RNA–Protein interactions for RNA: ENST00000592395.5

TCF3-216, Transcript of transcription factor 3, humanhuman

TSL 5

Gene TCF3, Length 996 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF3-216ENST00000592395 NISCHQ9Y2I1 1504 aa45.18■■■■■ 4.82
TCF3-216ENST00000592395 CCDC180Q9P1Z9 1646 aa40.2■■■■■ 4.03
TCF3-216ENST00000592395 AEBP2Q6ZN18 517 aaPredicted RBP39.76■■■■□ 3.96
TCF3-216ENST00000592395 CHIC1Q5VXU3 224 aa39.31■■■■□ 3.88
TCF3-216ENST00000592395 ABCC9O60706 1549 aa39.19■■■■□ 3.86
TCF3-216ENST00000592395 RB1CC1Q8TDY2 1594 aa37.78■■■■□ 3.64
TCF3-216ENST00000592395 NACADO15069 1562 aa37.76■■■■□ 3.63
TCF3-216ENST00000592395 ZCCHC6Q5VYS8 1495 aaKnown RBP37.66■■■■□ 3.62
TCF3-216ENST00000592395 DCAF8L2P0C7V8 631 aa37.64■■■■□ 3.62
TCF3-216ENST00000592395 MYO15BQ96JP2 1530 aa37.56■■■■□ 3.6
TCF3-216ENST00000592395 DCAF1Q9Y4B6 1507 aa37.42■■■■□ 3.58
TCF3-216ENST00000592395 UNC13AQ9UPW8 1703 aa36.96■■■■□ 3.51
TCF3-216ENST00000592395 SCRIBQ14160 1630 aa36.64■■■■□ 3.46
TCF3-216ENST00000592395 BICRAQ9NZM4 1560 aa36.61■■■■□ 3.45
TCF3-216ENST00000592395 PABPN1Q86U42 306 aaKnown RBP eCLIP36.59■■■■□ 3.453e-7■□□□□ 8.9
TCF3-216ENST00000592395 SHROOM4Q9ULL8 1493 aa36.28■■■■□ 3.4
TCF3-216ENST00000592395 DNAJC5BQ9UF47 199 aa35.85■■■■□ 3.33
TCF3-216ENST00000592395 EIF4G1Q04637 1599 aaKnown RBP35.64■■■■□ 3.3
TCF3-216ENST00000592395 CC2D2AQ9P2K1 1620 aa35.49■■■■□ 3.27
TCF3-216ENST00000592395 CECR2Q9BXF3 1484 aa35.22■■■■□ 3.23
TCF3-216ENST00000592395 SMARCA4P51532 1647 aa35.07■■■■□ 3.21
TCF3-216ENST00000592395 BAZ1AQ9NRL2 1556 aaPredicted RBP35.04■■■■□ 3.2
TCF3-216ENST00000592395 ATAD2BQ9ULI0 1458 aa34.84■■■■□ 3.17
TCF3-216ENST00000592395 SMARCA2P51531 1590 aa34.83■■■■□ 3.17
TCF3-216ENST00000592395 MROH2BQ7Z745 1585 aa34.81■■■■□ 3.16
TCF3-216ENST00000592395 NCAPD3P42695 1498 aa34.8■■■■□ 3.16
TCF3-216ENST00000592395 PEG3Q9GZU2 1588 aa34.73■■■■□ 3.15
TCF3-216ENST00000592395 HMGXB3Q12766 1538 aa34.67■■■■□ 3.14
TCF3-216ENST00000592395 PHF23Q9BUL5 403 aaPredicted RBP34.66■■■■□ 3.14
TCF3-216ENST00000592395 BAZ1BQ9UIG0 1483 aaKnown RBP34.56■■■■□ 3.12
TCF3-216ENST00000592395 WIZO95785 1651 aa34.46■■■■□ 3.11
TCF3-216ENST00000592395 RSF1Q96T23 1441 aaPredicted RBP34.42■■■■□ 3.1
TCF3-216ENST00000592395 TOP2AP11388 1531 aaKnown RBP34.1■■■■□ 3.05
TCF3-216ENST00000592395 NESP48681 1621 aa33.93■■■■□ 3.02
TCF3-216ENST00000592395 LAMC3Q9Y6N6 1575 aa33.91■■■■□ 3.02
TCF3-216ENST00000592395 ERCC6Q03468 1493 aa33.79■■■■□ 3
TCF3-216ENST00000592395 CADPSQ9ULU8 1353 aa33.78■■■■□ 3
TCF3-216ENST00000592395 CCDC88BA6NC98 1476 aa33.67■■■□□ 2.98
TCF3-216ENST00000592395 PDS5BQ9NTI5 1447 aa33.65■■■□□ 2.98
TCF3-216ENST00000592395 CFTRP13569 1480 aa33.61■■■□□ 2.97
TCF3-216ENST00000592395 SENP3Q9H4L4 574 aaPredicted RBP33.59■■■□□ 2.97
TCF3-216ENST00000592395 KIF21AQ7Z4S6 1674 aa33.58■■■□□ 2.97
TCF3-216ENST00000592395 SUPT5HO00267 1087 aaKnown RBP33.56■■■□□ 2.96
TCF3-216ENST00000592395 THOC2Q8NI27 1593 aaKnown RBP33.46■■■□□ 2.95
TCF3-216ENST00000592395 PRDM2Q13029 1718 aa33.45■■■□□ 2.95
TCF3-216ENST00000592395 CUX2O14529 1486 aa33.44■■■□□ 2.94
TCF3-216ENST00000592395 FANCD2Q9BXW9 1451 aa33.41■■■□□ 2.94
TCF3-216ENST00000592395 CEP164Q9UPV0 1460 aa33.37■■■□□ 2.93
TCF3-216ENST00000592395 MRC2Q9UBG0 1479 aa33.31■■■□□ 2.92
TCF3-216ENST00000592395 WDR62O43379 1518 aa33.21■■■□□ 2.91
TCF3-216ENST00000592395 URB2Q14146 1524 aaKnown RBP33.07■■■□□ 2.88
TCF3-216ENST00000592395 ABCC8Q09428 1581 aa32.91■■■□□ 2.86
TCF3-216ENST00000592395 TOPBP1Q92547 1522 aa32.89■■■□□ 2.86
TCF3-216ENST00000592395 DNMBPQ6XZF7 1577 aa32.87■■■□□ 2.85
TCF3-216ENST00000592395 IFT140Q96RY7 1462 aa32.67■■■□□ 2.82
TCF3-216ENST00000592395 CUX1P39880 1505 aa32.67■■■□□ 2.82
TCF3-216ENST00000592395 POLA1P09884 1462 aaPredicted RBP32.61■■■□□ 2.81
TCF3-216ENST00000592395 TARBP1Q13395 1621 aaKnown RBP32.54■■■□□ 2.8
TCF3-216ENST00000592395 FGD5Q6ZNL6 1462 aa32.54■■■□□ 2.8
TCF3-216ENST00000592395 ZNF608Q9ULD9 1512 aaPredicted RBP32.48■■■□□ 2.79
TCF3-216ENST00000592395 WRNQ14191 1432 aaPredicted RBP eCLIP32.47■■■□□ 2.79
TCF3-216ENST00000592395 SOGA1O94964 1423 aa32.46■■■□□ 2.79
TCF3-216ENST00000592395 RAD54L2Q9Y4B4 1467 aa32.44■■■□□ 2.78
TCF3-216ENST00000592395 BIVM-ERCC5R4GMW8 1640 aa32.44■■■□□ 2.78
TCF3-216ENST00000592395 TOP2BQ02880 1626 aa32.42■■■□□ 2.78
TCF3-216ENST00000592395 EIF4G3O43432 1585 aaKnown RBP32.41■■■□□ 2.78
TCF3-216ENST00000592395 SYNJ1O43426 1573 aa32.4■■■□□ 2.78
TCF3-216ENST00000592395 WDR97A6NE52 1622 aa32.33■■■□□ 2.77
TCF3-216ENST00000592395 AQRO60306 1485 aaKnown RBP eCLIP32.3■■■□□ 2.763e-8■■■■□ 23.3
TCF3-216ENST00000592395 DNAJC5Q9H3Z4 198 aa32.27■■■□□ 2.76
TCF3-216ENST00000592395 TDRD9Q8NDG6 1382 aaKnown RBP32.24■■■□□ 2.75
TCF3-216ENST00000592395 ABCA10Q8WWZ4 1543 aa32.24■■■□□ 2.75
TCF3-216ENST00000592395 PLPPR3Q6T4P5 718 aa32.13■■■□□ 2.73
TCF3-216ENST00000592395 ABCA5Q8WWZ7 1642 aa32.13■■■□□ 2.73
TCF3-216ENST00000592395 GAPVD1Q14C86 1478 aa32.1■■■□□ 2.73
TCF3-216ENST00000592395 GRIN2BQ13224 1484 aa32.1■■■□□ 2.73
TCF3-216ENST00000592395 PBRM1Q86U86 1689 aa32.08■■■□□ 2.73
TCF3-216ENST00000592395 SNAPC4Q5SXM2 1469 aa32.03■■■□□ 2.72
TCF3-216ENST00000592395 MAGI1Q96QZ7 1491 aaPredicted RBP32.02■■■□□ 2.72
TCF3-216ENST00000592395 OSCARQ8IYS5 282 aa32.01■■■□□ 2.71
TCF3-216ENST00000592395 CHD1O14646 1710 aa32■■■□□ 2.71
TCF3-216ENST00000592395 FBLN2P98095 1184 aa31.88■■■□□ 2.69
TCF3-216ENST00000592395 SYNJ2O15056 1496 aa31.88■■■□□ 2.69
TCF3-216ENST00000592395 ERICH3Q5RHP9 1530 aa31.87■■■□□ 2.69
TCF3-216ENST00000592395 CHMP7Q8WUX9 453 aaPredicted RBP31.82■■■□□ 2.68
TCF3-216ENST00000592395 ADAMTS12P58397 1594 aa31.81■■■□□ 2.68
TCF3-216ENST00000592395 KIF27Q86VH2 1401 aa31.79■■■□□ 2.68
TCF3-216ENST00000592395 FHAD1B1AJZ9 1412 aa31.74■■■□□ 2.67
TCF3-216ENST00000592395 TRIM41Q8WV44 630 aa31.71■■■□□ 2.67
TCF3-216ENST00000592395 GRIN2AQ12879 1464 aa31.68■■■□□ 2.66
TCF3-216ENST00000592395 CLASP1Q7Z460 1538 aa31.64■■■□□ 2.66
TCF3-216ENST00000592395 IGF1RP08069 1367 aa31.62■■■□□ 2.65
TCF3-216ENST00000592395 CUL7Q14999 1698 aa31.61■■■□□ 2.65
TCF3-216ENST00000592395 NUP160Q12769 1436 aa31.54■■■□□ 2.64
TCF3-216ENST00000592395 RIMBP3CA6NJZ7 1639 aa31.53■■■□□ 2.64
TCF3-216ENST00000592395 RIMBP3BA6NNM3 1639 aa31.53■■■□□ 2.64
TCF3-216ENST00000592395 RIMBP3Q9UFD9 1639 aa31.53■■■□□ 2.64
TCF3-216ENST00000592395 CEP170Q5SW79 1584 aa31.53■■■□□ 2.64
TCF3-216ENST00000592395 ARHGEF11O15085 1522 aa31.53■■■□□ 2.64
TCF3-216ENST00000592395 RUSC2Q8N2Y8 1516 aa31.49■■■□□ 2.63
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms