RNA–Protein interactions for RNA: ENST00000581761.5

MKS1-211, Transcript of Meckel syndrome, type 1, humanhuman

TSL 3

Gene MKS1, Length 812 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-211ENST00000581761 NISCHQ9Y2I1 1504 aa32.93■■■□□ 2.86
MKS1-211ENST00000581761 CCDC180Q9P1Z9 1646 aa29.14■■■□□ 2.26
MKS1-211ENST00000581761 ABCC9O60706 1549 aa28.61■■■□□ 2.17
MKS1-211ENST00000581761 ZCCHC6Q5VYS8 1495 aaKnown RBP27.55■■■□□ 2
MKS1-211ENST00000581761 DCAF8L2P0C7V8 631 aa27.51■■□□□ 1.99
MKS1-211ENST00000581761 NACADO15069 1562 aa27.41■■□□□ 1.98
MKS1-211ENST00000581761 RB1CC1Q8TDY2 1594 aa27.41■■□□□ 1.98
MKS1-211ENST00000581761 MYO15BQ96JP2 1530 aa27.3■■□□□ 1.96
MKS1-211ENST00000581761 DCAF1Q9Y4B6 1507 aa27.21■■□□□ 1.95
MKS1-211ENST00000581761 SHROOM4Q9ULL8 1493 aa26.89■■□□□ 1.9
MKS1-211ENST00000581761 UNC13AQ9UPW8 1703 aa26.81■■□□□ 1.88
MKS1-211ENST00000581761 PABPN1Q86U42 306 aaKnown RBP eCLIP26.76■■□□□ 1.87
MKS1-211ENST00000581761 BICRAQ9NZM4 1560 aa26.67■■□□□ 1.86
MKS1-211ENST00000581761 SCRIBQ14160 1630 aa26.67■■□□□ 1.86
MKS1-211ENST00000581761 DNAJC5BQ9UF47 199 aa26.55■■□□□ 1.84
MKS1-211ENST00000581761 EIF4G1Q04637 1599 aaKnown RBP25.92■■□□□ 1.74
MKS1-211ENST00000581761 SUPT5HO00267 1087 aaKnown RBP25.92■■□□□ 1.74
MKS1-211ENST00000581761 CC2D2AQ9P2K1 1620 aa25.84■■□□□ 1.73
MKS1-211ENST00000581761 CECR2Q9BXF3 1484 aa25.73■■□□□ 1.71
MKS1-211ENST00000581761 SMARCA4P51532 1647 aa25.51■■□□□ 1.67
MKS1-211ENST00000581761 BAZ1AQ9NRL2 1556 aaPredicted RBP25.47■■□□□ 1.67
MKS1-211ENST00000581761 RSF1Q96T23 1441 aaPredicted RBP25.46■■□□□ 1.67
MKS1-211ENST00000581761 MROH2BQ7Z745 1585 aa25.42■■□□□ 1.66
MKS1-211ENST00000581761 ATAD2BQ9ULI0 1458 aa25.4■■□□□ 1.66
MKS1-211ENST00000581761 NCAPD3P42695 1498 aa25.36■■□□□ 1.65
MKS1-211ENST00000581761 SMARCA2P51531 1590 aa25.29■■□□□ 1.64
MKS1-211ENST00000581761 PEG3Q9GZU2 1588 aa25.27■■□□□ 1.64
MKS1-211ENST00000581761 HMGXB3Q12766 1538 aa25.18■■□□□ 1.62
MKS1-211ENST00000581761 BAZ1BQ9UIG0 1483 aaKnown RBP25.14■■□□□ 1.61
MKS1-211ENST00000581761 WIZO95785 1651 aa25.13■■□□□ 1.61
MKS1-211ENST00000581761 TOP2AP11388 1531 aaKnown RBP24.88■■□□□ 1.57
MKS1-211ENST00000581761 CHIC1Q5VXU3 224 aa24.87■■□□□ 1.57
MKS1-211ENST00000581761 NESP48681 1621 aa24.76■■□□□ 1.55
MKS1-211ENST00000581761 ERCC6Q03468 1493 aa24.7■■□□□ 1.55
MKS1-211ENST00000581761 CADPSQ9ULU8 1353 aa24.63■■□□□ 1.53
MKS1-211ENST00000581761 CCDC88BA6NC98 1476 aa24.62■■□□□ 1.53
MKS1-211ENST00000581761 LAMC3Q9Y6N6 1575 aa24.6■■□□□ 1.53
MKS1-211ENST00000581761 CFTRP13569 1480 aa24.5■■□□□ 1.51
MKS1-211ENST00000581761 CUX2O14529 1486 aa24.49■■□□□ 1.51
MKS1-211ENST00000581761 PDS5BQ9NTI5 1447 aa24.45■■□□□ 1.51
MKS1-211ENST00000581761 KIF21AQ7Z4S6 1674 aa24.38■■□□□ 1.49
MKS1-211ENST00000581761 TRIM41Q8WV44 630 aa24.35■■□□□ 1.49
MKS1-211ENST00000581761 FANCD2Q9BXW9 1451 aa24.32■■□□□ 1.48
MKS1-211ENST00000581761 THOC2Q8NI27 1593 aaKnown RBP24.31■■□□□ 1.48
MKS1-211ENST00000581761 CEP164Q9UPV0 1460 aa24.25■■□□□ 1.47
MKS1-211ENST00000581761 MRC2Q9UBG0 1479 aa24.21■■□□□ 1.47
MKS1-211ENST00000581761 PRDM2Q13029 1718 aa24.18■■□□□ 1.46
MKS1-211ENST00000581761 ABCC8Q09428 1581 aa24.16■■□□□ 1.46
MKS1-211ENST00000581761 WDR62O43379 1518 aa24.14■■□□□ 1.45
MKS1-211ENST00000581761 DNAJC5Q9H3Z4 198 aa24.13■■□□□ 1.45
MKS1-211ENST00000581761 URB2Q14146 1524 aaKnown RBP24.11■■□□□ 1.45
MKS1-211ENST00000581761 WRNQ14191 1432 aaPredicted RBP eCLIP23.99■■□□□ 1.43
MKS1-211ENST00000581761 TOPBP1Q92547 1522 aa23.95■■□□□ 1.43
MKS1-211ENST00000581761 FAM9AQ8IZU1 332 aaPredicted RBP23.95■■□□□ 1.42
MKS1-211ENST00000581761 LOC105371045A0A1W2PR82 267 aa23.92■■□□□ 1.42
MKS1-211ENST00000581761 DNMBPQ6XZF7 1577 aa23.89■■□□□ 1.41
MKS1-211ENST00000581761 SYNJ1O43426 1573 aa23.87■■□□□ 1.41
MKS1-211ENST00000581761 CUX1P39880 1505 aa23.83■■□□□ 1.41
MKS1-211ENST00000581761 POLA1P09884 1462 aaPredicted RBP23.77■■□□□ 1.4
MKS1-211ENST00000581761 TOP2BQ02880 1626 aa23.76■■□□□ 1.39
MKS1-211ENST00000581761 IFT140Q96RY7 1462 aa23.75■■□□□ 1.39
MKS1-211ENST00000581761 BIVM-ERCC5R4GMW8 1640 aa23.73■■□□□ 1.39
MKS1-211ENST00000581761 SOGA1O94964 1423 aa23.73■■□□□ 1.39
MKS1-211ENST00000581761 FGD5Q6ZNL6 1462 aa23.72■■□□□ 1.39
MKS1-211ENST00000581761 ZNF608Q9ULD9 1512 aaPredicted RBP23.71■■□□□ 1.39
MKS1-211ENST00000581761 EEA1Q15075 1411 aa23.71■■□□□ 1.39
MKS1-211ENST00000581761 RAD54L2Q9Y4B4 1467 aa23.7■■□□□ 1.38
MKS1-211ENST00000581761 TARBP1Q13395 1621 aaKnown RBP23.68■■□□□ 1.38
MKS1-211ENST00000581761 RUSC2Q8N2Y8 1516 aa23.63■■□□□ 1.37
MKS1-211ENST00000581761 EHMT2Q96KQ7 1210 aa23.62■■□□□ 1.37
MKS1-211ENST00000581761 AQRO60306 1485 aaKnown RBP eCLIP23.59■■□□□ 1.37
MKS1-211ENST00000581761 CSRNP3Q8WYN3 585 aa23.57■■□□□ 1.36
MKS1-211ENST00000581761 TDRD9Q8NDG6 1382 aaKnown RBP23.56■■□□□ 1.36
MKS1-211ENST00000581761 EIF4G3O43432 1585 aaKnown RBP23.54■■□□□ 1.36
MKS1-211ENST00000581761 OSCARQ8IYS5 282 aa23.48■■□□□ 1.35
MKS1-211ENST00000581761 ABCA10Q8WWZ4 1543 aa23.48■■□□□ 1.35
MKS1-211ENST00000581761 WDR97A6NE52 1622 aa23.47■■□□□ 1.35
MKS1-211ENST00000581761 GOLGA3Q08378 1498 aa23.42■■□□□ 1.34
MKS1-211ENST00000581761 KIF21BO75037 1637 aa23.4■■□□□ 1.34
MKS1-211ENST00000581761 GAPVD1Q14C86 1478 aa23.37■■□□□ 1.33
MKS1-211ENST00000581761 KIF27Q86VH2 1401 aa23.37■■□□□ 1.33
MKS1-211ENST00000581761 ABCA5Q8WWZ7 1642 aa23.37■■□□□ 1.33
MKS1-211ENST00000581761 TNIKQ9UKE5 1360 aa23.35■■□□□ 1.33
MKS1-211ENST00000581761 GRIN2BQ13224 1484 aa23.35■■□□□ 1.33
MKS1-211ENST00000581761 SNAPC4Q5SXM2 1469 aa23.33■■□□□ 1.33
MKS1-211ENST00000581761 UBTFP17480 764 aaKnown RBP23.31■■□□□ 1.32
MKS1-211ENST00000581761 MAGI1Q96QZ7 1491 aaPredicted RBP23.26■■□□□ 1.31
MKS1-211ENST00000581761 FBLN2P98095 1184 aa23.26■■□□□ 1.31
MKS1-211ENST00000581761 PBRM1Q86U86 1689 aa23.25■■□□□ 1.31
MKS1-211ENST00000581761 CEP162Q5TB80 1403 aa23.24■■□□□ 1.31
MKS1-211ENST00000581761 RAPGEF2Q9Y4G8 1499 aa23.24■■□□□ 1.31
MKS1-211ENST00000581761 PRXQ9BXM0 1461 aa23.23■■□□□ 1.31
MKS1-211ENST00000581761 ERICH3Q5RHP9 1530 aa23.21■■□□□ 1.31
MKS1-211ENST00000581761 CHD1O14646 1710 aa23.21■■□□□ 1.31
MKS1-211ENST00000581761 SYNJ2O15056 1496 aa23.19■■□□□ 1.3
MKS1-211ENST00000581761 CHMP7Q8WUX9 453 aaPredicted RBP23.19■■□□□ 1.3
MKS1-211ENST00000581761 IGF1RP08069 1367 aa23.14■■□□□ 1.29
MKS1-211ENST00000581761 ADAMTS12P58397 1594 aa23.12■■□□□ 1.29
MKS1-211ENST00000581761 RIMBP3CA6NJZ7 1639 aa23.11■■□□□ 1.29
MKS1-211ENST00000581761 RIMBP3BA6NNM3 1639 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms