RNA–Protein interactions for RNA: ENST00000578663.1

CDK5RAP3-209, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 3

Gene CDK5RAP3, Length 949 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-209ENST00000578663 NISCHQ9Y2I1 1504 aa18.62■□□□□ 0.57
CDK5RAP3-209ENST00000578663 ABCC9O60706 1549 aa18.12■□□□□ 0.49
CDK5RAP3-209ENST00000578663 DNAJC5BQ9UF47 199 aa18.05■□□□□ 0.48
CDK5RAP3-209ENST00000578663 DNAJC5Q9H3Z4 198 aa17.31■□□□□ 0.36
CDK5RAP3-209ENST00000578663 CCDC180Q9P1Z9 1646 aa17.1■□□□□ 0.33
CDK5RAP3-209ENST00000578663 RB1CC1Q8TDY2 1594 aa16.75■□□□□ 0.27
CDK5RAP3-209ENST00000578663 PABPN1Q86U42 306 aaKnown RBP eCLIP16.63■□□□□ 0.253e-10■■■□□ 15
CDK5RAP3-209ENST00000578663 UNC13AQ9UPW8 1703 aa16.6■□□□□ 0.25
CDK5RAP3-209ENST00000578663 BICRAQ9NZM4 1560 aa16.43■□□□□ 0.22
CDK5RAP3-209ENST00000578663 CECR2Q9BXF3 1484 aa16.42■□□□□ 0.22
CDK5RAP3-209ENST00000578663 CC2D2AQ9P2K1 1620 aa16.37■□□□□ 0.21
CDK5RAP3-209ENST00000578663 NACADO15069 1562 aa16.35■□□□□ 0.21
CDK5RAP3-209ENST00000578663 CUX2O14529 1486 aa16.06■□□□□ 0.16
CDK5RAP3-209ENST00000578663 EIF4G1Q04637 1599 aaKnown RBP16.04■□□□□ 0.16
CDK5RAP3-209ENST00000578663 TRIM41Q8WV44 630 aa16.03■□□□□ 0.16
CDK5RAP3-209ENST00000578663 SHROOM4Q9ULL8 1493 aa15.94■□□□□ 0.14
CDK5RAP3-209ENST00000578663 DCAF8L2P0C7V8 631 aa15.86■□□□□ 0.13
CDK5RAP3-209ENST00000578663 MYO15BQ96JP2 1530 aa15.82■□□□□ 0.12
CDK5RAP3-209ENST00000578663 ERCC6Q03468 1493 aa15.65■□□□□ 0.1
CDK5RAP3-209ENST00000578663 SCRIBQ14160 1630 aa15.48■□□□□ 0.07
CDK5RAP3-209ENST00000578663 DCAF1Q9Y4B6 1507 aa15.45■□□□□ 0.06
CDK5RAP3-209ENST00000578663 THOC2Q8NI27 1593 aaKnown RBP15.42■□□□□ 0.06
CDK5RAP3-209ENST00000578663 ZCCHC6Q5VYS8 1495 aaKnown RBP15.39■□□□□ 0.05
CDK5RAP3-209ENST00000578663 AEBP2Q6ZN18 517 aaPredicted RBP15.31■□□□□ 0.04
CDK5RAP3-209ENST00000578663 NESP48681 1621 aa15.29■□□□□ 0.04
CDK5RAP3-209ENST00000578663 BAZ1AQ9NRL2 1556 aaPredicted RBP15.19■□□□□ 0.02
CDK5RAP3-209ENST00000578663 RIMBP3CA6NJZ7 1639 aa15.17■□□□□ 0.02
CDK5RAP3-209ENST00000578663 RIMBP3BA6NNM3 1639 aa15.17■□□□□ 0.02
CDK5RAP3-209ENST00000578663 RIMBP3Q9UFD9 1639 aa15.17■□□□□ 0.02
CDK5RAP3-209ENST00000578663 KIF21AQ7Z4S6 1674 aa15.14■□□□□ 0.01
CDK5RAP3-209ENST00000578663 SMARCA2P51531 1590 aa15.14■□□□□ 0.01
CDK5RAP3-209ENST00000578663 NCAPD3P42695 1498 aa15.1■□□□□ 0.01
CDK5RAP3-209ENST00000578663 OSCARQ8IYS5 282 aa15.04■□□□□ -0
CDK5RAP3-209ENST00000578663 ILDR1Q86SU0 546 aaPredicted RBP15.01□□□□□ -0.01
CDK5RAP3-209ENST00000578663 LAMC3Q9Y6N6 1575 aa14.97□□□□□ -0.01
CDK5RAP3-209ENST00000578663 ARHGEF11O15085 1522 aa14.94□□□□□ -0.02
CDK5RAP3-209ENST00000578663 TRHP20396 242 aaPredicted RBP14.94□□□□□ -0.02
CDK5RAP3-209ENST00000578663 HMGXB3Q12766 1538 aa14.92□□□□□ -0.02
CDK5RAP3-209ENST00000578663 ATAD2BQ9ULI0 1458 aa14.91□□□□□ -0.02
CDK5RAP3-209ENST00000578663 WDR62O43379 1518 aa14.88□□□□□ -0.03
CDK5RAP3-209ENST00000578663 MRC2Q9UBG0 1479 aa14.82□□□□□ -0.04
CDK5RAP3-209ENST00000578663 PDS5BQ9NTI5 1447 aa14.82□□□□□ -0.04
CDK5RAP3-209ENST00000578663 CYB5RLQ6IPT4 315 aa14.79□□□□□ -0.04
CDK5RAP3-209ENST00000578663 ARAP1Q96P48 1450 aa14.73□□□□□ -0.05
CDK5RAP3-209ENST00000578663 SMARCA4P51532 1647 aa14.66□□□□□ -0.06
CDK5RAP3-209ENST00000578663 BAZ1BQ9UIG0 1483 aaKnown RBP14.66□□□□□ -0.06
CDK5RAP3-209ENST00000578663 CADPSQ9ULU8 1353 aa14.55□□□□□ -0.08
CDK5RAP3-209ENST00000578663 PEG3Q9GZU2 1588 aa14.54□□□□□ -0.08
CDK5RAP3-209ENST00000578663 CEP164Q9UPV0 1460 aa14.52□□□□□ -0.08
CDK5RAP3-209ENST00000578663 CHD1O14646 1710 aa14.5□□□□□ -0.09
CDK5RAP3-209ENST00000578663 RSF1Q96T23 1441 aaPredicted RBP14.44□□□□□ -0.1
CDK5RAP3-209ENST00000578663 URB2Q14146 1524 aaKnown RBP14.43□□□□□ -0.1
CDK5RAP3-209ENST00000578663 ZNF608Q9ULD9 1512 aaPredicted RBP14.43□□□□□ -0.1
CDK5RAP3-209ENST00000578663 FANCD2Q9BXW9 1451 aa14.42□□□□□ -0.1
CDK5RAP3-209ENST00000578663 KDM4FA0A1W2PPD8 638 aa14.33□□□□□ -0.12
CDK5RAP3-209ENST00000578663 EIF4G3O43432 1585 aaKnown RBP14.33□□□□□ -0.12
CDK5RAP3-209ENST00000578663 MROH2BQ7Z745 1585 aa14.3□□□□□ -0.12
CDK5RAP3-209ENST00000578663 KIF13AQ9H1H9 1805 aa14.27□□□□□ -0.12
CDK5RAP3-209ENST00000578663 IFT140Q96RY7 1462 aa14.27□□□□□ -0.12
CDK5RAP3-209ENST00000578663 CLASP1Q7Z460 1538 aa14.25□□□□□ -0.13
CDK5RAP3-209ENST00000578663 ERCC6L2Q5T890 1561 aa14.23□□□□□ -0.13
CDK5RAP3-209ENST00000578663 CFTRP13569 1480 aa14.18□□□□□ -0.14
CDK5RAP3-209ENST00000578663 HECW2Q9P2P5 1572 aa14.17□□□□□ -0.14
CDK5RAP3-209ENST00000578663 LMTK3Q96Q04 1460 aa14.16□□□□□ -0.14
CDK5RAP3-209ENST00000578663 FBXO41Q8TF61 875 aa14.15□□□□□ -0.14
CDK5RAP3-209ENST00000578663 PRDM2Q13029 1718 aa14.12□□□□□ -0.15
CDK5RAP3-209ENST00000578663 FBLN2P98095 1184 aa14.12□□□□□ -0.15
CDK5RAP3-209ENST00000578663 AQRO60306 1485 aaKnown RBP eCLIP14.12□□□□□ -0.15
CDK5RAP3-209ENST00000578663 GAPVD1Q14C86 1478 aa14.1□□□□□ -0.15
CDK5RAP3-209ENST00000578663 WIZO95785 1651 aa14.09□□□□□ -0.15
CDK5RAP3-209ENST00000578663 TARBP1Q13395 1621 aaKnown RBP14.08□□□□□ -0.15
CDK5RAP3-209ENST00000578663 SOCS7O14512 581 aa14.08□□□□□ -0.16
CDK5RAP3-209ENST00000578663 TOPBP1Q92547 1522 aa14.05□□□□□ -0.16
CDK5RAP3-209ENST00000578663 SYNJ1O43426 1573 aa14.05□□□□□ -0.16
CDK5RAP3-209ENST00000578663 ILDR2Q71H61 639 aa14.04□□□□□ -0.16
CDK5RAP3-209ENST00000578663 KDM6BO15054 1643 aa13.99□□□□□ -0.17
CDK5RAP3-209ENST00000578663 TOP2AP11388 1531 aaKnown RBP13.96□□□□□ -0.17
CDK5RAP3-209ENST00000578663 ADGRL1O94910 1474 aa13.94□□□□□ -0.18
CDK5RAP3-209ENST00000578663 SNAPC4Q5SXM2 1469 aa13.94□□□□□ -0.18
CDK5RAP3-209ENST00000578663 SYNJ2O15056 1496 aa13.92□□□□□ -0.18
CDK5RAP3-209ENST00000578663 DNMBPQ6XZF7 1577 aa13.9□□□□□ -0.18
CDK5RAP3-209ENST00000578663 TSPOAP1O95153 1857 aa13.88□□□□□ -0.19
CDK5RAP3-209ENST00000578663 ABCC8Q09428 1581 aa13.87□□□□□ -0.19
CDK5RAP3-209ENST00000578663 DIP2BQ9P265 1576 aa13.86□□□□□ -0.19
CDK5RAP3-209ENST00000578663 ABCC10Q5T3U5 1492 aa13.86□□□□□ -0.19
CDK5RAP3-209ENST00000578663 CHMP7Q8WUX9 453 aaPredicted RBP13.84□□□□□ -0.19
CDK5RAP3-209ENST00000578663 POLA1P09884 1462 aaPredicted RBP13.83□□□□□ -0.2
CDK5RAP3-209ENST00000578663 MAGI1Q96QZ7 1491 aaPredicted RBP13.83□□□□□ -0.2
CDK5RAP3-209ENST00000578663 TDRD9Q8NDG6 1382 aaKnown RBP13.82□□□□□ -0.2
CDK5RAP3-209ENST00000578663 DISP3Q9P2K9 1392 aa13.81□□□□□ -0.2
CDK5RAP3-209ENST00000578663 RAD54L2Q9Y4B4 1467 aa13.8□□□□□ -0.2
CDK5RAP3-209ENST00000578663 FAM69CQ0P6D2 419 aa13.8□□□□□ -0.2
CDK5RAP3-209ENST00000578663 WDR97A6NE52 1622 aa13.79□□□□□ -0.2
CDK5RAP3-209ENST00000578663 CEP170Q5SW79 1584 aa13.77□□□□□ -0.21
CDK5RAP3-209ENST00000578663 CCDC88BA6NC98 1476 aa13.74□□□□□ -0.21
CDK5RAP3-209ENST00000578663 MAPKBP1O60336 1514 aa13.74□□□□□ -0.21
CDK5RAP3-209ENST00000578663 PBRM1Q86U86 1689 aa13.73□□□□□ -0.21
CDK5RAP3-209ENST00000578663 SHROOM2Q13796 1616 aa13.73□□□□□ -0.21
CDK5RAP3-209ENST00000578663 GRIN2BQ13224 1484 aa13.71□□□□□ -0.21
CDK5RAP3-209ENST00000578663 SPATA31D1Q6ZQQ2 1576 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms