RNA–Protein interactions for RNA: ENST00000557597.5

NUMB-229, Transcript of NUMB, endocytic adaptor protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NUMB, Length 3,547 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUMB-229ENST00000557597 NISCHQ9Y2I1 1504 aa15.27■□□□□ 0.04
NUMB-229ENST00000557597 CCDC180Q9P1Z9 1646 aa13.96□□□□□ -0.17
NUMB-229ENST00000557597 ABCC9O60706 1549 aa13.76□□□□□ -0.21
NUMB-229ENST00000557597 RB1CC1Q8TDY2 1594 aa13.28□□□□□ -0.28
NUMB-229ENST00000557597 NACADO15069 1562 aa13.18□□□□□ -0.3
NUMB-229ENST00000557597 MYO15BQ96JP2 1530 aa13.05□□□□□ -0.32
NUMB-229ENST00000557597 DNAJC5BQ9UF47 199 aa12.91□□□□□ -0.34
NUMB-229ENST00000557597 SHROOM4Q9ULL8 1493 aa12.9□□□□□ -0.34
NUMB-229ENST00000557597 UNC13AQ9UPW8 1703 aa12.88□□□□□ -0.35
NUMB-229ENST00000557597 DCAF1Q9Y4B6 1507 aa12.79□□□□□ -0.36
NUMB-229ENST00000557597 BICRAQ9NZM4 1560 aa12.78□□□□□ -0.36
NUMB-229ENST00000557597 PABPN1Q86U42 306 aaKnown RBP eCLIP12.66□□□□□ -0.38
NUMB-229ENST00000557597 ZCCHC6Q5VYS8 1495 aaKnown RBP12.65□□□□□ -0.38
NUMB-229ENST00000557597 DCAF8L2P0C7V8 631 aa12.61□□□□□ -0.39
NUMB-229ENST00000557597 CC2D2AQ9P2K1 1620 aa12.54□□□□□ -0.4
NUMB-229ENST00000557597 CECR2Q9BXF3 1484 aa12.51□□□□□ -0.41
NUMB-229ENST00000557597 EIF4G1Q04637 1599 aaKnown RBP12.5□□□□□ -0.41
NUMB-229ENST00000557597 SCRIBQ14160 1630 aa12.44□□□□□ -0.42
NUMB-229ENST00000557597 CUX2O14529 1486 aa12.18□□□□□ -0.46
NUMB-229ENST00000557597 DNAJC5Q9H3Z4 198 aa12.16□□□□□ -0.46
NUMB-229ENST00000557597 NCAPD3P42695 1498 aa12.1□□□□□ -0.47
NUMB-229ENST00000557597 HMGXB3Q12766 1538 aa12.06□□□□□ -0.48
NUMB-229ENST00000557597 SMARCA2P51531 1590 aa12.05□□□□□ -0.48
NUMB-229ENST00000557597 ERCC6Q03468 1493 aa11.98□□□□□ -0.49
NUMB-229ENST00000557597 ATAD2BQ9ULI0 1458 aa11.97□□□□□ -0.49
NUMB-229ENST00000557597 SMARCA4P51532 1647 aa11.96□□□□□ -0.49
NUMB-229ENST00000557597 PEG3Q9GZU2 1588 aa11.95□□□□□ -0.5
NUMB-229ENST00000557597 BAZ1AQ9NRL2 1556 aaPredicted RBP11.92□□□□□ -0.5
NUMB-229ENST00000557597 LAMC3Q9Y6N6 1575 aa11.9□□□□□ -0.5
NUMB-229ENST00000557597 BAZ1BQ9UIG0 1483 aaKnown RBP11.86□□□□□ -0.51
NUMB-229ENST00000557597 THOC2Q8NI27 1593 aaKnown RBP11.85□□□□□ -0.51
NUMB-229ENST00000557597 PDS5BQ9NTI5 1447 aa11.79□□□□□ -0.52
NUMB-229ENST00000557597 NESP48681 1621 aa11.74□□□□□ -0.53
NUMB-229ENST00000557597 KIF21AQ7Z4S6 1674 aa11.72□□□□□ -0.53
NUMB-229ENST00000557597 WDR62O43379 1518 aa11.69□□□□□ -0.54
NUMB-229ENST00000557597 MRC2Q9UBG0 1479 aa11.69□□□□□ -0.54
NUMB-229ENST00000557597 MROH2BQ7Z745 1585 aa11.67□□□□□ -0.54
NUMB-229ENST00000557597 CADPSQ9ULU8 1353 aa11.67□□□□□ -0.54
NUMB-229ENST00000557597 CEP164Q9UPV0 1460 aa11.59□□□□□ -0.55
NUMB-229ENST00000557597 PRDM2Q13029 1718 aa11.55□□□□□ -0.56
NUMB-229ENST00000557597 CFTRP13569 1480 aa11.52□□□□□ -0.56
NUMB-229ENST00000557597 WIZO95785 1651 aa11.52□□□□□ -0.57
NUMB-229ENST00000557597 FANCD2Q9BXW9 1451 aa11.52□□□□□ -0.57
NUMB-229ENST00000557597 HRCP23327 699 aa11.51□□□□□ -0.57
NUMB-229ENST00000557597 TOP2AP11388 1531 aaKnown RBP11.5□□□□□ -0.57
NUMB-229ENST00000557597 ABCC8Q09428 1581 aa11.43□□□□□ -0.58
NUMB-229ENST00000557597 OSCARQ8IYS5 282 aa11.42□□□□□ -0.58
NUMB-229ENST00000557597 IFT140Q96RY7 1462 aa11.41□□□□□ -0.58
NUMB-229ENST00000557597 URB2Q14146 1524 aaKnown RBP11.4□□□□□ -0.58
NUMB-229ENST00000557597 PPARGC1BQ86YN6 1023 aaKnown RBP11.4□□□□□ -0.58
NUMB-229ENST00000557597 TRIM41Q8WV44 630 aa11.39□□□□□ -0.59
NUMB-229ENST00000557597 RSF1Q96T23 1441 aaPredicted RBP11.38□□□□□ -0.59
NUMB-229ENST00000557597 WDR97A6NE52 1622 aa11.34□□□□□ -0.59
NUMB-229ENST00000557597 PCGF6Q9BYE7 350 aa11.34□□□□□ -0.59
NUMB-229ENST00000557597 RIMBP3CA6NJZ7 1639 aa11.33□□□□□ -0.6
NUMB-229ENST00000557597 RIMBP3BA6NNM3 1639 aa11.33□□□□□ -0.6
NUMB-229ENST00000557597 RIMBP3Q9UFD9 1639 aa11.33□□□□□ -0.6
NUMB-229ENST00000557597 DNMBPQ6XZF7 1577 aa11.31□□□□□ -0.6
NUMB-229ENST00000557597 PELP1Q8IZL8 1130 aaKnown RBP11.31□□□□□ -0.6
NUMB-229ENST00000557597 TOPBP1Q92547 1522 aa11.29□□□□□ -0.6
NUMB-229ENST00000557597 EIF4G3O43432 1585 aaKnown RBP11.27□□□□□ -0.61
NUMB-229ENST00000557597 ARHGEF11O15085 1522 aa11.26□□□□□ -0.61
NUMB-229ENST00000557597 CCDC88BA6NC98 1476 aa11.25□□□□□ -0.61
NUMB-229ENST00000557597 SUPT5HO00267 1087 aaKnown RBP11.25□□□□□ -0.61
NUMB-229ENST00000557597 TARBP1Q13395 1621 aaKnown RBP11.23□□□□□ -0.61
NUMB-229ENST00000557597 ZNF608Q9ULD9 1512 aaPredicted RBP11.21□□□□□ -0.61
NUMB-229ENST00000557597 CHD1O14646 1710 aa11.21□□□□□ -0.61
NUMB-229ENST00000557597 SYNJ1O43426 1573 aa11.14□□□□□ -0.63
NUMB-229ENST00000557597 MAGI1Q96QZ7 1491 aaPredicted RBP11.14□□□□□ -0.63
NUMB-229ENST00000557597 POLA1P09884 1462 aaPredicted RBP11.14□□□□□ -0.63
NUMB-229ENST00000557597 CLASP1Q7Z460 1538 aa11.13□□□□□ -0.63
NUMB-229ENST00000557597 ARAP1Q96P48 1450 aa11.12□□□□□ -0.63
NUMB-229ENST00000557597 SOGA1O94964 1423 aa11.08□□□□□ -0.64
NUMB-229ENST00000557597 AQRO60306 1485 aaKnown RBP eCLIP11.08□□□□□ -0.641e-6■■■□□ 18.1
NUMB-229ENST00000557597 GRIN2BQ13224 1484 aa11.08□□□□□ -0.64
NUMB-229ENST00000557597 SYNJ2O15056 1496 aa11.06□□□□□ -0.64
NUMB-229ENST00000557597 SNAPC4Q5SXM2 1469 aa11.05□□□□□ -0.64
NUMB-229ENST00000557597 PBRM1Q86U86 1689 aa11.04□□□□□ -0.64
NUMB-229ENST00000557597 FGD5Q6ZNL6 1462 aa11.04□□□□□ -0.64
NUMB-229ENST00000557597 CYB5RLQ6IPT4 315 aa11.02□□□□□ -0.64
NUMB-229ENST00000557597 SCAF1Q9H7N4 1312 aaKnown RBP11.02□□□□□ -0.65
NUMB-229ENST00000557597 RAD54L2Q9Y4B4 1467 aa11□□□□□ -0.65
NUMB-229ENST00000557597 CUX1P39880 1505 aa11□□□□□ -0.65
NUMB-229ENST00000557597 ABCA5Q8WWZ7 1642 aa11□□□□□ -0.65
NUMB-229ENST00000557597 ABCA10Q8WWZ4 1543 aa10.99□□□□□ -0.65
NUMB-229ENST00000557597 CHMP7Q8WUX9 453 aaPredicted RBP10.97□□□□□ -0.65
NUMB-229ENST00000557597 GAPVD1Q14C86 1478 aa10.97□□□□□ -0.65
NUMB-229ENST00000557597 TDRD9Q8NDG6 1382 aaKnown RBP10.96□□□□□ -0.65
NUMB-229ENST00000557597 TRHP20396 242 aaPredicted RBP10.96□□□□□ -0.65
NUMB-229ENST00000557597 FBLN2P98095 1184 aa10.95□□□□□ -0.66
NUMB-229ENST00000557597 CHIC1Q5VXU3 224 aa10.95□□□□□ -0.66
NUMB-229ENST00000557597 SHROOM2Q13796 1616 aa10.93□□□□□ -0.66
NUMB-229ENST00000557597 ADAMTS12P58397 1594 aa10.92□□□□□ -0.66
NUMB-229ENST00000557597 BIVM-ERCC5R4GMW8 1640 aa10.91□□□□□ -0.66
NUMB-229ENST00000557597 NUP160Q12769 1436 aa10.91□□□□□ -0.66
NUMB-229ENST00000557597 GRIN2AQ12879 1464 aa10.9□□□□□ -0.66
NUMB-229ENST00000557597 ERICH3Q5RHP9 1530 aa10.89□□□□□ -0.67
NUMB-229ENST00000557597 MYT1Q01538 1121 aa10.89□□□□□ -0.67
NUMB-229ENST00000557597 WRNQ14191 1432 aaPredicted RBP eCLIP10.88□□□□□ -0.67
NUMB-229ENST00000557597 FHAD1B1AJZ9 1412 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms