RNA–Protein interactions for RNA: ENST00000591903.1

SDF2-209, Transcript of stromal cell derived factor 2, humanhuman

TSL 3

Gene SDF2, Length 735 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF2-209ENST00000591903 NISCHQ9Y2I1 1504 aa26.08■■□□□ 1.77
SDF2-209ENST00000591903 ABCC9O60706 1549 aa24.05■■□□□ 1.44
SDF2-209ENST00000591903 CCDC180Q9P1Z9 1646 aa23.73■■□□□ 1.39
SDF2-209ENST00000591903 DNAJC5BQ9UF47 199 aa22.92■■□□□ 1.26
SDF2-209ENST00000591903 RB1CC1Q8TDY2 1594 aa22.79■■□□□ 1.24
SDF2-209ENST00000591903 NACADO15069 1562 aa22.51■■□□□ 1.19
SDF2-209ENST00000591903 UNC13AQ9UPW8 1703 aa22.28■■□□□ 1.16
SDF2-209ENST00000591903 PABPN1Q86U42 306 aaKnown RBP eCLIP22.25■■□□□ 1.15
SDF2-209ENST00000591903 DCAF8L2P0C7V8 631 aa22.12■■□□□ 1.13
SDF2-209ENST00000591903 BICRAQ9NZM4 1560 aa22.08■■□□□ 1.12
SDF2-209ENST00000591903 MYO15BQ96JP2 1530 aa22.06■■□□□ 1.12
SDF2-209ENST00000591903 SHROOM4Q9ULL8 1493 aa21.85■■□□□ 1.09
SDF2-209ENST00000591903 CC2D2AQ9P2K1 1620 aa21.77■■□□□ 1.07
SDF2-209ENST00000591903 CECR2Q9BXF3 1484 aa21.76■■□□□ 1.07
SDF2-209ENST00000591903 EIF4G1Q04637 1599 aaKnown RBP21.6■■□□□ 1.05
SDF2-209ENST00000591903 DCAF1Q9Y4B6 1507 aa21.58■■□□□ 1.04
SDF2-209ENST00000591903 ZCCHC6Q5VYS8 1495 aaKnown RBP21.52■■□□□ 1.03
SDF2-209ENST00000591903 DNAJC5Q9H3Z4 198 aa21.51■■□□□ 1.03
SDF2-209ENST00000591903 SCRIBQ14160 1630 aa21.47■■□□□ 1.03
SDF2-209ENST00000591903 CUX2O14529 1486 aa21.04■□□□□ 0.96
SDF2-209ENST00000591903 ERCC6Q03468 1493 aa20.85■□□□□ 0.93
SDF2-209ENST00000591903 NCAPD3P42695 1498 aa20.75■□□□□ 0.91
SDF2-209ENST00000591903 HMGXB3Q12766 1538 aa20.58■□□□□ 0.89
SDF2-209ENST00000591903 ATAD2BQ9ULI0 1458 aa20.58■□□□□ 0.89
SDF2-209ENST00000591903 SMARCA2P51531 1590 aa20.56■□□□□ 0.88
SDF2-209ENST00000591903 NESP48681 1621 aa20.5■□□□□ 0.87
SDF2-209ENST00000591903 THOC2Q8NI27 1593 aaKnown RBP20.49■□□□□ 0.87
SDF2-209ENST00000591903 SMARCA4P51532 1647 aa20.48■□□□□ 0.87
SDF2-209ENST00000591903 LAMC3Q9Y6N6 1575 aa20.41■□□□□ 0.86
SDF2-209ENST00000591903 BAZ1BQ9UIG0 1483 aaKnown RBP20.37■□□□□ 0.85
SDF2-209ENST00000591903 BAZ1AQ9NRL2 1556 aaPredicted RBP20.32■□□□□ 0.84
SDF2-209ENST00000591903 KIF21AQ7Z4S6 1674 aa20.32■□□□□ 0.84
SDF2-209ENST00000591903 PEG3Q9GZU2 1588 aa20.31■□□□□ 0.84
SDF2-209ENST00000591903 TRIM41Q8WV44 630 aa20.3■□□□□ 0.84
SDF2-209ENST00000591903 PDS5BQ9NTI5 1447 aa20.27■□□□□ 0.84
SDF2-209ENST00000591903 MRC2Q9UBG0 1479 aa20.11■□□□□ 0.81
SDF2-209ENST00000591903 WDR62O43379 1518 aa20.09■□□□□ 0.81
SDF2-209ENST00000591903 CADPSQ9ULU8 1353 aa20.07■□□□□ 0.8
SDF2-209ENST00000591903 MROH2BQ7Z745 1585 aa20.04■□□□□ 0.8
SDF2-209ENST00000591903 CEP164Q9UPV0 1460 aa19.94■□□□□ 0.78
SDF2-209ENST00000591903 OSCARQ8IYS5 282 aa19.93■□□□□ 0.78
SDF2-209ENST00000591903 FANCD2Q9BXW9 1451 aa19.85■□□□□ 0.77
SDF2-209ENST00000591903 WIZO95785 1651 aa19.81■□□□□ 0.76
SDF2-209ENST00000591903 RIMBP3CA6NJZ7 1639 aa19.76■□□□□ 0.75
SDF2-209ENST00000591903 RIMBP3BA6NNM3 1639 aa19.76■□□□□ 0.75
SDF2-209ENST00000591903 RIMBP3Q9UFD9 1639 aa19.76■□□□□ 0.75
SDF2-209ENST00000591903 CFTRP13569 1480 aa19.74■□□□□ 0.75
SDF2-209ENST00000591903 URB2Q14146 1524 aaKnown RBP19.69■□□□□ 0.74
SDF2-209ENST00000591903 PRDM2Q13029 1718 aa19.65■□□□□ 0.74
SDF2-209ENST00000591903 ARHGEF11O15085 1522 aa19.62■□□□□ 0.73
SDF2-209ENST00000591903 IFT140Q96RY7 1462 aa19.56■□□□□ 0.72
SDF2-209ENST00000591903 TOP2AP11388 1531 aaKnown RBP19.56■□□□□ 0.72
SDF2-209ENST00000591903 ZNF608Q9ULD9 1512 aaPredicted RBP19.51■□□□□ 0.71
SDF2-209ENST00000591903 EIF4G3O43432 1585 aaKnown RBP19.44■□□□□ 0.7
SDF2-209ENST00000591903 RSF1Q96T23 1441 aaPredicted RBP19.44■□□□□ 0.7
SDF2-209ENST00000591903 CYB5RLQ6IPT4 315 aa19.44■□□□□ 0.7
SDF2-209ENST00000591903 CHD1O14646 1710 aa19.42■□□□□ 0.7
SDF2-209ENST00000591903 TOPBP1Q92547 1522 aa19.41■□□□□ 0.7
SDF2-209ENST00000591903 ABCC8Q09428 1581 aa19.41■□□□□ 0.7
SDF2-209ENST00000591903 TRHP20396 242 aaPredicted RBP19.4■□□□□ 0.7
SDF2-209ENST00000591903 ARAP1Q96P48 1450 aa19.37■□□□□ 0.69
SDF2-209ENST00000591903 DNMBPQ6XZF7 1577 aa19.33■□□□□ 0.69
SDF2-209ENST00000591903 TARBP1Q13395 1621 aaKnown RBP19.3■□□□□ 0.68
SDF2-209ENST00000591903 CCDC88BA6NC98 1476 aa19.28■□□□□ 0.68
SDF2-209ENST00000591903 AQRO60306 1485 aaKnown RBP eCLIP19.26■□□□□ 0.672e-8■■■□□ 18.6
SDF2-209ENST00000591903 AEBP2Q6ZN18 517 aaPredicted RBP19.25■□□□□ 0.67
SDF2-209ENST00000591903 FBLN2P98095 1184 aa19.22■□□□□ 0.67
SDF2-209ENST00000591903 WDR97A6NE52 1622 aa19.18■□□□□ 0.66
SDF2-209ENST00000591903 POLA1P09884 1462 aaPredicted RBP19.17■□□□□ 0.66
SDF2-209ENST00000591903 CLASP1Q7Z460 1538 aa19.16■□□□□ 0.66
SDF2-209ENST00000591903 SYNJ1O43426 1573 aa19.14■□□□□ 0.65
SDF2-209ENST00000591903 SNAPC4Q5SXM2 1469 aa19.09■□□□□ 0.65
SDF2-209ENST00000591903 MAGI1Q96QZ7 1491 aaPredicted RBP19.08■□□□□ 0.64
SDF2-209ENST00000591903 SOGA1O94964 1423 aa19.07■□□□□ 0.64
SDF2-209ENST00000591903 RAD54L2Q9Y4B4 1467 aa19.06■□□□□ 0.64
SDF2-209ENST00000591903 TDRD9Q8NDG6 1382 aaKnown RBP19.05■□□□□ 0.64
SDF2-209ENST00000591903 CHMP7Q8WUX9 453 aaPredicted RBP19.04■□□□□ 0.64
SDF2-209ENST00000591903 SYNJ2O15056 1496 aa19■□□□□ 0.63
SDF2-209ENST00000591903 GRIN2BQ13224 1484 aa18.99■□□□□ 0.63
SDF2-209ENST00000591903 FGD5Q6ZNL6 1462 aa18.98■□□□□ 0.63
SDF2-209ENST00000591903 GAPVD1Q14C86 1478 aa18.97■□□□□ 0.63
SDF2-209ENST00000591903 PBRM1Q86U86 1689 aa18.94■□□□□ 0.62
SDF2-209ENST00000591903 CUX1P39880 1505 aa18.88■□□□□ 0.61
SDF2-209ENST00000591903 ABCA5Q8WWZ7 1642 aa18.81■□□□□ 0.6
SDF2-209ENST00000591903 ABCA10Q8WWZ4 1543 aa18.76■□□□□ 0.59
SDF2-209ENST00000591903 KIF13AQ9H1H9 1805 aa18.76■□□□□ 0.59
SDF2-209ENST00000591903 GRIN2AQ12879 1464 aa18.75■□□□□ 0.59
SDF2-209ENST00000591903 ERCC6L2Q5T890 1561 aa18.75■□□□□ 0.59
SDF2-209ENST00000591903 CEP170Q5SW79 1584 aa18.73■□□□□ 0.59
SDF2-209ENST00000591903 SHROOM2Q13796 1616 aa18.71■□□□□ 0.59
SDF2-209ENST00000591903 NUP160Q12769 1436 aa18.7■□□□□ 0.58
SDF2-209ENST00000591903 ADAMTS12P58397 1594 aa18.69■□□□□ 0.58
SDF2-209ENST00000591903 FHAD1B1AJZ9 1412 aa18.6■□□□□ 0.57
SDF2-209ENST00000591903 WRNQ14191 1432 aaPredicted RBP eCLIP18.58■□□□□ 0.57
SDF2-209ENST00000591903 ERICH3Q5RHP9 1530 aa18.55■□□□□ 0.56
SDF2-209ENST00000591903 ABCC10Q5T3U5 1492 aa18.55■□□□□ 0.56
SDF2-209ENST00000591903 MAPKBP1O60336 1514 aa18.54■□□□□ 0.56
SDF2-209ENST00000591903 PRG4Q92954 1404 aaPredicted RBP18.53■□□□□ 0.56
SDF2-209ENST00000591903 BIVM-ERCC5R4GMW8 1640 aa18.52■□□□□ 0.56
SDF2-209ENST00000591903 FAM69CQ0P6D2 419 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms