RNA–Protein interactions for RNA: ENST00000552127.5

BRF1-220, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, humanhuman

TSL 4

Gene BRF1, Length 778 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1-220ENST00000552127 NISCHQ9Y2I1 1504 aa38.79■■■■□ 3.8
BRF1-220ENST00000552127 ABCC9O60706 1549 aa36.18■■■■□ 3.38
BRF1-220ENST00000552127 CCDC180Q9P1Z9 1646 aa35.22■■■■□ 3.23
BRF1-220ENST00000552127 DNAJC5BQ9UF47 199 aa34.84■■■■□ 3.17
BRF1-220ENST00000552127 RB1CC1Q8TDY2 1594 aa34■■■■□ 3.03
BRF1-220ENST00000552127 PABPN1Q86U42 306 aaKnown RBP eCLIP33.55■■■□□ 2.96
BRF1-220ENST00000552127 NACADO15069 1562 aa33.52■■■□□ 2.96
BRF1-220ENST00000552127 UNC13AQ9UPW8 1703 aa33.29■■■□□ 2.92
BRF1-220ENST00000552127 DCAF8L2P0C7V8 631 aa33.18■■■□□ 2.9
BRF1-220ENST00000552127 BICRAQ9NZM4 1560 aa33.08■■■□□ 2.89
BRF1-220ENST00000552127 MYO15BQ96JP2 1530 aa32.72■■■□□ 2.83
BRF1-220ENST00000552127 CECR2Q9BXF3 1484 aa32.69■■■□□ 2.82
BRF1-220ENST00000552127 DNAJC5Q9H3Z4 198 aa32.66■■■□□ 2.82
BRF1-220ENST00000552127 CC2D2AQ9P2K1 1620 aa32.65■■■□□ 2.82
BRF1-220ENST00000552127 SHROOM4Q9ULL8 1493 aa32.47■■■□□ 2.79
BRF1-220ENST00000552127 EIF4G1Q04637 1599 aaKnown RBP32.33■■■□□ 2.77
BRF1-220ENST00000552127 SCRIBQ14160 1630 aa32.06■■■□□ 2.72
BRF1-220ENST00000552127 DCAF1Q9Y4B6 1507 aa31.95■■■□□ 2.71
BRF1-220ENST00000552127 ZCCHC6Q5VYS8 1495 aaKnown RBP31.93■■■□□ 2.7
BRF1-220ENST00000552127 CUX2O14529 1486 aa31.56■■■□□ 2.64
BRF1-220ENST00000552127 ERCC6Q03468 1493 aa31.3■■■□□ 2.6
BRF1-220ENST00000552127 NCAPD3P42695 1498 aa30.96■■■□□ 2.55
BRF1-220ENST00000552127 TRIM41Q8WV44 630 aa30.85■■■□□ 2.53
BRF1-220ENST00000552127 NESP48681 1621 aa30.83■■■□□ 2.53
BRF1-220ENST00000552127 ATAD2BQ9ULI0 1458 aa30.74■■■□□ 2.51
BRF1-220ENST00000552127 THOC2Q8NI27 1593 aaKnown RBP30.7■■■□□ 2.5
BRF1-220ENST00000552127 HMGXB3Q12766 1538 aa30.64■■■□□ 2.5
BRF1-220ENST00000552127 SMARCA2P51531 1590 aa30.58■■■□□ 2.49
BRF1-220ENST00000552127 SMARCA4P51532 1647 aa30.47■■■□□ 2.47
BRF1-220ENST00000552127 LAMC3Q9Y6N6 1575 aa30.42■■■□□ 2.46
BRF1-220ENST00000552127 KIF21AQ7Z4S6 1674 aa30.41■■■□□ 2.46
BRF1-220ENST00000552127 BAZ1BQ9UIG0 1483 aaKnown RBP30.38■■■□□ 2.45
BRF1-220ENST00000552127 PDS5BQ9NTI5 1447 aa30.27■■■□□ 2.44
BRF1-220ENST00000552127 PEG3Q9GZU2 1588 aa30.17■■■□□ 2.42
BRF1-220ENST00000552127 BAZ1AQ9NRL2 1556 aaPredicted RBP30.16■■■□□ 2.42
BRF1-220ENST00000552127 MRC2Q9UBG0 1479 aa30.07■■■□□ 2.4
BRF1-220ENST00000552127 WDR62O43379 1518 aa30.05■■■□□ 2.4
BRF1-220ENST00000552127 CADPSQ9ULU8 1353 aa29.98■■■□□ 2.39
BRF1-220ENST00000552127 OSCARQ8IYS5 282 aa29.97■■■□□ 2.39
BRF1-220ENST00000552127 MROH2BQ7Z745 1585 aa29.9■■■□□ 2.38
BRF1-220ENST00000552127 CEP164Q9UPV0 1460 aa29.76■■■□□ 2.35
BRF1-220ENST00000552127 RIMBP3CA6NJZ7 1639 aa29.71■■■□□ 2.35
BRF1-220ENST00000552127 RIMBP3BA6NNM3 1639 aa29.71■■■□□ 2.35
BRF1-220ENST00000552127 RIMBP3Q9UFD9 1639 aa29.71■■■□□ 2.35
BRF1-220ENST00000552127 FANCD2Q9BXW9 1451 aa29.65■■■□□ 2.34
BRF1-220ENST00000552127 WIZO95785 1651 aa29.51■■■□□ 2.31
BRF1-220ENST00000552127 ARHGEF11O15085 1522 aa29.5■■■□□ 2.31
BRF1-220ENST00000552127 URB2Q14146 1524 aaKnown RBP29.48■■■□□ 2.31
BRF1-220ENST00000552127 CFTRP13569 1480 aa29.44■■■□□ 2.3
BRF1-220ENST00000552127 CYB5RLQ6IPT4 315 aa29.35■■■□□ 2.29
BRF1-220ENST00000552127 TRHP20396 242 aaPredicted RBP29.34■■■□□ 2.29
BRF1-220ENST00000552127 ZNF608Q9ULD9 1512 aaPredicted RBP29.29■■■□□ 2.28
BRF1-220ENST00000552127 IFT140Q96RY7 1462 aa29.2■■■□□ 2.26
BRF1-220ENST00000552127 AEBP2Q6ZN18 517 aaPredicted RBP29.18■■■□□ 2.26
BRF1-220ENST00000552127 ARAP1Q96P48 1450 aa29.15■■■□□ 2.26
BRF1-220ENST00000552127 PRDM2Q13029 1718 aa29.08■■■□□ 2.25
BRF1-220ENST00000552127 EIF4G3O43432 1585 aaKnown RBP29.07■■■□□ 2.24
BRF1-220ENST00000552127 CHD1O14646 1710 aa29.06■■■□□ 2.24
BRF1-220ENST00000552127 TOP2AP11388 1531 aaKnown RBP29.03■■■□□ 2.24
BRF1-220ENST00000552127 TOPBP1Q92547 1522 aa28.99■■■□□ 2.23
BRF1-220ENST00000552127 RSF1Q96T23 1441 aaPredicted RBP28.96■■■□□ 2.23
BRF1-220ENST00000552127 FBLN2P98095 1184 aa28.89■■■□□ 2.22
BRF1-220ENST00000552127 AQRO60306 1485 aaKnown RBP eCLIP28.89■■■□□ 2.22
BRF1-220ENST00000552127 ABCC8Q09428 1581 aa28.82■■■□□ 2.2
BRF1-220ENST00000552127 TARBP1Q13395 1621 aaKnown RBP28.81■■■□□ 2.2
BRF1-220ENST00000552127 DNMBPQ6XZF7 1577 aa28.78■■■□□ 2.2
BRF1-220ENST00000552127 CCDC88BA6NC98 1476 aa28.72■■■□□ 2.19
BRF1-220ENST00000552127 CLASP1Q7Z460 1538 aa28.67■■■□□ 2.18
BRF1-220ENST00000552127 POLA1P09884 1462 aaPredicted RBP28.63■■■□□ 2.17
BRF1-220ENST00000552127 SNAPC4Q5SXM2 1469 aa28.56■■■□□ 2.16
BRF1-220ENST00000552127 TDRD9Q8NDG6 1382 aaKnown RBP28.56■■■□□ 2.16
BRF1-220ENST00000552127 RAD54L2Q9Y4B4 1467 aa28.56■■■□□ 2.16
BRF1-220ENST00000552127 SYNJ1O43426 1573 aa28.55■■■□□ 2.16
BRF1-220ENST00000552127 CHMP7Q8WUX9 453 aaPredicted RBP28.5■■■□□ 2.15
BRF1-220ENST00000552127 SOGA1O94964 1423 aa28.47■■■□□ 2.15
BRF1-220ENST00000552127 GAPVD1Q14C86 1478 aa28.44■■■□□ 2.14
BRF1-220ENST00000552127 MAGI1Q96QZ7 1491 aaPredicted RBP28.42■■■□□ 2.14
BRF1-220ENST00000552127 WDR97A6NE52 1622 aa28.41■■■□□ 2.14
BRF1-220ENST00000552127 SYNJ2O15056 1496 aa28.35■■■□□ 2.13
BRF1-220ENST00000552127 GRIN2BQ13224 1484 aa28.33■■■□□ 2.13
BRF1-220ENST00000552127 FGD5Q6ZNL6 1462 aa28.31■■■□□ 2.12
BRF1-220ENST00000552127 ERCC6L2Q5T890 1561 aa28.19■■■□□ 2.1
BRF1-220ENST00000552127 PBRM1Q86U86 1689 aa28.19■■■□□ 2.1
BRF1-220ENST00000552127 CUX1P39880 1505 aa28.14■■■□□ 2.1
BRF1-220ENST00000552127 KIF13AQ9H1H9 1805 aa28.12■■■□□ 2.09
BRF1-220ENST00000552127 ILDR1Q86SU0 546 aaPredicted RBP28.06■■■□□ 2.08
BRF1-220ENST00000552127 CEP170Q5SW79 1584 aa28.03■■■□□ 2.08
BRF1-220ENST00000552127 ABCA5Q8WWZ7 1642 aa27.99■■■□□ 2.07
BRF1-220ENST00000552127 GRIN2AQ12879 1464 aa27.98■■■□□ 2.07
BRF1-220ENST00000552127 SHROOM2Q13796 1616 aa27.92■■■□□ 2.06
BRF1-220ENST00000552127 ABCA10Q8WWZ4 1543 aa27.92■■■□□ 2.06
BRF1-220ENST00000552127 NUP160Q12769 1436 aa27.92■■■□□ 2.06
BRF1-220ENST00000552127 KDM4FA0A1W2PPD8 638 aa27.91■■■□□ 2.06
BRF1-220ENST00000552127 ADAMTS12P58397 1594 aa27.84■■■□□ 2.05
BRF1-220ENST00000552127 FAM69CQ0P6D2 419 aa27.83■■■□□ 2.05
BRF1-220ENST00000552127 ABCC10Q5T3U5 1492 aa27.81■■■□□ 2.04
BRF1-220ENST00000552127 SUPT5HO00267 1087 aaKnown RBP27.76■■■□□ 2.03
BRF1-220ENST00000552127 KDM6BO15054 1643 aa27.74■■■□□ 2.03
BRF1-220ENST00000552127 PRG4Q92954 1404 aaPredicted RBP27.73■■■□□ 2.03
BRF1-220ENST00000552127 DIP2BQ9P265 1576 aa27.72■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms