1O43426 1573 aa29.35■■■□□ 2.29
LIG1-214ENST00000597146 SOGA1O94964 1423 aa29.28■■■□□ 2.28
LIG1-214ENST00000597146 WDR97A6NE52 1622 aa29.27■■■□□ 2.28
LIG1-214ENST00000597146 MAGI1Q96QZ7 1491 aaPredicted RBP29.23■■■□□ 2.27
LIG1-214ENST00000597146 FGD5Q6ZNL6 1462 aa29.23■■■□□ 2.27
LIG1-214ENST00000597146 CHMP7Q8WUX9 453 aaPredicted RBP29.2■■■□□ 2.26
LIG1-214ENST00000597146 SYNJ2O15056 1496 aa29.16■■■□□ 2.26
LIG1-214ENST00000597146 GAPVD1Q14C86 1478 aa29.16■■■□□ 2.26
LIG1-214ENST00000597146 PBRM1Q86U86 1689 aa29.15■■■□□ 2.26
LIG1-214ENST00000597146 GRIN2BQ13224 1484 aa29.14■■■□□ 2.26
LIG1-214ENST00000597146 CUX1P39880 1505 aa29.09■■■□□ 2.25
LIG1-214ENST00000597146 ERCC6L2Q5T890 1561 aa29.01■■■□□ 2.24
LIG1-214ENST00000597146 ABCA5Q8WWZ7 1642 aa28.93■■■□□ 2.22
LIG1-214ENST00000597146 KIF13AQ9H1H9 1805 aa28.89■■■□□ 2.22
LIG1-214ENST00000597146 CEP170Q5SW79 1584 aa28.84■■■□□ 2.21
LIG1-214ENST00000597146 GRIN2AQ12879 1464 aa28.81■■■□□ 2.2
LIG1-214ENST00000597146 ABCA10Q8WWZ4 1543 aa28.8■■■□□ 2.2
LIG1-214ENST00000597146 ADAMTS12P58397 1594 aa28.77■■■□□ 2.2
LIG1-214ENST00000597146 SHROOM2Q13796 1616 aa28.76■■■□□ 2.19
LIG1-214ENST00000597146 NUP160Q12769 1436 aa28.71■■■□□ 2.19
LIG1-214ENST00000597146 FHAD1B1AJZ9 1412 aa28.52■■■□□ 2.16
LIG1-214ENST00000597146 PRG4Q92954 1404 aaPredicted RBP28.49■■■□□ 2.15
LIG1-214ENST00000597146 WRNQ14191 1432 aaPredicted RBP eCLIP28.48■■■□□ 2.15
LIG1-214ENST00000597146 DIP2BQ9P265 1576 aa28.48■■■□□ 2.15
LIG1-214ENST00000597146 ABCC10Q5T3U5 1492 aa28.47■■■□□ 2.15
LIG1-214ENST00000597146 BIVM-ERCC5R4GMW8 1640 aa28.46■■■□□ 2.15
LIG1-214ENST00000597146 FAM69CQ0P6D2 419 aa28.43■■■□□ 2.14
LIG1-214ENST00000597146 KDM6BO15054 1643 aa28.43■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms