RNA–Protein interactions for RNA: ENST00000542866.2

KDM3B-209, Transcript of lysine demethylase 3B, humanhuman

TSL 2 BASIC

Gene KDM3B, Length 3,634 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KDM3B-209ENST00000542866 NISCHQ9Y2I1 1504 aa10.54□□□□□ -0.72
KDM3B-209ENST00000542866 DCAF8L2P0C7V8 631 aa9.33□□□□□ -0.92
KDM3B-209ENST00000542866 CCDC180Q9P1Z9 1646 aa9.1□□□□□ -0.95
KDM3B-209ENST00000542866 ABCC9O60706 1549 aa9.05□□□□□ -0.96
KDM3B-209ENST00000542866 SHROOM4Q9ULL8 1493 aa8.99□□□□□ -0.97
KDM3B-209ENST00000542866 SUPT5HO00267 1087 aaKnown RBP8.96□□□□□ -0.98
KDM3B-209ENST00000542866 HRCP23327 699 aa8.87□□□□□ -0.99
KDM3B-209ENST00000542866 PCGF6Q9BYE7 350 aa8.8□□□□□ -1
KDM3B-209ENST00000542866 ZCCHC6Q5VYS8 1495 aaKnown RBP8.78□□□□□ -1
KDM3B-209ENST00000542866 PPARGC1BQ86YN6 1023 aaKnown RBP8.75□□□□□ -1.01
KDM3B-209ENST00000542866 CHIC1Q5VXU3 224 aa8.7□□□□□ -1.02
KDM3B-209ENST00000542866 MYO15BQ96JP2 1530 aa8.68□□□□□ -1.02
KDM3B-209ENST00000542866 RB1CC1Q8TDY2 1594 aa8.65□□□□□ -1.02
KDM3B-209ENST00000542866 NACADO15069 1562 aa8.65□□□□□ -1.02
KDM3B-209ENST00000542866 PABPN1Q86U42 306 aaKnown RBP eCLIP8.62□□□□□ -1.03
KDM3B-209ENST00000542866 DCAF1Q9Y4B6 1507 aa8.61□□□□□ -1.03
KDM3B-209ENST00000542866 SLC24A1O60721 1099 aa8.59□□□□□ -1.04
KDM3B-209ENST00000542866 LOC105371045A0A1W2PR82 267 aa8.55□□□□□ -1.04
KDM3B-209ENST00000542866 SCRIBQ14160 1630 aa8.54□□□□□ -1.04
KDM3B-209ENST00000542866 PELP1Q8IZL8 1130 aaKnown RBP8.51□□□□□ -1.05
KDM3B-209ENST00000542866 TRIM26Q12899 539 aaPredicted RBP8.47□□□□□ -1.05
KDM3B-209ENST00000542866 MYT1Q01538 1121 aa8.39□□□□□ -1.07
KDM3B-209ENST00000542866 ZEB1P37275 1124 aaPredicted RBP8.38□□□□□ -1.07
KDM3B-209ENST00000542866 SCAF1Q9H7N4 1312 aaKnown RBP8.36□□□□□ -1.07
KDM3B-209ENST00000542866 EHMT2Q96KQ7 1210 aa8.33□□□□□ -1.08
KDM3B-209ENST00000542866 FAM9AQ8IZU1 332 aaPredicted RBP8.31□□□□□ -1.08
KDM3B-209ENST00000542866 UNC13AQ9UPW8 1703 aa8.31□□□□□ -1.08
KDM3B-209ENST00000542866 TRIM41Q8WV44 630 aa8.26□□□□□ -1.09
KDM3B-209ENST00000542866 CECR2Q9BXF3 1484 aa8.23□□□□□ -1.09
KDM3B-209ENST00000542866 BAZ1AQ9NRL2 1556 aaPredicted RBP8.2□□□□□ -1.1
KDM3B-209ENST00000542866 ACIN1Q9UKV3 1341 aaKnown RBP8.19□□□□□ -1.1
KDM3B-209ENST00000542866 RSF1Q96T23 1441 aaPredicted RBP8.19□□□□□ -1.1
KDM3B-209ENST00000542866 NEUROD1Q13562 356 aa8.18□□□□□ -1.1
KDM3B-209ENST00000542866 BICRAQ9NZM4 1560 aa8.18□□□□□ -1.1
KDM3B-209ENST00000542866 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.17□□□□□ -1.1
KDM3B-209ENST00000542866 CCER1Q8TC90 406 aaPredicted RBP8.17□□□□□ -1.1
KDM3B-209ENST00000542866 GTF3C3Q9Y5Q9 886 aa8.16□□□□□ -1.1
KDM3B-209ENST00000542866 CENPBP07199 599 aaPredicted RBP8.13□□□□□ -1.11
KDM3B-209ENST00000542866 MROH2BQ7Z745 1585 aa8.13□□□□□ -1.11
KDM3B-209ENST00000542866 BAZ1BQ9UIG0 1483 aaKnown RBP8.12□□□□□ -1.11
KDM3B-209ENST00000542866 PRKCSHP14314 528 aaPredicted RBP8.11□□□□□ -1.11
KDM3B-209ENST00000542866 DIEXFQ68CQ4 756 aaKnown RBP8.11□□□□□ -1.11
KDM3B-209ENST00000542866 TTBK1Q5TCY1 1321 aaPredicted RBP8.11□□□□□ -1.11
KDM3B-209ENST00000542866 EIF4G1Q04637 1599 aaKnown RBP8.09□□□□□ -1.11
KDM3B-209ENST00000542866 SMARCA2P51531 1590 aa8.09□□□□□ -1.11
KDM3B-209ENST00000542866 SMARCA4P51532 1647 aa8.08□□□□□ -1.12
KDM3B-209ENST00000542866 ATAD2BQ9ULI0 1458 aa8.07□□□□□ -1.12
KDM3B-209ENST00000542866 YTHDC1Q96MU7 727 aaKnown RBP8.05□□□□□ -1.12
KDM3B-209ENST00000542866 DNAJC5BQ9UF47 199 aa8.01□□□□□ -1.13
KDM3B-209ENST00000542866 NCAPD3P42695 1498 aa8.01□□□□□ -1.13
KDM3B-209ENST00000542866 WIZO95785 1651 aa8.01□□□□□ -1.13
KDM3B-209ENST00000542866 CC2D2AQ9P2K1 1620 aa8□□□□□ -1.13
KDM3B-209ENST00000542866 TOP2AP11388 1531 aaKnown RBP7.98□□□□□ -1.13
KDM3B-209ENST00000542866 APLP2Q06481 763 aa7.97□□□□□ -1.13
KDM3B-209ENST00000542866 DAXXQ9UER7 740 aaPredicted RBP7.96□□□□□ -1.13
KDM3B-209ENST00000542866 ZNF316A6NFI3 1004 aaPredicted RBP7.96□□□□□ -1.14
KDM3B-209ENST00000542866 CCDC88BA6NC98 1476 aa7.94□□□□□ -1.14
KDM3B-209ENST00000542866 HMGXB3Q12766 1538 aa7.92□□□□□ -1.14
KDM3B-209ENST00000542866 CADPSQ9ULU8 1353 aa7.91□□□□□ -1.14
KDM3B-209ENST00000542866 MIER1Q8N108 512 aa7.91□□□□□ -1.14
KDM3B-209ENST00000542866 ERCC6Q03468 1493 aa7.9□□□□□ -1.14
KDM3B-209ENST00000542866 PEG3Q9GZU2 1588 aa7.88□□□□□ -1.15
KDM3B-209ENST00000542866 PDS5BQ9NTI5 1447 aa7.88□□□□□ -1.15
KDM3B-209ENST00000542866 UBTFP17480 764 aaKnown RBP7.88□□□□□ -1.15
KDM3B-209ENST00000542866 HNRNPUL2Q1KMD3 747 aaKnown RBP7.87□□□□□ -1.15
KDM3B-209ENST00000542866 CEP162Q5TB80 1403 aa7.83□□□□□ -1.16
KDM3B-209ENST00000542866 ERICH6Q7L0X2 663 aa7.83□□□□□ -1.16
KDM3B-209ENST00000542866 WRNQ14191 1432 aaPredicted RBP eCLIP7.83□□□□□ -1.16
KDM3B-209ENST00000542866 FANCD2Q9BXW9 1451 aa7.8□□□□□ -1.16
KDM3B-209ENST00000542866 BCL11AQ9H165 835 aa7.8□□□□□ -1.16
KDM3B-209ENST00000542866 CFTRP13569 1480 aa7.8□□□□□ -1.16
KDM3B-209ENST00000542866 RANGAP1P46060 587 aaPredicted RBP7.79□□□□□ -1.16
KDM3B-209ENST00000542866 NESP48681 1621 aa7.79□□□□□ -1.16
KDM3B-209ENST00000542866 CEP164Q9UPV0 1460 aa7.79□□□□□ -1.16
KDM3B-209ENST00000542866 CSRNP3Q8WYN3 585 aa7.78□□□□□ -1.16
KDM3B-209ENST00000542866 SOGA1O94964 1423 aa7.77□□□□□ -1.17
KDM3B-209ENST00000542866 TNIKQ9UKE5 1360 aa7.77□□□□□ -1.17
KDM3B-209ENST00000542866 FBLN2P98095 1184 aa7.77□□□□□ -1.17
KDM3B-209ENST00000542866 ABCC8Q09428 1581 aa7.77□□□□□ -1.17
KDM3B-209ENST00000542866 AEBP2Q6ZN18 517 aaPredicted RBP7.75□□□□□ -1.17
KDM3B-209ENST00000542866 SUPT16HQ9Y5B9 1047 aaKnown RBP7.74□□□□□ -1.17
KDM3B-209ENST00000542866 LAMC3Q9Y6N6 1575 aa7.73□□□□□ -1.17
KDM3B-209ENST00000542866 RUSC2Q8N2Y8 1516 aa7.72□□□□□ -1.17
KDM3B-209ENST00000542866 KIF27Q86VH2 1401 aa7.69□□□□□ -1.18
KDM3B-209ENST00000542866 TSHZ2Q9NRE2 1034 aa7.69□□□□□ -1.18
KDM3B-209ENST00000542866 BCANQ96GW7 911 aa7.68□□□□□ -1.18
KDM3B-209ENST00000542866 CHMP7Q8WUX9 453 aaPredicted RBP7.68□□□□□ -1.18
KDM3B-209ENST00000542866 ANP32EQ9BTT0 268 aa7.68□□□□□ -1.18
KDM3B-209ENST00000542866 CUX2O14529 1486 aa7.68□□□□□ -1.18
KDM3B-209ENST00000542866 GOLGA3Q08378 1498 aa7.68□□□□□ -1.18
KDM3B-209ENST00000542866 MRC2Q9UBG0 1479 aa7.68□□□□□ -1.18
KDM3B-209ENST00000542866 CLSPNQ9HAW4 1339 aa7.67□□□□□ -1.18
KDM3B-209ENST00000542866 TDRD9Q8NDG6 1382 aaKnown RBP7.67□□□□□ -1.18
KDM3B-209ENST00000542866 ATP1B4Q9UN42 357 aaPredicted RBP7.66□□□□□ -1.18
KDM3B-209ENST00000542866 EEA1Q15075 1411 aa7.66□□□□□ -1.18
KDM3B-209ENST00000542866 CLIP1P30622 1438 aa7.65□□□□□ -1.19
KDM3B-209ENST00000542866 FGD5Q6ZNL6 1462 aa7.65□□□□□ -1.19
KDM3B-209ENST00000542866 NCBP3Q53F19 620 aaKnown RBP7.64□□□□□ -1.19
KDM3B-209ENST00000542866 PLPPR3Q6T4P5 718 aa7.64□□□□□ -1.19
KDM3B-209ENST00000542866 TOPBP1Q92547 1522 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms