RNA–Protein interactions for RNA: ENST00000540486.5

TRAPPC1-202, Transcript of trafficking protein particle complex 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene TRAPPC1, Length 759 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC1-202ENST00000540486 AEBP2Q6ZN18 517 aaPredicted RBP23.62■■□□□ 1.37
TRAPPC1-202ENST00000540486 CHIC1Q5VXU3 224 aa23.06■■□□□ 1.28
TRAPPC1-202ENST00000540486 NISCHQ9Y2I1 1504 aa22.57■■□□□ 1.2
TRAPPC1-202ENST00000540486 ABCC9O60706 1549 aa21.29■■□□□ 1
TRAPPC1-202ENST00000540486 DNAJC5BQ9UF47 199 aa20.7■□□□□ 0.9
TRAPPC1-202ENST00000540486 CCDC180Q9P1Z9 1646 aa20.52■□□□□ 0.88
TRAPPC1-202ENST00000540486 PHF23Q9BUL5 403 aaPredicted RBP20.27■□□□□ 0.84
TRAPPC1-202ENST00000540486 SENP3Q9H4L4 574 aaPredicted RBP20.07■□□□□ 0.8
TRAPPC1-202ENST00000540486 RB1CC1Q8TDY2 1594 aa19.95■□□□□ 0.78
TRAPPC1-202ENST00000540486 PABPN1Q86U42 306 aaKnown RBP eCLIP19.75■□□□□ 0.75
TRAPPC1-202ENST00000540486 NACADO15069 1562 aa19.66■□□□□ 0.74
TRAPPC1-202ENST00000540486 DNAJC5Q9H3Z4 198 aa19.63■□□□□ 0.73
TRAPPC1-202ENST00000540486 DCAF8L2P0C7V8 631 aa19.44■□□□□ 0.7
TRAPPC1-202ENST00000540486 BICRAQ9NZM4 1560 aa19.35■□□□□ 0.69
TRAPPC1-202ENST00000540486 UNC13AQ9UPW8 1703 aa19.34■□□□□ 0.69
TRAPPC1-202ENST00000540486 CECR2Q9BXF3 1484 aa19.29■□□□□ 0.68
TRAPPC1-202ENST00000540486 MYO15BQ96JP2 1530 aa19.18■□□□□ 0.66
TRAPPC1-202ENST00000540486 CC2D2AQ9P2K1 1620 aa19.17■□□□□ 0.66
TRAPPC1-202ENST00000540486 SHROOM4Q9ULL8 1493 aa19.12■□□□□ 0.65
TRAPPC1-202ENST00000540486 EIF4G1Q04637 1599 aaKnown RBP18.96■□□□□ 0.63
TRAPPC1-202ENST00000540486 CUX2O14529 1486 aa18.71■□□□□ 0.59
TRAPPC1-202ENST00000540486 PLPPR3Q6T4P5 718 aa18.71■□□□□ 0.59
TRAPPC1-202ENST00000540486 DCAF1Q9Y4B6 1507 aa18.64■□□□□ 0.57
TRAPPC1-202ENST00000540486 SCRIBQ14160 1630 aa18.63■□□□□ 0.57
TRAPPC1-202ENST00000540486 FOXD1Q16676 465 aa18.61■□□□□ 0.57
TRAPPC1-202ENST00000540486 ZCCHC6Q5VYS8 1495 aaKnown RBP18.52■□□□□ 0.56
TRAPPC1-202ENST00000540486 ERCC6Q03468 1493 aa18.46■□□□□ 0.55
TRAPPC1-202ENST00000540486 TRIM41Q8WV44 630 aa18.38■□□□□ 0.53
TRAPPC1-202ENST00000540486 NCAPD3P42695 1498 aa18.2■□□□□ 0.5
TRAPPC1-202ENST00000540486 NESP48681 1621 aa18.05■□□□□ 0.48
TRAPPC1-202ENST00000540486 ATAD2BQ9ULI0 1458 aa18■□□□□ 0.47
TRAPPC1-202ENST00000540486 THOC2Q8NI27 1593 aaKnown RBP17.99■□□□□ 0.47
TRAPPC1-202ENST00000540486 HMGXB3Q12766 1538 aa17.93■□□□□ 0.46
TRAPPC1-202ENST00000540486 SMARCA2P51531 1590 aa17.9■□□□□ 0.46
TRAPPC1-202ENST00000540486 PPP6R1Q9UPN7 881 aa17.87■□□□□ 0.45
TRAPPC1-202ENST00000540486 PDS5BQ9NTI5 1447 aa17.85■□□□□ 0.45
TRAPPC1-202ENST00000540486 LAMC3Q9Y6N6 1575 aa17.84■□□□□ 0.45
TRAPPC1-202ENST00000540486 ADRA2BP18089 450 aa17.82■□□□□ 0.44
TRAPPC1-202ENST00000540486 OSCARQ8IYS5 282 aa17.81■□□□□ 0.44
TRAPPC1-202ENST00000540486 BAZ1BQ9UIG0 1483 aaKnown RBP17.76■□□□□ 0.43
TRAPPC1-202ENST00000540486 SMARCA4P51532 1647 aa17.72■□□□□ 0.43
TRAPPC1-202ENST00000540486 KIF21AQ7Z4S6 1674 aa17.71■□□□□ 0.43
TRAPPC1-202ENST00000540486 BAZ1AQ9NRL2 1556 aaPredicted RBP17.67■□□□□ 0.42
TRAPPC1-202ENST00000540486 MRC2Q9UBG0 1479 aa17.67■□□□□ 0.42
TRAPPC1-202ENST00000540486 WDR62O43379 1518 aa17.62■□□□□ 0.41
TRAPPC1-202ENST00000540486 CADPSQ9ULU8 1353 aa17.62■□□□□ 0.41
TRAPPC1-202ENST00000540486 PEG3Q9GZU2 1588 aa17.6■□□□□ 0.41
TRAPPC1-202ENST00000540486 PIAS4Q8N2W9 510 aaPredicted RBP17.5■□□□□ 0.39
TRAPPC1-202ENST00000540486 RIMBP3CA6NJZ7 1639 aa17.49■□□□□ 0.39
TRAPPC1-202ENST00000540486 RIMBP3BA6NNM3 1639 aa17.49■□□□□ 0.39
TRAPPC1-202ENST00000540486 RIMBP3Q9UFD9 1639 aa17.49■□□□□ 0.39
TRAPPC1-202ENST00000540486 TRHP20396 242 aaPredicted RBP17.46■□□□□ 0.39
TRAPPC1-202ENST00000540486 CEP164Q9UPV0 1460 aa17.44■□□□□ 0.38
TRAPPC1-202ENST00000540486 CYB5RLQ6IPT4 315 aa17.41■□□□□ 0.38
TRAPPC1-202ENST00000540486 ARHGEF11O15085 1522 aa17.41■□□□□ 0.38
TRAPPC1-202ENST00000540486 FANCD2Q9BXW9 1451 aa17.37■□□□□ 0.37
TRAPPC1-202ENST00000540486 MROH2BQ7Z745 1585 aa17.35■□□□□ 0.37
TRAPPC1-202ENST00000540486 URB2Q14146 1524 aaKnown RBP17.23■□□□□ 0.35
TRAPPC1-202ENST00000540486 CFTRP13569 1480 aa17.23■□□□□ 0.35
TRAPPC1-202ENST00000540486 MSH5O43196 834 aa17.2■□□□□ 0.34
TRAPPC1-202ENST00000540486 ARAP1Q96P48 1450 aa17.18■□□□□ 0.34
TRAPPC1-202ENST00000540486 IFT140Q96RY7 1462 aa17.15■□□□□ 0.34
TRAPPC1-202ENST00000540486 ZNF608Q9ULD9 1512 aaPredicted RBP17.14■□□□□ 0.33
TRAPPC1-202ENST00000540486 RSF1Q96T23 1441 aaPredicted RBP17.12■□□□□ 0.33
TRAPPC1-202ENST00000540486 WIZO95785 1651 aa17.05■□□□□ 0.32
TRAPPC1-202ENST00000540486 FBLN2P98095 1184 aa17.01■□□□□ 0.31
TRAPPC1-202ENST00000540486 EIF4G3O43432 1585 aaKnown RBP16.95■□□□□ 0.3
TRAPPC1-202ENST00000540486 AQRO60306 1485 aaKnown RBP eCLIP16.93■□□□□ 0.32e-6■■■□□ 15.2
TRAPPC1-202ENST00000540486 TOPBP1Q92547 1522 aa16.93■□□□□ 0.3
TRAPPC1-202ENST00000540486 ABCC8Q09428 1581 aa16.93■□□□□ 0.3
TRAPPC1-202ENST00000540486 CHD1O14646 1710 aa16.93■□□□□ 0.3
TRAPPC1-202ENST00000540486 ILDR1Q86SU0 546 aaPredicted RBP16.85■□□□□ 0.29
TRAPPC1-202ENST00000540486 TOP2AP11388 1531 aaKnown RBP16.84■□□□□ 0.29
TRAPPC1-202ENST00000540486 PRDM2Q13029 1718 aa16.82■□□□□ 0.28
TRAPPC1-202ENST00000540486 TARBP1Q13395 1621 aaKnown RBP16.81■□□□□ 0.28
TRAPPC1-202ENST00000540486 CLASP1Q7Z460 1538 aa16.8■□□□□ 0.28
TRAPPC1-202ENST00000540486 CHMP7Q8WUX9 453 aaPredicted RBP16.8■□□□□ 0.28
TRAPPC1-202ENST00000540486 DNMBPQ6XZF7 1577 aa16.78■□□□□ 0.28
TRAPPC1-202ENST00000540486 SYNJ1O43426 1573 aa16.75■□□□□ 0.27
TRAPPC1-202ENST00000540486 GAPVD1Q14C86 1478 aa16.73■□□□□ 0.27
TRAPPC1-202ENST00000540486 TDRD9Q8NDG6 1382 aaKnown RBP16.72■□□□□ 0.27
TRAPPC1-202ENST00000540486 POLA1P09884 1462 aaPredicted RBP16.72■□□□□ 0.27
TRAPPC1-202ENST00000540486 SNAPC4Q5SXM2 1469 aa16.7■□□□□ 0.26
TRAPPC1-202ENST00000540486 CCDC88BA6NC98 1476 aa16.69■□□□□ 0.26
TRAPPC1-202ENST00000540486 SOGA1O94964 1423 aa16.68■□□□□ 0.26
TRAPPC1-202ENST00000540486 MAGI1Q96QZ7 1491 aaPredicted RBP16.67■□□□□ 0.26
TRAPPC1-202ENST00000540486 RAD54L2Q9Y4B4 1467 aa16.66■□□□□ 0.26
TRAPPC1-202ENST00000540486 WDR97A6NE52 1622 aa16.63■□□□□ 0.25
TRAPPC1-202ENST00000540486 SYNJ2O15056 1496 aa16.63■□□□□ 0.25
TRAPPC1-202ENST00000540486 GRIN2BQ13224 1484 aa16.61■□□□□ 0.25
TRAPPC1-202ENST00000540486 KDM4FA0A1W2PPD8 638 aa16.59■□□□□ 0.25
TRAPPC1-202ENST00000540486 FGD5Q6ZNL6 1462 aa16.48■□□□□ 0.23
TRAPPC1-202ENST00000540486 FAM69CQ0P6D2 419 aa16.46■□□□□ 0.23
TRAPPC1-202ENST00000540486 PPP4R3CPQ6ZMV5 832 aa16.46■□□□□ 0.23
TRAPPC1-202ENST00000540486 ERCC6L2Q5T890 1561 aa16.45■□□□□ 0.22
TRAPPC1-202ENST00000540486 KIF13AQ9H1H9 1805 aa16.45■□□□□ 0.22
TRAPPC1-202ENST00000540486 ABCC10Q5T3U5 1492 aa16.4■□□□□ 0.22
TRAPPC1-202ENST00000540486 CEP170Q5SW79 1584 aa16.39■□□□□ 0.21
TRAPPC1-202ENST00000540486 NPM1P06748 294 aaKnown RBP eCLIP16.38■□□□□ 0.21
TRAPPC1-202ENST00000540486 SCAF1Q9H7N4 1312 aaKnown RBP16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms