RNA–Protein interactions for RNA: ENST00000543957.5

ITM2C-209, Transcript of integral membrane protein 2C, humanhuman

TSL 5

Gene ITM2C, Length 573 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITM2C-209ENST00000543957 NISCHQ9Y2I1 1504 aa31.29■■■□□ 2.6
ITM2C-209ENST00000543957 ABCC9O60706 1549 aa29.06■■■□□ 2.24
ITM2C-209ENST00000543957 CCDC180Q9P1Z9 1646 aa28.31■■■□□ 2.12
ITM2C-209ENST00000543957 DNAJC5BQ9UF47 199 aa27.91■■■□□ 2.06
ITM2C-209ENST00000543957 RB1CC1Q8TDY2 1594 aa27.32■■□□□ 1.96
ITM2C-209ENST00000543957 PABPN1Q86U42 306 aaKnown RBP eCLIP26.99■■□□□ 1.91
ITM2C-209ENST00000543957 NACADO15069 1562 aa26.97■■□□□ 1.91
ITM2C-209ENST00000543957 DCAF8L2P0C7V8 631 aa26.8■■□□□ 1.88
ITM2C-209ENST00000543957 UNC13AQ9UPW8 1703 aa26.63■■□□□ 1.85
ITM2C-209ENST00000543957 BICRAQ9NZM4 1560 aa26.54■■□□□ 1.84
ITM2C-209ENST00000543957 MYO15BQ96JP2 1530 aa26.37■■□□□ 1.81
ITM2C-209ENST00000543957 CECR2Q9BXF3 1484 aa26.25■■□□□ 1.79
ITM2C-209ENST00000543957 CC2D2AQ9P2K1 1620 aa26.18■■□□□ 1.78
ITM2C-209ENST00000543957 DNAJC5Q9H3Z4 198 aa26.13■■□□□ 1.77
ITM2C-209ENST00000543957 SHROOM4Q9ULL8 1493 aa26.11■■□□□ 1.77
ITM2C-209ENST00000543957 EIF4G1Q04637 1599 aaKnown RBP25.96■■□□□ 1.75
ITM2C-209ENST00000543957 DCAF1Q9Y4B6 1507 aa25.78■■□□□ 1.72
ITM2C-209ENST00000543957 SCRIBQ14160 1630 aa25.78■■□□□ 1.72
ITM2C-209ENST00000543957 ZCCHC6Q5VYS8 1495 aaKnown RBP25.77■■□□□ 1.72
ITM2C-209ENST00000543957 CUX2O14529 1486 aa25.31■■□□□ 1.64
ITM2C-209ENST00000543957 ERCC6Q03468 1493 aa25.14■■□□□ 1.61
ITM2C-209ENST00000543957 NCAPD3P42695 1498 aa24.95■■□□□ 1.58
ITM2C-209ENST00000543957 ATAD2BQ9ULI0 1458 aa24.77■■□□□ 1.56
ITM2C-209ENST00000543957 NESP48681 1621 aa24.75■■□□□ 1.55
ITM2C-209ENST00000543957 TRIM41Q8WV44 630 aa24.71■■□□□ 1.55
ITM2C-209ENST00000543957 HMGXB3Q12766 1538 aa24.65■■□□□ 1.54
ITM2C-209ENST00000543957 SMARCA2P51531 1590 aa24.63■■□□□ 1.53
ITM2C-209ENST00000543957 THOC2Q8NI27 1593 aaKnown RBP24.59■■□□□ 1.53
ITM2C-209ENST00000543957 SMARCA4P51532 1647 aa24.52■■□□□ 1.52
ITM2C-209ENST00000543957 BAZ1BQ9UIG0 1483 aaKnown RBP24.48■■□□□ 1.51
ITM2C-209ENST00000543957 LAMC3Q9Y6N6 1575 aa24.45■■□□□ 1.5
ITM2C-209ENST00000543957 PDS5BQ9NTI5 1447 aa24.38■■□□□ 1.49
ITM2C-209ENST00000543957 KIF21AQ7Z4S6 1674 aa24.35■■□□□ 1.49
ITM2C-209ENST00000543957 BAZ1AQ9NRL2 1556 aaPredicted RBP24.32■■□□□ 1.48
ITM2C-209ENST00000543957 PEG3Q9GZU2 1588 aa24.29■■□□□ 1.48
ITM2C-209ENST00000543957 MRC2Q9UBG0 1479 aa24.19■■□□□ 1.46
ITM2C-209ENST00000543957 CADPSQ9ULU8 1353 aa24.16■■□□□ 1.46
ITM2C-209ENST00000543957 WDR62O43379 1518 aa24.13■■□□□ 1.45
ITM2C-209ENST00000543957 OSCARQ8IYS5 282 aa24.1■■□□□ 1.45
ITM2C-209ENST00000543957 MROH2BQ7Z745 1585 aa24.1■■□□□ 1.45
ITM2C-209ENST00000543957 CEP164Q9UPV0 1460 aa23.95■■□□□ 1.42
ITM2C-209ENST00000543957 FANCD2Q9BXW9 1451 aa23.87■■□□□ 1.41
ITM2C-209ENST00000543957 RIMBP3CA6NJZ7 1639 aa23.77■■□□□ 1.4
ITM2C-209ENST00000543957 RIMBP3BA6NNM3 1639 aa23.77■■□□□ 1.4
ITM2C-209ENST00000543957 RIMBP3Q9UFD9 1639 aa23.77■■□□□ 1.4
ITM2C-209ENST00000543957 WIZO95785 1651 aa23.75■■□□□ 1.39
ITM2C-209ENST00000543957 CFTRP13569 1480 aa23.73■■□□□ 1.39
ITM2C-209ENST00000543957 URB2Q14146 1524 aaKnown RBP23.7■■□□□ 1.38
ITM2C-209ENST00000543957 ARHGEF11O15085 1522 aa23.65■■□□□ 1.38
ITM2C-209ENST00000543957 CYB5RLQ6IPT4 315 aa23.6■■□□□ 1.37
ITM2C-209ENST00000543957 TRHP20396 242 aaPredicted RBP23.56■■□□□ 1.36
ITM2C-209ENST00000543957 ZNF608Q9ULD9 1512 aaPredicted RBP23.54■■□□□ 1.36
ITM2C-209ENST00000543957 IFT140Q96RY7 1462 aa23.5■■□□□ 1.35
ITM2C-209ENST00000543957 TOP2AP11388 1531 aaKnown RBP23.41■■□□□ 1.34
ITM2C-209ENST00000543957 ARAP1Q96P48 1450 aa23.38■■□□□ 1.33
ITM2C-209ENST00000543957 AEBP2Q6ZN18 517 aaPredicted RBP23.38■■□□□ 1.33
ITM2C-209ENST00000543957 RSF1Q96T23 1441 aaPredicted RBP23.37■■□□□ 1.33
ITM2C-209ENST00000543957 TOPBP1Q92547 1522 aa23.33■■□□□ 1.33
ITM2C-209ENST00000543957 EIF4G3O43432 1585 aaKnown RBP23.33■■□□□ 1.33
ITM2C-209ENST00000543957 PRDM2Q13029 1718 aa23.32■■□□□ 1.32
ITM2C-209ENST00000543957 FBLN2P98095 1184 aa23.28■■□□□ 1.32
ITM2C-209ENST00000543957 AQRO60306 1485 aaKnown RBP eCLIP23.26■■□□□ 1.311e-8■■■□□ 18.9
ITM2C-209ENST00000543957 CHD1O14646 1710 aa23.26■■□□□ 1.31
ITM2C-209ENST00000543957 ABCC8Q09428 1581 aa23.24■■□□□ 1.31
ITM2C-209ENST00000543957 CCDC88BA6NC98 1476 aa23.19■■□□□ 1.3
ITM2C-209ENST00000543957 DNMBPQ6XZF7 1577 aa23.16■■□□□ 1.3
ITM2C-209ENST00000543957 TARBP1Q13395 1621 aaKnown RBP23.15■■□□□ 1.3
ITM2C-209ENST00000543957 POLA1P09884 1462 aaPredicted RBP23.05■■□□□ 1.28
ITM2C-209ENST00000543957 CLASP1Q7Z460 1538 aa23.02■■□□□ 1.28
ITM2C-209ENST00000543957 TDRD9Q8NDG6 1382 aaKnown RBP23.01■■□□□ 1.27
ITM2C-209ENST00000543957 RAD54L2Q9Y4B4 1467 aa23■■□□□ 1.27
ITM2C-209ENST00000543957 CHMP7Q8WUX9 453 aaPredicted RBP22.99■■□□□ 1.27
ITM2C-209ENST00000543957 SOGA1O94964 1423 aa22.98■■□□□ 1.27
ITM2C-209ENST00000543957 SNAPC4Q5SXM2 1469 aa22.98■■□□□ 1.27
ITM2C-209ENST00000543957 SYNJ1O43426 1573 aa22.95■■□□□ 1.26
ITM2C-209ENST00000543957 MAGI1Q96QZ7 1491 aaPredicted RBP22.88■■□□□ 1.25
ITM2C-209ENST00000543957 GAPVD1Q14C86 1478 aa22.86■■□□□ 1.25
ITM2C-209ENST00000543957 WDR97A6NE52 1622 aa22.86■■□□□ 1.25
ITM2C-209ENST00000543957 GRIN2BQ13224 1484 aa22.83■■□□□ 1.25
ITM2C-209ENST00000543957 SYNJ2O15056 1496 aa22.82■■□□□ 1.24
ITM2C-209ENST00000543957 FGD5Q6ZNL6 1462 aa22.81■■□□□ 1.24
ITM2C-209ENST00000543957 CUX1P39880 1505 aa22.67■■□□□ 1.22
ITM2C-209ENST00000543957 ERCC6L2Q5T890 1561 aa22.63■■□□□ 1.21
ITM2C-209ENST00000543957 PBRM1Q86U86 1689 aa22.62■■□□□ 1.21
ITM2C-209ENST00000543957 GRIN2AQ12879 1464 aa22.53■■□□□ 1.2
ITM2C-209ENST00000543957 CEP170Q5SW79 1584 aa22.52■■□□□ 1.2
ITM2C-209ENST00000543957 ABCA10Q8WWZ4 1543 aa22.52■■□□□ 1.19
ITM2C-209ENST00000543957 ABCA5Q8WWZ7 1642 aa22.5■■□□□ 1.19
ITM2C-209ENST00000543957 NUP160Q12769 1436 aa22.48■■□□□ 1.19
ITM2C-209ENST00000543957 KIF13AQ9H1H9 1805 aa22.47■■□□□ 1.19
ITM2C-209ENST00000543957 ILDR1Q86SU0 546 aaPredicted RBP22.42■■□□□ 1.18
ITM2C-209ENST00000543957 SHROOM2Q13796 1616 aa22.42■■□□□ 1.18
ITM2C-209ENST00000543957 FAM69CQ0P6D2 419 aa22.4■■□□□ 1.18
ITM2C-209ENST00000543957 ADAMTS12P58397 1594 aa22.39■■□□□ 1.18
ITM2C-209ENST00000543957 KDM4FA0A1W2PPD8 638 aa22.39■■□□□ 1.17
ITM2C-209ENST00000543957 ABCC10Q5T3U5 1492 aa22.34■■□□□ 1.17
ITM2C-209ENST00000543957 FHAD1B1AJZ9 1412 aa22.34■■□□□ 1.17
ITM2C-209ENST00000543957 PRG4Q92954 1404 aaPredicted RBP22.34■■□□□ 1.17
ITM2C-209ENST00000543957 WRNQ14191 1432 aaPredicted RBP eCLIP22.31■■□□□ 1.16
ITM2C-209ENST00000543957 NPM1P06748 294 aaKnown RBP eCLIP22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms