RNA–Protein interactions for RNA: ENST00000552931.1

SMARCC2-215, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2, human

TSL 3

Gene SMARCC2, Length 608 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCC2-215	ENST00000552931	NISCH	Q9Y2I1	1504 aa		15.17	■□□□□ 0.02
SMARCC2-215	ENST00000552931	CCDC180	Q9P1Z9	1646 aa		13.57	□□□□□ -0.24
SMARCC2-215	ENST00000552931	ABCC9	O60706	1549 aa		13.29	□□□□□ -0.28
SMARCC2-215	ENST00000552931	CHIC1	Q5VXU3	224 aa		13.05	□□□□□ -0.32
SMARCC2-215	ENST00000552931	MYO15B	Q96JP2	1530 aa		12.85	□□□□□ -0.35
SMARCC2-215	ENST00000552931	NACAD	O15069	1562 aa		12.84	□□□□□ -0.35
SMARCC2-215	ENST00000552931	RB1CC1	Q8TDY2	1594 aa		12.83	□□□□□ -0.36
SMARCC2-215	ENST00000552931	DNAJC5B	Q9UF47	199 aa		12.78	□□□□□ -0.36
SMARCC2-215	ENST00000552931	DCAF1	Q9Y4B6	1507 aa		12.68	□□□□□ -0.38
SMARCC2-215	ENST00000552931	ZCCHC6	Q5VYS8	1495 aa	Known RBP	12.6	□□□□□ -0.39
SMARCC2-215	ENST00000552931	AEBP2	Q6ZN18	517 aa	Predicted RBP	12.52	□□□□□ -0.41
SMARCC2-215	ENST00000552931	DCAF8L2	P0C7V8	631 aa		12.49	□□□□□ -0.41
SMARCC2-215	ENST00000552931	SHROOM4	Q9ULL8	1493 aa		12.48	□□□□□ -0.41
SMARCC2-215	ENST00000552931	UNC13A	Q9UPW8	1703 aa		12.45	□□□□□ -0.42
SMARCC2-215	ENST00000552931	BICRA	Q9NZM4	1560 aa		12.45	□□□□□ -0.42
SMARCC2-215	ENST00000552931	PABPN1	Q86U42	306 aa	Known RBP eCLIP	12.37	□□□□□ -0.43
SMARCC2-215	ENST00000552931	SCRIB	Q14160	1630 aa		12.19	□□□□□ -0.46
SMARCC2-215	ENST00000552931	EIF4G1	Q04637	1599 aa	Known RBP	12.12	□□□□□ -0.47
SMARCC2-215	ENST00000552931	DNAJC5	Q9H3Z4	198 aa		12.1	□□□□□ -0.47
SMARCC2-215	ENST00000552931	CC2D2A	Q9P2K1	1620 aa		12.08	□□□□□ -0.48
SMARCC2-215	ENST00000552931	CECR2	Q9BXF3	1484 aa		12.03	□□□□□ -0.48
SMARCC2-215	ENST00000552931	NCAPD3	P42695	1498 aa		11.89	□□□□□ -0.51
SMARCC2-215	ENST00000552931	ATAD2B	Q9ULI0	1458 aa		11.79	□□□□□ -0.52
SMARCC2-215	ENST00000552931	PEG3	Q9GZU2	1588 aa		11.79	□□□□□ -0.52
SMARCC2-215	ENST00000552931	SMARCA2	P51531	1590 aa		11.78	□□□□□ -0.52
SMARCC2-215	ENST00000552931	HMGXB3	Q12766	1538 aa		11.77	□□□□□ -0.52
SMARCC2-215	ENST00000552931	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	11.76	□□□□□ -0.53
SMARCC2-215	ENST00000552931	SMARCA4	P51532	1647 aa		11.76	□□□□□ -0.53
SMARCC2-215	ENST00000552931	CUX2	O14529	1486 aa		11.65	□□□□□ -0.54
SMARCC2-215	ENST00000552931	BAZ1B	Q9UIG0	1483 aa	Known RBP	11.62	□□□□□ -0.55
SMARCC2-215	ENST00000552931	MROH2B	Q7Z745	1585 aa		11.62	□□□□□ -0.55
SMARCC2-215	ENST00000552931	PHF23	Q9BUL5	403 aa	Predicted RBP	11.61	□□□□□ -0.55
SMARCC2-215	ENST00000552931	LAMC3	Q9Y6N6	1575 aa		11.54	□□□□□ -0.56
SMARCC2-215	ENST00000552931	ERCC6	Q03468	1493 aa		11.51	□□□□□ -0.57
SMARCC2-215	ENST00000552931	CADPS	Q9ULU8	1353 aa		11.48	□□□□□ -0.57
SMARCC2-215	ENST00000552931	RSF1	Q96T23	1441 aa	Predicted RBP	11.48	□□□□□ -0.57
SMARCC2-215	ENST00000552931	PDS5B	Q9NTI5	1447 aa		11.47	□□□□□ -0.57
SMARCC2-215	ENST00000552931	NES	P48681	1621 aa		11.46	□□□□□ -0.58
SMARCC2-215	ENST00000552931	WIZ	O95785	1651 aa		11.42	□□□□□ -0.58
SMARCC2-215	ENST00000552931	CFTR	P13569	1480 aa		11.39	□□□□□ -0.59
SMARCC2-215	ENST00000552931	THOC2	Q8NI27	1593 aa	Known RBP	11.39	□□□□□ -0.59
SMARCC2-215	ENST00000552931	TOP2A	P11388	1531 aa	Known RBP	11.38	□□□□□ -0.59
SMARCC2-215	ENST00000552931	TRIM41	Q8WV44	630 aa		11.36	□□□□□ -0.59
SMARCC2-215	ENST00000552931	MRC2	Q9UBG0	1479 aa		11.32	□□□□□ -0.6
SMARCC2-215	ENST00000552931	WDR62	O43379	1518 aa		11.31	□□□□□ -0.6
SMARCC2-215	ENST00000552931	KIF21A	Q7Z4S6	1674 aa		11.3	□□□□□ -0.6
SMARCC2-215	ENST00000552931	FANCD2	Q9BXW9	1451 aa		11.27	□□□□□ -0.6
SMARCC2-215	ENST00000552931	CEP164	Q9UPV0	1460 aa		11.27	□□□□□ -0.6
SMARCC2-215	ENST00000552931	CCDC88B	A6NC98	1476 aa		11.24	□□□□□ -0.61
SMARCC2-215	ENST00000552931	PRDM2	Q13029	1718 aa		11.19	□□□□□ -0.62
SMARCC2-215	ENST00000552931	ABCC8	Q09428	1581 aa		11.18	□□□□□ -0.62
SMARCC2-215	ENST00000552931	URB2	Q14146	1524 aa	Known RBP	11.17	□□□□□ -0.62
SMARCC2-215	ENST00000552931	IFT140	Q96RY7	1462 aa		11.1	□□□□□ -0.63
SMARCC2-215	ENST00000552931	TOPBP1	Q92547	1522 aa		11.09	□□□□□ -0.63
SMARCC2-215	ENST00000552931	OSCAR	Q8IYS5	282 aa		11.07	□□□□□ -0.64
SMARCC2-215	ENST00000552931	DNMBP	Q6XZF7	1577 aa		11.06	□□□□□ -0.64
SMARCC2-215	ENST00000552931	EHMT2	Q96KQ7	1210 aa		11.05	□□□□□ -0.64
SMARCC2-215	ENST00000552931	WDR97	A6NE52	1622 aa		11.01	□□□□□ -0.65
SMARCC2-215	ENST00000552931	TARBP1	Q13395	1621 aa	Known RBP	10.99	□□□□□ -0.65
SMARCC2-215	ENST00000552931	POLA1	P09884	1462 aa	Predicted RBP	10.98	□□□□□ -0.65
SMARCC2-215	ENST00000552931	PLPPR3	Q6T4P5	718 aa		10.97	□□□□□ -0.65
SMARCC2-215	ENST00000552931	ZNF608	Q9ULD9	1512 aa	Predicted RBP	10.97	□□□□□ -0.65
SMARCC2-215	ENST00000552931	SOGA1	O94964	1423 aa		10.92	□□□□□ -0.66
SMARCC2-215	ENST00000552931	EIF4G3	O43432	1585 aa	Known RBP	10.91	□□□□□ -0.66
SMARCC2-215	ENST00000552931	CUX1	P39880	1505 aa		10.91	□□□□□ -0.66
SMARCC2-215	ENST00000552931	RIMBP3C	A6NJZ7	1639 aa		10.91	□□□□□ -0.66
SMARCC2-215	ENST00000552931	RIMBP3B	A6NNM3	1639 aa		10.91	□□□□□ -0.66
SMARCC2-215	ENST00000552931	RIMBP3	Q9UFD9	1639 aa		10.91	□□□□□ -0.66
SMARCC2-215	ENST00000552931	AQR	O60306	1485 aa	Known RBP eCLIP	10.89	□□□□□ -0.67	2e-11	■■■■■ 33.1
SMARCC2-215	ENST00000552931	FGD5	Q6ZNL6	1462 aa		10.88	□□□□□ -0.67
SMARCC2-215	ENST00000552931	ABCA10	Q8WWZ4	1543 aa		10.87	□□□□□ -0.67
SMARCC2-215	ENST00000552931	MAGI1	Q96QZ7	1491 aa	Predicted RBP	10.87	□□□□□ -0.67
SMARCC2-215	ENST00000552931	RAD54L2	Q9Y4B4	1467 aa		10.87	□□□□□ -0.67
SMARCC2-215	ENST00000552931	GRIN2B	Q13224	1484 aa		10.84	□□□□□ -0.67
SMARCC2-215	ENST00000552931	ARHGEF11	O15085	1522 aa		10.84	□□□□□ -0.67
SMARCC2-215	ENST00000552931	TDRD9	Q8NDG6	1382 aa	Known RBP	10.83	□□□□□ -0.68
SMARCC2-215	ENST00000552931	SUPT5H	O00267	1087 aa	Known RBP	10.83	□□□□□ -0.68
SMARCC2-215	ENST00000552931	TRH	P20396	242 aa	Predicted RBP	10.83	□□□□□ -0.68
SMARCC2-215	ENST00000552931	WRN	Q14191	1432 aa	Predicted RBP eCLIP	10.82	□□□□□ -0.68
SMARCC2-215	ENST00000552931	CYB5RL	Q6IPT4	315 aa		10.81	□□□□□ -0.68
SMARCC2-215	ENST00000552931	GAPVD1	Q14C86	1478 aa		10.81	□□□□□ -0.68
SMARCC2-215	ENST00000552931	TOP2B	Q02880	1626 aa		10.8	□□□□□ -0.68
SMARCC2-215	ENST00000552931	SYNJ2	O15056	1496 aa		10.8	□□□□□ -0.68
SMARCC2-215	ENST00000552931	BIVM-ERCC5	R4GMW8	1640 aa		10.8	□□□□□ -0.68
SMARCC2-215	ENST00000552931	ABCA5	Q8WWZ7	1642 aa		10.78	□□□□□ -0.68
SMARCC2-215	ENST00000552931	SNAPC4	Q5SXM2	1469 aa		10.78	□□□□□ -0.68
SMARCC2-215	ENST00000552931	CLASP1	Q7Z460	1538 aa		10.78	□□□□□ -0.68
SMARCC2-215	ENST00000552931	CHD1	O14646	1710 aa		10.77	□□□□□ -0.69
SMARCC2-215	ENST00000552931	CHMP7	Q8WUX9	453 aa	Predicted RBP	10.75	□□□□□ -0.69
SMARCC2-215	ENST00000552931	SYNJ1	O43426	1573 aa		10.74	□□□□□ -0.69
SMARCC2-215	ENST00000552931	ERICH3	Q5RHP9	1530 aa		10.74	□□□□□ -0.69
SMARCC2-215	ENST00000552931	NUP160	Q12769	1436 aa		10.72	□□□□□ -0.69
SMARCC2-215	ENST00000552931	FHAD1	B1AJZ9	1412 aa		10.71	□□□□□ -0.69
SMARCC2-215	ENST00000552931	PBRM1	Q86U86	1689 aa		10.7	□□□□□ -0.7
SMARCC2-215	ENST00000552931	ARAP1	Q96P48	1450 aa		10.7	□□□□□ -0.7
SMARCC2-215	ENST00000552931	FBLN2	P98095	1184 aa		10.69	□□□□□ -0.7
SMARCC2-215	ENST00000552931	GRIN2A	Q12879	1464 aa		10.68	□□□□□ -0.7
SMARCC2-215	ENST00000552931	SLC24A1	O60721	1099 aa		10.68	□□□□□ -0.7
SMARCC2-215	ENST00000552931	ADAMTS12	P58397	1594 aa		10.66	□□□□□ -0.7
SMARCC2-215	ENST00000552931	KCNA4	P22459	653 aa		10.63	□□□□□ -0.71

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