RNA–Protein interactions for RNA: ENST00000552713.5

CDK4-213, Transcript of cyclin dependent kinase 4, humanhuman

TSL 2

Gene CDK4, Length 685 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK4-213ENST00000552713 NISCHQ9Y2I1 1504 aa21.84■■□□□ 1.09
CDK4-213ENST00000552713 AEBP2Q6ZN18 517 aaPredicted RBP20.85■□□□□ 0.93
CDK4-213ENST00000552713 ABCC9O60706 1549 aa20.05■□□□□ 0.8
CDK4-213ENST00000552713 CCDC180Q9P1Z9 1646 aa19.74■□□□□ 0.75
CDK4-213ENST00000552713 CHIC1Q5VXU3 224 aa19.29■□□□□ 0.68
CDK4-213ENST00000552713 DNAJC5BQ9UF47 199 aa19.13■□□□□ 0.65
CDK4-213ENST00000552713 RB1CC1Q8TDY2 1594 aa18.9■□□□□ 0.62
CDK4-213ENST00000552713 NACADO15069 1562 aa18.69■□□□□ 0.58
CDK4-213ENST00000552713 UNC13AQ9UPW8 1703 aa18.65■□□□□ 0.58
CDK4-213ENST00000552713 PABPN1Q86U42 306 aaKnown RBP eCLIP18.62■□□□□ 0.57
CDK4-213ENST00000552713 DCAF8L2P0C7V8 631 aa18.55■□□□□ 0.56
CDK4-213ENST00000552713 BICRAQ9NZM4 1560 aa18.46■□□□□ 0.55
CDK4-213ENST00000552713 MYO15BQ96JP2 1530 aa18.3■□□□□ 0.52
CDK4-213ENST00000552713 CC2D2AQ9P2K1 1620 aa18.12■□□□□ 0.49
CDK4-213ENST00000552713 CECR2Q9BXF3 1484 aa18.06■□□□□ 0.48
CDK4-213ENST00000552713 ZCCHC6Q5VYS8 1495 aaKnown RBP18.04■□□□□ 0.48
CDK4-213ENST00000552713 SHROOM4Q9ULL8 1493 aa18.01■□□□□ 0.47
CDK4-213ENST00000552713 SCRIBQ14160 1630 aa18.01■□□□□ 0.47
CDK4-213ENST00000552713 DCAF1Q9Y4B6 1507 aa17.98■□□□□ 0.47
CDK4-213ENST00000552713 EIF4G1Q04637 1599 aaKnown RBP17.97■□□□□ 0.47
CDK4-213ENST00000552713 DNAJC5Q9H3Z4 198 aa17.7■□□□□ 0.42
CDK4-213ENST00000552713 SENP3Q9H4L4 574 aaPredicted RBP17.7■□□□□ 0.42
CDK4-213ENST00000552713 PHF23Q9BUL5 403 aaPredicted RBP17.48■□□□□ 0.39
CDK4-213ENST00000552713 CUX2O14529 1486 aa17.33■□□□□ 0.37
CDK4-213ENST00000552713 ERCC6Q03468 1493 aa17.27■□□□□ 0.36
CDK4-213ENST00000552713 NCAPD3P42695 1498 aa17.26■□□□□ 0.35
CDK4-213ENST00000552713 ATAD2BQ9ULI0 1458 aa17.19■□□□□ 0.34
CDK4-213ENST00000552713 NESP48681 1621 aa17.18■□□□□ 0.34
CDK4-213ENST00000552713 SMARCA4P51532 1647 aa17.13■□□□□ 0.33
CDK4-213ENST00000552713 HMGXB3Q12766 1538 aa17.11■□□□□ 0.33
CDK4-213ENST00000552713 SMARCA2P51531 1590 aa17.1■□□□□ 0.33
CDK4-213ENST00000552713 THOC2Q8NI27 1593 aaKnown RBP17.04■□□□□ 0.32
CDK4-213ENST00000552713 BAZ1BQ9UIG0 1483 aaKnown RBP16.99■□□□□ 0.31
CDK4-213ENST00000552713 KIF21AQ7Z4S6 1674 aa16.97■□□□□ 0.31
CDK4-213ENST00000552713 BAZ1AQ9NRL2 1556 aaPredicted RBP16.94■□□□□ 0.3
CDK4-213ENST00000552713 PEG3Q9GZU2 1588 aa16.94■□□□□ 0.3
CDK4-213ENST00000552713 LAMC3Q9Y6N6 1575 aa16.93■□□□□ 0.3
CDK4-213ENST00000552713 MROH2BQ7Z745 1585 aa16.87■□□□□ 0.29
CDK4-213ENST00000552713 TRIM41Q8WV44 630 aa16.82■□□□□ 0.28
CDK4-213ENST00000552713 PDS5BQ9NTI5 1447 aa16.79■□□□□ 0.28
CDK4-213ENST00000552713 CADPSQ9ULU8 1353 aa16.72■□□□□ 0.27
CDK4-213ENST00000552713 MRC2Q9UBG0 1479 aa16.71■□□□□ 0.27
CDK4-213ENST00000552713 WDR62O43379 1518 aa16.7■□□□□ 0.26
CDK4-213ENST00000552713 WIZO95785 1651 aa16.69■□□□□ 0.26
CDK4-213ENST00000552713 FOXD1Q16676 465 aa16.69■□□□□ 0.26
CDK4-213ENST00000552713 CEP164Q9UPV0 1460 aa16.58■□□□□ 0.24
CDK4-213ENST00000552713 FANCD2Q9BXW9 1451 aa16.55■□□□□ 0.24
CDK4-213ENST00000552713 OSCARQ8IYS5 282 aa16.49■□□□□ 0.23
CDK4-213ENST00000552713 URB2Q14146 1524 aaKnown RBP16.48■□□□□ 0.23
CDK4-213ENST00000552713 CFTRP13569 1480 aa16.48■□□□□ 0.23
CDK4-213ENST00000552713 RIMBP3CA6NJZ7 1639 aa16.41■□□□□ 0.22
CDK4-213ENST00000552713 RIMBP3BA6NNM3 1639 aa16.41■□□□□ 0.22
CDK4-213ENST00000552713 RIMBP3Q9UFD9 1639 aa16.41■□□□□ 0.22
CDK4-213ENST00000552713 POTEDQ86YR6 584 aa16.39■□□□□ 0.21
CDK4-213ENST00000552713 PRDM2Q13029 1718 aa16.39■□□□□ 0.21
CDK4-213ENST00000552713 TOP2AP11388 1531 aaKnown RBP16.38■□□□□ 0.21
CDK4-213ENST00000552713 RSF1Q96T23 1441 aaPredicted RBP16.37■□□□□ 0.21
CDK4-213ENST00000552713 ZNF608Q9ULD9 1512 aaPredicted RBP16.33■□□□□ 0.2
CDK4-213ENST00000552713 ARHGEF11O15085 1522 aa16.29■□□□□ 0.2
CDK4-213ENST00000552713 IFT140Q96RY7 1462 aa16.24■□□□□ 0.19
CDK4-213ENST00000552713 TOPBP1Q92547 1522 aa16.22■□□□□ 0.19
CDK4-213ENST00000552713 EIF4G3O43432 1585 aaKnown RBP16.21■□□□□ 0.19
CDK4-213ENST00000552713 CHD1O14646 1710 aa16.21■□□□□ 0.19
CDK4-213ENST00000552713 CCDC88BA6NC98 1476 aa16.21■□□□□ 0.19
CDK4-213ENST00000552713 CYB5RLQ6IPT4 315 aa16.16■□□□□ 0.18
CDK4-213ENST00000552713 TARBP1Q13395 1621 aaKnown RBP16.13■□□□□ 0.17
CDK4-213ENST00000552713 DNMBPQ6XZF7 1577 aa16.13■□□□□ 0.17
CDK4-213ENST00000552713 AQRO60306 1485 aaKnown RBP eCLIP16.12■□□□□ 0.179e-10■■■■■ 41.2
CDK4-213ENST00000552713 ARAP1Q96P48 1450 aa16.11■□□□□ 0.17
CDK4-213ENST00000552713 ABCC8Q09428 1581 aa16.09■□□□□ 0.17
CDK4-213ENST00000552713 TRHP20396 242 aaPredicted RBP16.05■□□□□ 0.16
CDK4-213ENST00000552713 POLA1P09884 1462 aaPredicted RBP16.03■□□□□ 0.16
CDK4-213ENST00000552713 FBLN2P98095 1184 aa16.03■□□□□ 0.16
CDK4-213ENST00000552713 RAD54L2Q9Y4B4 1467 aa16.01■□□□□ 0.15
CDK4-213ENST00000552713 TDRD9Q8NDG6 1382 aaKnown RBP15.97■□□□□ 0.15
CDK4-213ENST00000552713 CLASP1Q7Z460 1538 aa15.95■□□□□ 0.14
CDK4-213ENST00000552713 SNAPC4Q5SXM2 1469 aa15.93■□□□□ 0.14
CDK4-213ENST00000552713 SOGA1O94964 1423 aa15.93■□□□□ 0.14
CDK4-213ENST00000552713 FGD5Q6ZNL6 1462 aa15.9■□□□□ 0.14
CDK4-213ENST00000552713 SYNJ1O43426 1573 aa15.87■□□□□ 0.13
CDK4-213ENST00000552713 CUX1P39880 1505 aa15.86■□□□□ 0.13
CDK4-213ENST00000552713 WDR97A6NE52 1622 aa15.86■□□□□ 0.13
CDK4-213ENST00000552713 CHMP7Q8WUX9 453 aaPredicted RBP15.84■□□□□ 0.13
CDK4-213ENST00000552713 MAGI1Q96QZ7 1491 aaPredicted RBP15.84■□□□□ 0.13
CDK4-213ENST00000552713 PBRM1Q86U86 1689 aa15.83■□□□□ 0.13
CDK4-213ENST00000552713 GRIN2BQ13224 1484 aa15.81■□□□□ 0.12
CDK4-213ENST00000552713 SYNJ2O15056 1496 aa15.8■□□□□ 0.12
CDK4-213ENST00000552713 GAPVD1Q14C86 1478 aa15.77■□□□□ 0.11
CDK4-213ENST00000552713 ERCC6L2Q5T890 1561 aa15.74■□□□□ 0.11
CDK4-213ENST00000552713 ABCA5Q8WWZ7 1642 aa15.72■□□□□ 0.11
CDK4-213ENST00000552713 MSH5O43196 834 aa15.7■□□□□ 0.1
CDK4-213ENST00000552713 ABCA10Q8WWZ4 1543 aa15.68■□□□□ 0.1
CDK4-213ENST00000552713 CEP170Q5SW79 1584 aa15.64■□□□□ 0.09
CDK4-213ENST00000552713 GRIN2AQ12879 1464 aa15.64■□□□□ 0.09
CDK4-213ENST00000552713 KIF13AQ9H1H9 1805 aa15.64■□□□□ 0.09
CDK4-213ENST00000552713 ADAMTS12P58397 1594 aa15.62■□□□□ 0.09
CDK4-213ENST00000552713 SHROOM2Q13796 1616 aa15.6■□□□□ 0.09
CDK4-213ENST00000552713 NUP160Q12769 1436 aa15.6■□□□□ 0.09
CDK4-213ENST00000552713 BIVM-ERCC5R4GMW8 1640 aa15.53■□□□□ 0.08
CDK4-213ENST00000552713 WRNQ14191 1432 aaPredicted RBP eCLIP15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms