RNA–Protein interactions for RNA: ENST00000563343.5

HERPUD1-206, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 4

Gene HERPUD1, Length 567 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-206ENST00000563343 NISCHQ9Y2I1 1504 aa20.32■□□□□ 0.84
HERPUD1-206ENST00000563343 ABCC9O60706 1549 aa18.83■□□□□ 0.6
HERPUD1-206ENST00000563343 CCDC180Q9P1Z9 1646 aa18.52■□□□□ 0.55
HERPUD1-206ENST00000563343 DNAJC5BQ9UF47 199 aa18.1■□□□□ 0.49
HERPUD1-206ENST00000563343 AEBP2Q6ZN18 517 aaPredicted RBP17.99■□□□□ 0.47
HERPUD1-206ENST00000563343 RB1CC1Q8TDY2 1594 aa17.77■□□□□ 0.44
HERPUD1-206ENST00000563343 NACADO15069 1562 aa17.54■□□□□ 0.4
HERPUD1-206ENST00000563343 UNC13AQ9UPW8 1703 aa17.54■□□□□ 0.4
HERPUD1-206ENST00000563343 CHIC1Q5VXU3 224 aa17.5■□□□□ 0.39
HERPUD1-206ENST00000563343 PABPN1Q86U42 306 aaKnown RBP eCLIP17.39■□□□□ 0.37
HERPUD1-206ENST00000563343 BICRAQ9NZM4 1560 aa17.36■□□□□ 0.37
HERPUD1-206ENST00000563343 MYO15BQ96JP2 1530 aa17.17■□□□□ 0.34
HERPUD1-206ENST00000563343 DCAF8L2P0C7V8 631 aa17.13■□□□□ 0.33
HERPUD1-206ENST00000563343 CC2D2AQ9P2K1 1620 aa17.07■□□□□ 0.32
HERPUD1-206ENST00000563343 CECR2Q9BXF3 1484 aa17■□□□□ 0.31
HERPUD1-206ENST00000563343 SHROOM4Q9ULL8 1493 aa17■□□□□ 0.31
HERPUD1-206ENST00000563343 DNAJC5Q9H3Z4 198 aa16.91■□□□□ 0.3
HERPUD1-206ENST00000563343 EIF4G1Q04637 1599 aaKnown RBP16.9■□□□□ 0.3
HERPUD1-206ENST00000563343 DCAF1Q9Y4B6 1507 aa16.79■□□□□ 0.28
HERPUD1-206ENST00000563343 SCRIBQ14160 1630 aa16.77■□□□□ 0.27
HERPUD1-206ENST00000563343 ZCCHC6Q5VYS8 1495 aaKnown RBP16.76■□□□□ 0.27
HERPUD1-206ENST00000563343 CUX2O14529 1486 aa16.44■□□□□ 0.22
HERPUD1-206ENST00000563343 ERCC6Q03468 1493 aa16.23■□□□□ 0.19
HERPUD1-206ENST00000563343 NCAPD3P42695 1498 aa16.18■□□□□ 0.18
HERPUD1-206ENST00000563343 THOC2Q8NI27 1593 aaKnown RBP16.09■□□□□ 0.17
HERPUD1-206ENST00000563343 NESP48681 1621 aa16.08■□□□□ 0.17
HERPUD1-206ENST00000563343 ATAD2BQ9ULI0 1458 aa16.07■□□□□ 0.16
HERPUD1-206ENST00000563343 HMGXB3Q12766 1538 aa16.05■□□□□ 0.16
HERPUD1-206ENST00000563343 SMARCA2P51531 1590 aa16■□□□□ 0.15
HERPUD1-206ENST00000563343 SMARCA4P51532 1647 aa15.98■□□□□ 0.15
HERPUD1-206ENST00000563343 KIF21AQ7Z4S6 1674 aa15.95■□□□□ 0.14
HERPUD1-206ENST00000563343 LAMC3Q9Y6N6 1575 aa15.92■□□□□ 0.14
HERPUD1-206ENST00000563343 TRIM41Q8WV44 630 aa15.89■□□□□ 0.13
HERPUD1-206ENST00000563343 PEG3Q9GZU2 1588 aa15.86■□□□□ 0.13
HERPUD1-206ENST00000563343 BAZ1BQ9UIG0 1483 aaKnown RBP15.84■□□□□ 0.13
HERPUD1-206ENST00000563343 BAZ1AQ9NRL2 1556 aaPredicted RBP15.79■□□□□ 0.12
HERPUD1-206ENST00000563343 PDS5BQ9NTI5 1447 aa15.75■□□□□ 0.11
HERPUD1-206ENST00000563343 WDR62O43379 1518 aa15.73■□□□□ 0.11
HERPUD1-206ENST00000563343 MRC2Q9UBG0 1479 aa15.69■□□□□ 0.1
HERPUD1-206ENST00000563343 MROH2BQ7Z745 1585 aa15.66■□□□□ 0.1
HERPUD1-206ENST00000563343 CADPSQ9ULU8 1353 aa15.62■□□□□ 0.09
HERPUD1-206ENST00000563343 CEP164Q9UPV0 1460 aa15.52■□□□□ 0.08
HERPUD1-206ENST00000563343 RIMBP3CA6NJZ7 1639 aa15.52■□□□□ 0.08
HERPUD1-206ENST00000563343 RIMBP3BA6NNM3 1639 aa15.52■□□□□ 0.08
HERPUD1-206ENST00000563343 RIMBP3Q9UFD9 1639 aa15.52■□□□□ 0.08
HERPUD1-206ENST00000563343 OSCARQ8IYS5 282 aa15.51■□□□□ 0.07
HERPUD1-206ENST00000563343 WIZO95785 1651 aa15.49■□□□□ 0.07
HERPUD1-206ENST00000563343 FANCD2Q9BXW9 1451 aa15.46■□□□□ 0.07
HERPUD1-206ENST00000563343 URB2Q14146 1524 aaKnown RBP15.42■□□□□ 0.06
HERPUD1-206ENST00000563343 CFTRP13569 1480 aa15.4■□□□□ 0.06
HERPUD1-206ENST00000563343 ARHGEF11O15085 1522 aa15.38■□□□□ 0.05
HERPUD1-206ENST00000563343 PRDM2Q13029 1718 aa15.35■□□□□ 0.05
HERPUD1-206ENST00000563343 PHF23Q9BUL5 403 aaPredicted RBP15.35■□□□□ 0.05
HERPUD1-206ENST00000563343 SENP3Q9H4L4 574 aaPredicted RBP15.33■□□□□ 0.04
HERPUD1-206ENST00000563343 ZNF608Q9ULD9 1512 aaPredicted RBP15.28■□□□□ 0.04
HERPUD1-206ENST00000563343 CHD1O14646 1710 aa15.24■□□□□ 0.03
HERPUD1-206ENST00000563343 IFT140Q96RY7 1462 aa15.23■□□□□ 0.03
HERPUD1-206ENST00000563343 TOP2AP11388 1531 aaKnown RBP15.22■□□□□ 0.03
HERPUD1-206ENST00000563343 EIF4G3O43432 1585 aaKnown RBP15.22■□□□□ 0.03
HERPUD1-206ENST00000563343 ARAP1Q96P48 1450 aa15.2■□□□□ 0.02
HERPUD1-206ENST00000563343 CYB5RLQ6IPT4 315 aa15.18■□□□□ 0.02
HERPUD1-206ENST00000563343 TOPBP1Q92547 1522 aa15.15■□□□□ 0.02
HERPUD1-206ENST00000563343 RSF1Q96T23 1441 aaPredicted RBP15.13■□□□□ 0.01
HERPUD1-206ENST00000563343 TARBP1Q13395 1621 aaKnown RBP15.12■□□□□ 0.01
HERPUD1-206ENST00000563343 TRHP20396 242 aaPredicted RBP15.11■□□□□ 0.01
HERPUD1-206ENST00000563343 DNMBPQ6XZF7 1577 aa15.07■□□□□ 0
HERPUD1-206ENST00000563343 ABCC8Q09428 1581 aa15.05■□□□□ -0
HERPUD1-206ENST00000563343 AQRO60306 1485 aaKnown RBP eCLIP15.04■□□□□ -06e-8■■■■■ 39.9
HERPUD1-206ENST00000563343 CCDC88BA6NC98 1476 aa15.02■□□□□ -0
HERPUD1-206ENST00000563343 CLASP1Q7Z460 1538 aa15.02□□□□□ -0.01
HERPUD1-206ENST00000563343 POLA1P09884 1462 aaPredicted RBP14.96□□□□□ -0.01
HERPUD1-206ENST00000563343 FBLN2P98095 1184 aa14.92□□□□□ -0.02
HERPUD1-206ENST00000563343 WDR97A6NE52 1622 aa14.91□□□□□ -0.02
HERPUD1-206ENST00000563343 SYNJ1O43426 1573 aa14.9□□□□□ -0.02
HERPUD1-206ENST00000563343 SNAPC4Q5SXM2 1469 aa14.9□□□□□ -0.02
HERPUD1-206ENST00000563343 RAD54L2Q9Y4B4 1467 aa14.89□□□□□ -0.03
HERPUD1-206ENST00000563343 TDRD9Q8NDG6 1382 aaKnown RBP14.85□□□□□ -0.03
HERPUD1-206ENST00000563343 MAGI1Q96QZ7 1491 aaPredicted RBP14.84□□□□□ -0.03
HERPUD1-206ENST00000563343 SOGA1O94964 1423 aa14.83□□□□□ -0.04
HERPUD1-206ENST00000563343 PBRM1Q86U86 1689 aa14.81□□□□□ -0.04
HERPUD1-206ENST00000563343 GAPVD1Q14C86 1478 aa14.8□□□□□ -0.04
HERPUD1-206ENST00000563343 FGD5Q6ZNL6 1462 aa14.8□□□□□ -0.04
HERPUD1-206ENST00000563343 SYNJ2O15056 1496 aa14.79□□□□□ -0.04
HERPUD1-206ENST00000563343 GRIN2BQ13224 1484 aa14.78□□□□□ -0.04
HERPUD1-206ENST00000563343 KIF13AQ9H1H9 1805 aa14.76□□□□□ -0.05
HERPUD1-206ENST00000563343 CHMP7Q8WUX9 453 aaPredicted RBP14.76□□□□□ -0.05
HERPUD1-206ENST00000563343 ERCC6L2Q5T890 1561 aa14.75□□□□□ -0.05
HERPUD1-206ENST00000563343 CUX1P39880 1505 aa14.74□□□□□ -0.05
HERPUD1-206ENST00000563343 ABCA5Q8WWZ7 1642 aa14.7□□□□□ -0.06
HERPUD1-206ENST00000563343 SHROOM2Q13796 1616 aa14.66□□□□□ -0.06
HERPUD1-206ENST00000563343 CEP170Q5SW79 1584 aa14.65□□□□□ -0.06
HERPUD1-206ENST00000563343 ABCA10Q8WWZ4 1543 aa14.61□□□□□ -0.07
HERPUD1-206ENST00000563343 GRIN2AQ12879 1464 aa14.61□□□□□ -0.07
HERPUD1-206ENST00000563343 ADAMTS12P58397 1594 aa14.6□□□□□ -0.07
HERPUD1-206ENST00000563343 NUP160Q12769 1436 aa14.59□□□□□ -0.07
HERPUD1-206ENST00000563343 DIP2BQ9P265 1576 aa14.5□□□□□ -0.09
HERPUD1-206ENST00000563343 ABCC10Q5T3U5 1492 aa14.5□□□□□ -0.09
HERPUD1-206ENST00000563343 KDM4FA0A1W2PPD8 638 aa14.48□□□□□ -0.09
HERPUD1-206ENST00000563343 MAPKBP1O60336 1514 aa14.47□□□□□ -0.09
HERPUD1-206ENST00000563343 ILDR1Q86SU0 546 aaPredicted RBP14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms