RNA–Protein interactions for RNA: ENST00000548130.5

SMARCC2-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2, humanhuman

TSL 5

Gene SMARCC2, Length 1,238 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC2-205ENST00000548130 AEBP2Q6ZN18 517 aaPredicted RBP22.73■■□□□ 1.23
SMARCC2-205ENST00000548130 CHIC1Q5VXU3 224 aa21.87■■□□□ 1.09
SMARCC2-205ENST00000548130 NISCHQ9Y2I1 1504 aa21.45■■□□□ 1.02
SMARCC2-205ENST00000548130 SENP3Q9H4L4 574 aaPredicted RBP19.5■□□□□ 0.71
SMARCC2-205ENST00000548130 PHF23Q9BUL5 403 aaPredicted RBP19.2■□□□□ 0.66
SMARCC2-205ENST00000548130 CCDC180Q9P1Z9 1646 aa18.96■□□□□ 0.63
SMARCC2-205ENST00000548130 ABCC9O60706 1549 aa18.67■□□□□ 0.58
SMARCC2-205ENST00000548130 FOXD1Q16676 465 aa18.04■□□□□ 0.48
SMARCC2-205ENST00000548130 DCAF8L2P0C7V8 631 aa18.03■□□□□ 0.48
SMARCC2-205ENST00000548130 RB1CC1Q8TDY2 1594 aa17.88■□□□□ 0.45
SMARCC2-205ENST00000548130 NACADO15069 1562 aa17.87■□□□□ 0.45
SMARCC2-205ENST00000548130 ZCCHC6Q5VYS8 1495 aaKnown RBP17.87■□□□□ 0.45
SMARCC2-205ENST00000548130 MYO15BQ96JP2 1530 aa17.75■□□□□ 0.43
SMARCC2-205ENST00000548130 DCAF1Q9Y4B6 1507 aa17.69■□□□□ 0.42
SMARCC2-205ENST00000548130 PLPPR3Q6T4P5 718 aa17.63■□□□□ 0.41
SMARCC2-205ENST00000548130 PABPN1Q86U42 306 aaKnown RBP eCLIP17.51■□□□□ 0.39
SMARCC2-205ENST00000548130 UNC13AQ9UPW8 1703 aa17.41■□□□□ 0.38
SMARCC2-205ENST00000548130 SCRIBQ14160 1630 aa17.4■□□□□ 0.38
SMARCC2-205ENST00000548130 BICRAQ9NZM4 1560 aa17.36■□□□□ 0.37
SMARCC2-205ENST00000548130 DNAJC5BQ9UF47 199 aa17.32■□□□□ 0.36
SMARCC2-205ENST00000548130 SHROOM4Q9ULL8 1493 aa17.13■□□□□ 0.33
SMARCC2-205ENST00000548130 PPP6R1Q9UPN7 881 aa16.98■□□□□ 0.31
SMARCC2-205ENST00000548130 ADRA2BP18089 450 aa16.97■□□□□ 0.31
SMARCC2-205ENST00000548130 PIAS4Q8N2W9 510 aaPredicted RBP16.97■□□□□ 0.31
SMARCC2-205ENST00000548130 MSH5O43196 834 aa16.93■□□□□ 0.3
SMARCC2-205ENST00000548130 EIF4G1Q04637 1599 aaKnown RBP16.9■□□□□ 0.3
SMARCC2-205ENST00000548130 CC2D2AQ9P2K1 1620 aa16.83■□□□□ 0.28
SMARCC2-205ENST00000548130 CECR2Q9BXF3 1484 aa16.76■□□□□ 0.27
SMARCC2-205ENST00000548130 SMARCA4P51532 1647 aa16.6■□□□□ 0.25
SMARCC2-205ENST00000548130 BAZ1AQ9NRL2 1556 aaPredicted RBP16.6■□□□□ 0.25
SMARCC2-205ENST00000548130 MROH2BQ7Z745 1585 aa16.55■□□□□ 0.24
SMARCC2-205ENST00000548130 ATAD2BQ9ULI0 1458 aa16.55■□□□□ 0.24
SMARCC2-205ENST00000548130 NCAPD3P42695 1498 aa16.53■□□□□ 0.24
SMARCC2-205ENST00000548130 SMARCA2P51531 1590 aa16.5■□□□□ 0.23
SMARCC2-205ENST00000548130 PEG3Q9GZU2 1588 aa16.42■□□□□ 0.22
SMARCC2-205ENST00000548130 BAZ1BQ9UIG0 1483 aaKnown RBP16.42■□□□□ 0.22
SMARCC2-205ENST00000548130 HMGXB3Q12766 1538 aa16.4■□□□□ 0.22
SMARCC2-205ENST00000548130 RSF1Q96T23 1441 aaPredicted RBP16.38■□□□□ 0.21
SMARCC2-205ENST00000548130 WIZO95785 1651 aa16.34■□□□□ 0.21
SMARCC2-205ENST00000548130 TOP2AP11388 1531 aaKnown RBP16.18■□□□□ 0.18
SMARCC2-205ENST00000548130 NESP48681 1621 aa16.16■□□□□ 0.18
SMARCC2-205ENST00000548130 SUPT5HO00267 1087 aaKnown RBP16.08■□□□□ 0.16
SMARCC2-205ENST00000548130 CADPSQ9ULU8 1353 aa16.08■□□□□ 0.16
SMARCC2-205ENST00000548130 ERCC6Q03468 1493 aa16.08■□□□□ 0.16
SMARCC2-205ENST00000548130 POTEDQ86YR6 584 aa16.06■□□□□ 0.16
SMARCC2-205ENST00000548130 DNAJC5Q9H3Z4 198 aa16.04■□□□□ 0.16
SMARCC2-205ENST00000548130 LAMC3Q9Y6N6 1575 aa16.04■□□□□ 0.16
SMARCC2-205ENST00000548130 CCDC88BA6NC98 1476 aa16.02■□□□□ 0.15
SMARCC2-205ENST00000548130 PDS5BQ9NTI5 1447 aa15.98■□□□□ 0.15
SMARCC2-205ENST00000548130 CFTRP13569 1480 aa15.96■□□□□ 0.14
SMARCC2-205ENST00000548130 FANCD2Q9BXW9 1451 aa15.88■□□□□ 0.13
SMARCC2-205ENST00000548130 KIF21AQ7Z4S6 1674 aa15.88■□□□□ 0.13
SMARCC2-205ENST00000548130 CUX2O14529 1486 aa15.85■□□□□ 0.13
SMARCC2-205ENST00000548130 CEP164Q9UPV0 1460 aa15.84■□□□□ 0.13
SMARCC2-205ENST00000548130 THOC2Q8NI27 1593 aaKnown RBP15.83■□□□□ 0.13
SMARCC2-205ENST00000548130 MRC2Q9UBG0 1479 aa15.82■□□□□ 0.12
SMARCC2-205ENST00000548130 WDR62O43379 1518 aa15.73■□□□□ 0.11
SMARCC2-205ENST00000548130 URB2Q14146 1524 aaKnown RBP15.72■□□□□ 0.11
SMARCC2-205ENST00000548130 PRDM2Q13029 1718 aa15.71■□□□□ 0.1
SMARCC2-205ENST00000548130 SCAF1Q9H7N4 1312 aaKnown RBP15.68■□□□□ 0.1
SMARCC2-205ENST00000548130 TOPBP1Q92547 1522 aa15.63■□□□□ 0.09
SMARCC2-205ENST00000548130 ABCC8Q09428 1581 aa15.58■□□□□ 0.09
SMARCC2-205ENST00000548130 DNMBPQ6XZF7 1577 aa15.58■□□□□ 0.08
SMARCC2-205ENST00000548130 IFT140Q96RY7 1462 aa15.52■□□□□ 0.08
SMARCC2-205ENST00000548130 CUX1P39880 1505 aa15.52■□□□□ 0.07
SMARCC2-205ENST00000548130 POLA1P09884 1462 aaPredicted RBP15.5■□□□□ 0.07
SMARCC2-205ENST00000548130 MAPK8IP2Q13387 824 aaPredicted RBP15.49■□□□□ 0.07
SMARCC2-205ENST00000548130 ZNF608Q9ULD9 1512 aaPredicted RBP15.48■□□□□ 0.07
SMARCC2-205ENST00000548130 FGD5Q6ZNL6 1462 aa15.47■□□□□ 0.07
SMARCC2-205ENST00000548130 RAD54L2Q9Y4B4 1467 aa15.46■□□□□ 0.07
SMARCC2-205ENST00000548130 DMRT2Q9Y5R5 561 aa15.46■□□□□ 0.07
SMARCC2-205ENST00000548130 SOGA1O94964 1423 aa15.45■□□□□ 0.06
SMARCC2-205ENST00000548130 WRNQ14191 1432 aaPredicted RBP eCLIP15.44■□□□□ 0.06
SMARCC2-205ENST00000548130 PPP4R3CPQ6ZMV5 832 aa15.43■□□□□ 0.06
SMARCC2-205ENST00000548130 AQRO60306 1485 aaKnown RBP eCLIP15.4■□□□□ 0.062e-8■■■■□ 22.4
SMARCC2-205ENST00000548130 TARBP1Q13395 1621 aaKnown RBP15.4■□□□□ 0.06
SMARCC2-205ENST00000548130 TDRD9Q8NDG6 1382 aaKnown RBP15.39■□□□□ 0.05
SMARCC2-205ENST00000548130 SYNJ1O43426 1573 aa15.38■□□□□ 0.05
SMARCC2-205ENST00000548130 EIF4G3O43432 1585 aaKnown RBP15.35■□□□□ 0.05
SMARCC2-205ENST00000548130 TOP2BQ02880 1626 aa15.35■□□□□ 0.05
SMARCC2-205ENST00000548130 BIVM-ERCC5R4GMW8 1640 aa15.32■□□□□ 0.04
SMARCC2-205ENST00000548130 ABCA10Q8WWZ4 1543 aa15.31■□□□□ 0.04
SMARCC2-205ENST00000548130 TRIM41Q8WV44 630 aa15.3■□□□□ 0.04
SMARCC2-205ENST00000548130 FBLN2P98095 1184 aa15.26■□□□□ 0.03
SMARCC2-205ENST00000548130 OSCARQ8IYS5 282 aa15.26■□□□□ 0.03
SMARCC2-205ENST00000548130 GAPVD1Q14C86 1478 aa15.26■□□□□ 0.03
SMARCC2-205ENST00000548130 GRIN2BQ13224 1484 aa15.25■□□□□ 0.03
SMARCC2-205ENST00000548130 WDR97A6NE52 1622 aa15.25■□□□□ 0.03
SMARCC2-205ENST00000548130 SNAPC4Q5SXM2 1469 aa15.24■□□□□ 0.03
SMARCC2-205ENST00000548130 ABCA5Q8WWZ7 1642 aa15.21■□□□□ 0.02
SMARCC2-205ENST00000548130 CHMP7Q8WUX9 453 aaPredicted RBP15.19■□□□□ 0.02
SMARCC2-205ENST00000548130 MAGI1Q96QZ7 1491 aaPredicted RBP15.19■□□□□ 0.02
SMARCC2-205ENST00000548130 PBRM1Q86U86 1689 aa15.14■□□□□ 0.01
SMARCC2-205ENST00000548130 SYNJ2O15056 1496 aa15.14■□□□□ 0.01
SMARCC2-205ENST00000548130 CNKSR2Q8WXI2 1034 aa15.13■□□□□ 0.01
SMARCC2-205ENST00000548130 CHD1O14646 1710 aa15.12■□□□□ 0.01
SMARCC2-205ENST00000548130 KIF27Q86VH2 1401 aa15.12■□□□□ 0.01
SMARCC2-205ENST00000548130 ERICH3Q5RHP9 1530 aa15.09■□□□□ 0.01
SMARCC2-205ENST00000548130 FHAD1B1AJZ9 1412 aa15.09■□□□□ 0.01
SMARCC2-205ENST00000548130 IGF1RP08069 1367 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms