RNA–Protein interactions for RNA: ENST00000563522.5

PDXDC1-208, Transcript of pyridoxal dependent decarboxylase domain containing 1, humanhuman

TSL 4

Gene PDXDC1, Length 556 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDXDC1-208ENST00000563522 AEBP2Q6ZN18 517 aaPredicted RBP22.96■■□□□ 1.27
PDXDC1-208ENST00000563522 CHIC1Q5VXU3 224 aa22.2■■□□□ 1.14
PDXDC1-208ENST00000563522 NISCHQ9Y2I1 1504 aa20.68■□□□□ 0.9
PDXDC1-208ENST00000563522 SENP3Q9H4L4 574 aaPredicted RBP19.67■□□□□ 0.74
PDXDC1-208ENST00000563522 PHF23Q9BUL5 403 aaPredicted RBP19.42■□□□□ 0.7
PDXDC1-208ENST00000563522 ABCC9O60706 1549 aa18.68■□□□□ 0.58
PDXDC1-208ENST00000563522 CCDC180Q9P1Z9 1646 aa18.6■□□□□ 0.57
PDXDC1-208ENST00000563522 FOXD1Q16676 465 aa18.21■□□□□ 0.51
PDXDC1-208ENST00000563522 PLPPR3Q6T4P5 718 aa17.95■□□□□ 0.46
PDXDC1-208ENST00000563522 RB1CC1Q8TDY2 1594 aa17.78■□□□□ 0.44
PDXDC1-208ENST00000563522 NACADO15069 1562 aa17.64■□□□□ 0.41
PDXDC1-208ENST00000563522 DNAJC5BQ9UF47 199 aa17.63■□□□□ 0.41
PDXDC1-208ENST00000563522 DCAF8L2P0C7V8 631 aa17.43■□□□□ 0.38
PDXDC1-208ENST00000563522 MYO15BQ96JP2 1530 aa17.42■□□□□ 0.38
PDXDC1-208ENST00000563522 PABPN1Q86U42 306 aaKnown RBP eCLIP17.36■□□□□ 0.37
PDXDC1-208ENST00000563522 UNC13AQ9UPW8 1703 aa17.24■□□□□ 0.35
PDXDC1-208ENST00000563522 ADRA2BP18089 450 aa17.24■□□□□ 0.35
PDXDC1-208ENST00000563522 PPP6R1Q9UPN7 881 aa17.23■□□□□ 0.35
PDXDC1-208ENST00000563522 BICRAQ9NZM4 1560 aa17.23■□□□□ 0.35
PDXDC1-208ENST00000563522 PIAS4Q8N2W9 510 aaPredicted RBP17.17■□□□□ 0.34
PDXDC1-208ENST00000563522 DCAF1Q9Y4B6 1507 aa17.13■□□□□ 0.33
PDXDC1-208ENST00000563522 ZCCHC6Q5VYS8 1495 aaKnown RBP17.12■□□□□ 0.33
PDXDC1-208ENST00000563522 SHROOM4Q9ULL8 1493 aa17.11■□□□□ 0.33
PDXDC1-208ENST00000563522 MSH5O43196 834 aa17.02■□□□□ 0.32
PDXDC1-208ENST00000563522 SCRIBQ14160 1630 aa16.88■□□□□ 0.29
PDXDC1-208ENST00000563522 CECR2Q9BXF3 1484 aa16.87■□□□□ 0.29
PDXDC1-208ENST00000563522 CC2D2AQ9P2K1 1620 aa16.87■□□□□ 0.29
PDXDC1-208ENST00000563522 EIF4G1Q04637 1599 aaKnown RBP16.82■□□□□ 0.28
PDXDC1-208ENST00000563522 DNAJC5Q9H3Z4 198 aa16.34■□□□□ 0.21
PDXDC1-208ENST00000563522 NCAPD3P42695 1498 aa16.3■□□□□ 0.2
PDXDC1-208ENST00000563522 CUX2O14529 1486 aa16.22■□□□□ 0.19
PDXDC1-208ENST00000563522 ATAD2BQ9ULI0 1458 aa16.21■□□□□ 0.19
PDXDC1-208ENST00000563522 SMARCA2P51531 1590 aa16.17■□□□□ 0.18
PDXDC1-208ENST00000563522 ERCC6Q03468 1493 aa16.16■□□□□ 0.18
PDXDC1-208ENST00000563522 HMGXB3Q12766 1538 aa16.16■□□□□ 0.18
PDXDC1-208ENST00000563522 SMARCA4P51532 1647 aa16.12■□□□□ 0.17
PDXDC1-208ENST00000563522 BAZ1AQ9NRL2 1556 aaPredicted RBP16.07■□□□□ 0.16
PDXDC1-208ENST00000563522 BAZ1BQ9UIG0 1483 aaKnown RBP16.03■□□□□ 0.16
PDXDC1-208ENST00000563522 PEG3Q9GZU2 1588 aa16.02■□□□□ 0.16
PDXDC1-208ENST00000563522 NESP48681 1621 aa16■□□□□ 0.15
PDXDC1-208ENST00000563522 POTEDQ86YR6 584 aa15.97■□□□□ 0.15
PDXDC1-208ENST00000563522 SCAF1Q9H7N4 1312 aaKnown RBP15.94■□□□□ 0.14
PDXDC1-208ENST00000563522 LAMC3Q9Y6N6 1575 aa15.92■□□□□ 0.14
PDXDC1-208ENST00000563522 MROH2BQ7Z745 1585 aa15.9■□□□□ 0.14
PDXDC1-208ENST00000563522 THOC2Q8NI27 1593 aaKnown RBP15.87■□□□□ 0.13
PDXDC1-208ENST00000563522 PDS5BQ9NTI5 1447 aa15.86■□□□□ 0.13
PDXDC1-208ENST00000563522 CADPSQ9ULU8 1353 aa15.79■□□□□ 0.12
PDXDC1-208ENST00000563522 KIF21AQ7Z4S6 1674 aa15.76■□□□□ 0.11
PDXDC1-208ENST00000563522 PPP4R3CPQ6ZMV5 832 aa15.75■□□□□ 0.11
PDXDC1-208ENST00000563522 MAPK8IP2Q13387 824 aaPredicted RBP15.73■□□□□ 0.11
PDXDC1-208ENST00000563522 MRC2Q9UBG0 1479 aa15.71■□□□□ 0.11
PDXDC1-208ENST00000563522 WDR62O43379 1518 aa15.67■□□□□ 0.1
PDXDC1-208ENST00000563522 WIZO95785 1651 aa15.65■□□□□ 0.1
PDXDC1-208ENST00000563522 CEP164Q9UPV0 1460 aa15.62■□□□□ 0.09
PDXDC1-208ENST00000563522 DMRT2Q9Y5R5 561 aa15.61■□□□□ 0.09
PDXDC1-208ENST00000563522 FANCD2Q9BXW9 1451 aa15.59■□□□□ 0.09
PDXDC1-208ENST00000563522 CFTRP13569 1480 aa15.59■□□□□ 0.09
PDXDC1-208ENST00000563522 RSF1Q96T23 1441 aaPredicted RBP15.56■□□□□ 0.08
PDXDC1-208ENST00000563522 TOP2AP11388 1531 aaKnown RBP15.53■□□□□ 0.08
PDXDC1-208ENST00000563522 TRIM41Q8WV44 630 aa15.5■□□□□ 0.07
PDXDC1-208ENST00000563522 URB2Q14146 1524 aaKnown RBP15.46■□□□□ 0.07
PDXDC1-208ENST00000563522 OSCARQ8IYS5 282 aa15.45■□□□□ 0.06
PDXDC1-208ENST00000563522 CNKSR2Q8WXI2 1034 aa15.4■□□□□ 0.06
PDXDC1-208ENST00000563522 NCBP3Q53F19 620 aaKnown RBP15.34■□□□□ 0.05
PDXDC1-208ENST00000563522 CCDC88BA6NC98 1476 aa15.33■□□□□ 0.05
PDXDC1-208ENST00000563522 IFT140Q96RY7 1462 aa15.33■□□□□ 0.05
PDXDC1-208ENST00000563522 PRDM2Q13029 1718 aa15.32■□□□□ 0.04
PDXDC1-208ENST00000563522 ABCC8Q09428 1581 aa15.29■□□□□ 0.04
PDXDC1-208ENST00000563522 TOPBP1Q92547 1522 aa15.27■□□□□ 0.04
PDXDC1-208ENST00000563522 ZNF608Q9ULD9 1512 aaPredicted RBP15.27■□□□□ 0.03
PDXDC1-208ENST00000563522 DNMBPQ6XZF7 1577 aa15.21■□□□□ 0.03
PDXDC1-208ENST00000563522 RIMBP3CA6NJZ7 1639 aa15.2■□□□□ 0.02
PDXDC1-208ENST00000563522 RIMBP3BA6NNM3 1639 aa15.2■□□□□ 0.02
PDXDC1-208ENST00000563522 RIMBP3Q9UFD9 1639 aa15.2■□□□□ 0.02
PDXDC1-208ENST00000563522 EIF4G3O43432 1585 aaKnown RBP15.17■□□□□ 0.02
PDXDC1-208ENST00000563522 ARHGEF11O15085 1522 aa15.17■□□□□ 0.02
PDXDC1-208ENST00000563522 RNF216Q9NWF9 866 aaPredicted RBP15.16■□□□□ 0.02
PDXDC1-208ENST00000563522 HOXD11P31277 338 aaPredicted RBP15.15■□□□□ 0.02
PDXDC1-208ENST00000563522 TARBP1Q13395 1621 aaKnown RBP15.14■□□□□ 0.01
PDXDC1-208ENST00000563522 AQRO60306 1485 aaKnown RBP eCLIP15.12■□□□□ 0.011e-13■■■■□ 23.4
PDXDC1-208ENST00000563522 POLA1P09884 1462 aaPredicted RBP15.11■□□□□ 0.01
PDXDC1-208ENST00000563522 DCAF8L1A6NGE4 600 aa15.06■□□□□ 0
PDXDC1-208ENST00000563522 CYB5RLQ6IPT4 315 aa15.05■□□□□ -0
PDXDC1-208ENST00000563522 SOGA1O94964 1423 aa15.05■□□□□ -0
PDXDC1-208ENST00000563522 WDR97A6NE52 1622 aa15.03■□□□□ -0
PDXDC1-208ENST00000563522 FBLN2P98095 1184 aa15.03■□□□□ -0
PDXDC1-208ENST00000563522 CHD1O14646 1710 aa15.03■□□□□ -0
PDXDC1-208ENST00000563522 RAD54L2Q9Y4B4 1467 aa15.02■□□□□ -0
PDXDC1-208ENST00000563522 TDRD9Q8NDG6 1382 aaKnown RBP15.01□□□□□ -0.01
PDXDC1-208ENST00000563522 ARAP1Q96P48 1450 aa15.01□□□□□ -0.01
PDXDC1-208ENST00000563522 NPM3O75607 178 aaKnown RBP14.99□□□□□ -0.01
PDXDC1-208ENST00000563522 FGD5Q6ZNL6 1462 aa14.99□□□□□ -0.01
PDXDC1-208ENST00000563522 KCNA4P22459 653 aa14.98□□□□□ -0.01
PDXDC1-208ENST00000563522 MAGI1Q96QZ7 1491 aaPredicted RBP14.97□□□□□ -0.01
PDXDC1-208ENST00000563522 SNAPC4Q5SXM2 1469 aa14.96□□□□□ -0.01
PDXDC1-208ENST00000563522 GRIN2BQ13224 1484 aa14.95□□□□□ -0.02
PDXDC1-208ENST00000563522 CHMP7Q8WUX9 453 aaPredicted RBP14.95□□□□□ -0.02
PDXDC1-208ENST00000563522 CUX1P39880 1505 aa14.95□□□□□ -0.02
PDXDC1-208ENST00000563522 CLASP1Q7Z460 1538 aa14.94□□□□□ -0.02
PDXDC1-208ENST00000563522 TRHP20396 242 aaPredicted RBP14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms