RNA–Protein interactions for RNA: ENST00000557037.5

PSEN1-220, Transcript of presenilin 1, humanhuman

TSL 4

Gene PSEN1, Length 555 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-220ENST00000557037 NISCHQ9Y2I1 1504 aa32.54■■■□□ 2.8
PSEN1-220ENST00000557037 ABCC9O60706 1549 aa30.65■■■□□ 2.5
PSEN1-220ENST00000557037 DNAJC5BQ9UF47 199 aa29.66■■■□□ 2.34
PSEN1-220ENST00000557037 CCDC180Q9P1Z9 1646 aa29.53■■■□□ 2.32
PSEN1-220ENST00000557037 RB1CC1Q8TDY2 1594 aa28.62■■■□□ 2.17
PSEN1-220ENST00000557037 PABPN1Q86U42 306 aaKnown RBP eCLIP28.45■■■□□ 2.14
PSEN1-220ENST00000557037 NACADO15069 1562 aa28.18■■■□□ 2.1
PSEN1-220ENST00000557037 DCAF8L2P0C7V8 631 aa28.08■■■□□ 2.09
PSEN1-220ENST00000557037 UNC13AQ9UPW8 1703 aa27.99■■■□□ 2.07
PSEN1-220ENST00000557037 BICRAQ9NZM4 1560 aa27.87■■■□□ 2.05
PSEN1-220ENST00000557037 DNAJC5Q9H3Z4 198 aa27.86■■■□□ 2.05
PSEN1-220ENST00000557037 CECR2Q9BXF3 1484 aa27.67■■■□□ 2.02
PSEN1-220ENST00000557037 CC2D2AQ9P2K1 1620 aa27.57■■■□□ 2
PSEN1-220ENST00000557037 MYO15BQ96JP2 1530 aa27.41■■□□□ 1.98
PSEN1-220ENST00000557037 SHROOM4Q9ULL8 1493 aa27.26■■□□□ 1.95
PSEN1-220ENST00000557037 EIF4G1Q04637 1599 aaKnown RBP27.26■■□□□ 1.95
PSEN1-220ENST00000557037 SCRIBQ14160 1630 aa26.99■■□□□ 1.91
PSEN1-220ENST00000557037 ZCCHC6Q5VYS8 1495 aaKnown RBP26.74■■□□□ 1.87
PSEN1-220ENST00000557037 DCAF1Q9Y4B6 1507 aa26.73■■□□□ 1.87
PSEN1-220ENST00000557037 CUX2O14529 1486 aa26.69■■□□□ 1.86
PSEN1-220ENST00000557037 ERCC6Q03468 1493 aa26.5■■□□□ 1.83
PSEN1-220ENST00000557037 TRIM41Q8WV44 630 aa26.35■■□□□ 1.81
PSEN1-220ENST00000557037 NCAPD3P42695 1498 aa26.06■■□□□ 1.76
PSEN1-220ENST00000557037 NESP48681 1621 aa26.06■■□□□ 1.76
PSEN1-220ENST00000557037 THOC2Q8NI27 1593 aaKnown RBP25.89■■□□□ 1.73
PSEN1-220ENST00000557037 ATAD2BQ9ULI0 1458 aa25.87■■□□□ 1.73
PSEN1-220ENST00000557037 SMARCA2P51531 1590 aa25.76■■□□□ 1.71
PSEN1-220ENST00000557037 HMGXB3Q12766 1538 aa25.74■■□□□ 1.71
PSEN1-220ENST00000557037 KIF21AQ7Z4S6 1674 aa25.62■■□□□ 1.69
PSEN1-220ENST00000557037 LAMC3Q9Y6N6 1575 aa25.59■■□□□ 1.69
PSEN1-220ENST00000557037 SMARCA4P51532 1647 aa25.59■■□□□ 1.69
PSEN1-220ENST00000557037 BAZ1BQ9UIG0 1483 aaKnown RBP25.58■■□□□ 1.69
PSEN1-220ENST00000557037 PDS5BQ9NTI5 1447 aa25.53■■□□□ 1.68
PSEN1-220ENST00000557037 BAZ1AQ9NRL2 1556 aaPredicted RBP25.43■■□□□ 1.66
PSEN1-220ENST00000557037 OSCARQ8IYS5 282 aa25.4■■□□□ 1.66
PSEN1-220ENST00000557037 MRC2Q9UBG0 1479 aa25.38■■□□□ 1.65
PSEN1-220ENST00000557037 WDR62O43379 1518 aa25.32■■□□□ 1.64
PSEN1-220ENST00000557037 PEG3Q9GZU2 1588 aa25.27■■□□□ 1.64
PSEN1-220ENST00000557037 CADPSQ9ULU8 1353 aa25.25■■□□□ 1.63
PSEN1-220ENST00000557037 RIMBP3CA6NJZ7 1639 aa25.15■■□□□ 1.62
PSEN1-220ENST00000557037 RIMBP3BA6NNM3 1639 aa25.15■■□□□ 1.62
PSEN1-220ENST00000557037 RIMBP3Q9UFD9 1639 aa25.15■■□□□ 1.62
PSEN1-220ENST00000557037 MROH2BQ7Z745 1585 aa25.11■■□□□ 1.61
PSEN1-220ENST00000557037 CEP164Q9UPV0 1460 aa25.08■■□□□ 1.6
PSEN1-220ENST00000557037 TRHP20396 242 aaPredicted RBP24.99■■□□□ 1.59
PSEN1-220ENST00000557037 FANCD2Q9BXW9 1451 aa24.98■■□□□ 1.59
PSEN1-220ENST00000557037 ARHGEF11O15085 1522 aa24.96■■□□□ 1.59
PSEN1-220ENST00000557037 AEBP2Q6ZN18 517 aaPredicted RBP24.95■■□□□ 1.58
PSEN1-220ENST00000557037 CYB5RLQ6IPT4 315 aa24.94■■□□□ 1.58
PSEN1-220ENST00000557037 URB2Q14146 1524 aaKnown RBP24.85■■□□□ 1.57
PSEN1-220ENST00000557037 WIZO95785 1651 aa24.76■■□□□ 1.55
PSEN1-220ENST00000557037 CFTRP13569 1480 aa24.74■■□□□ 1.55
PSEN1-220ENST00000557037 ZNF608Q9ULD9 1512 aaPredicted RBP24.73■■□□□ 1.55
PSEN1-220ENST00000557037 ARAP1Q96P48 1450 aa24.68■■□□□ 1.54
PSEN1-220ENST00000557037 IFT140Q96RY7 1462 aa24.6■■□□□ 1.53
PSEN1-220ENST00000557037 CHD1O14646 1710 aa24.49■■□□□ 1.51
PSEN1-220ENST00000557037 FBLN2P98095 1184 aa24.49■■□□□ 1.51
PSEN1-220ENST00000557037 EIF4G3O43432 1585 aaKnown RBP24.47■■□□□ 1.51
PSEN1-220ENST00000557037 RSF1Q96T23 1441 aaPredicted RBP24.44■■□□□ 1.5
PSEN1-220ENST00000557037 AQRO60306 1485 aaKnown RBP eCLIP24.4■■□□□ 1.5
PSEN1-220ENST00000557037 TOPBP1Q92547 1522 aa24.4■■□□□ 1.5
PSEN1-220ENST00000557037 PRDM2Q13029 1718 aa24.34■■□□□ 1.49
PSEN1-220ENST00000557037 TOP2AP11388 1531 aaKnown RBP24.33■■□□□ 1.49
PSEN1-220ENST00000557037 TARBP1Q13395 1621 aaKnown RBP24.22■■□□□ 1.47
PSEN1-220ENST00000557037 ABCC8Q09428 1581 aa24.2■■□□□ 1.47
PSEN1-220ENST00000557037 DNMBPQ6XZF7 1577 aa24.19■■□□□ 1.46
PSEN1-220ENST00000557037 CLASP1Q7Z460 1538 aa24.16■■□□□ 1.46
PSEN1-220ENST00000557037 CCDC88BA6NC98 1476 aa24.13■■□□□ 1.45
PSEN1-220ENST00000557037 TDRD9Q8NDG6 1382 aaKnown RBP24.11■■□□□ 1.45
PSEN1-220ENST00000557037 CHMP7Q8WUX9 453 aaPredicted RBP24.09■■□□□ 1.45
PSEN1-220ENST00000557037 POLA1P09884 1462 aaPredicted RBP24.08■■□□□ 1.45
PSEN1-220ENST00000557037 SNAPC4Q5SXM2 1469 aa24.08■■□□□ 1.45
PSEN1-220ENST00000557037 RAD54L2Q9Y4B4 1467 aa24.08■■□□□ 1.45
PSEN1-220ENST00000557037 SYNJ1O43426 1573 aa24.06■■□□□ 1.44
PSEN1-220ENST00000557037 GAPVD1Q14C86 1478 aa24.03■■□□□ 1.44
PSEN1-220ENST00000557037 ILDR1Q86SU0 546 aaPredicted RBP24.02■■□□□ 1.44
PSEN1-220ENST00000557037 SOGA1O94964 1423 aa23.99■■□□□ 1.43
PSEN1-220ENST00000557037 MAGI1Q96QZ7 1491 aaPredicted RBP23.92■■□□□ 1.42
PSEN1-220ENST00000557037 SYNJ2O15056 1496 aa23.87■■□□□ 1.41
PSEN1-220ENST00000557037 GRIN2BQ13224 1484 aa23.85■■□□□ 1.41
PSEN1-220ENST00000557037 FGD5Q6ZNL6 1462 aa23.81■■□□□ 1.4
PSEN1-220ENST00000557037 ERCC6L2Q5T890 1561 aa23.81■■□□□ 1.4
PSEN1-220ENST00000557037 WDR97A6NE52 1622 aa23.81■■□□□ 1.4
PSEN1-220ENST00000557037 KDM4FA0A1W2PPD8 638 aa23.72■■□□□ 1.39
PSEN1-220ENST00000557037 KIF13AQ9H1H9 1805 aa23.72■■□□□ 1.39
PSEN1-220ENST00000557037 PBRM1Q86U86 1689 aa23.67■■□□□ 1.38
PSEN1-220ENST00000557037 CUX1P39880 1505 aa23.64■■□□□ 1.38
PSEN1-220ENST00000557037 CEP170Q5SW79 1584 aa23.62■■□□□ 1.37
PSEN1-220ENST00000557037 FAM69CQ0P6D2 419 aa23.59■■□□□ 1.37
PSEN1-220ENST00000557037 GRIN2AQ12879 1464 aa23.55■■□□□ 1.36
PSEN1-220ENST00000557037 NUP160Q12769 1436 aa23.49■■□□□ 1.35
PSEN1-220ENST00000557037 ABCA5Q8WWZ7 1642 aa23.48■■□□□ 1.35
PSEN1-220ENST00000557037 ABCC10Q5T3U5 1492 aa23.48■■□□□ 1.35
PSEN1-220ENST00000557037 SHROOM2Q13796 1616 aa23.47■■□□□ 1.35
PSEN1-220ENST00000557037 KDM6BO15054 1643 aa23.44■■□□□ 1.34
PSEN1-220ENST00000557037 ABCA10Q8WWZ4 1543 aa23.44■■□□□ 1.34
PSEN1-220ENST00000557037 PRG4Q92954 1404 aaPredicted RBP23.41■■□□□ 1.34
PSEN1-220ENST00000557037 ADAMTS12P58397 1594 aa23.4■■□□□ 1.34
PSEN1-220ENST00000557037 NPM1P06748 294 aaKnown RBP eCLIP23.4■■□□□ 1.34
PSEN1-220ENST00000557037 DIP2BQ9P265 1576 aa23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms