RNA–Protein interactions for RNA: ENST00000540301.1

KLHL42-203, Transcript of kelch like family member 42, humanhuman

TSL 3

Gene KLHL42, Length 793 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL42-203ENST00000540301 NISCHQ9Y2I1 1504 aa21.28■■□□□ 1
KLHL42-203ENST00000540301 ABCC9O60706 1549 aa20.07■□□□□ 0.8
KLHL42-203ENST00000540301 DNAJC5BQ9UF47 199 aa19.46■□□□□ 0.71
KLHL42-203ENST00000540301 CCDC180Q9P1Z9 1646 aa19.36■□□□□ 0.69
KLHL42-203ENST00000540301 RB1CC1Q8TDY2 1594 aa18.78■□□□□ 0.6
KLHL42-203ENST00000540301 PABPN1Q86U42 306 aaKnown RBP eCLIP18.62■□□□□ 0.57
KLHL42-203ENST00000540301 NACADO15069 1562 aa18.5■□□□□ 0.55
KLHL42-203ENST00000540301 DNAJC5Q9H3Z4 198 aa18.38■□□□□ 0.53
KLHL42-203ENST00000540301 DCAF8L2P0C7V8 631 aa18.34■□□□□ 0.53
KLHL42-203ENST00000540301 UNC13AQ9UPW8 1703 aa18.33■□□□□ 0.52
KLHL42-203ENST00000540301 BICRAQ9NZM4 1560 aa18.25■□□□□ 0.51
KLHL42-203ENST00000540301 CECR2Q9BXF3 1484 aa18.16■□□□□ 0.5
KLHL42-203ENST00000540301 CC2D2AQ9P2K1 1620 aa18.09■□□□□ 0.49
KLHL42-203ENST00000540301 MYO15BQ96JP2 1530 aa18■□□□□ 0.47
KLHL42-203ENST00000540301 SHROOM4Q9ULL8 1493 aa17.93■□□□□ 0.46
KLHL42-203ENST00000540301 EIF4G1Q04637 1599 aaKnown RBP17.87■□□□□ 0.45
KLHL42-203ENST00000540301 AEBP2Q6ZN18 517 aaPredicted RBP17.76■□□□□ 0.43
KLHL42-203ENST00000540301 SCRIBQ14160 1630 aa17.62■□□□□ 0.41
KLHL42-203ENST00000540301 CUX2O14529 1486 aa17.56■□□□□ 0.4
KLHL42-203ENST00000540301 DCAF1Q9Y4B6 1507 aa17.52■□□□□ 0.39
KLHL42-203ENST00000540301 ZCCHC6Q5VYS8 1495 aaKnown RBP17.48■□□□□ 0.39
KLHL42-203ENST00000540301 ERCC6Q03468 1493 aa17.39■□□□□ 0.37
KLHL42-203ENST00000540301 TRIM41Q8WV44 630 aa17.3■□□□□ 0.36
KLHL42-203ENST00000540301 NCAPD3P42695 1498 aa17.1■□□□□ 0.33
KLHL42-203ENST00000540301 NESP48681 1621 aa17.04■□□□□ 0.32
KLHL42-203ENST00000540301 THOC2Q8NI27 1593 aaKnown RBP16.98■□□□□ 0.31
KLHL42-203ENST00000540301 ATAD2BQ9ULI0 1458 aa16.94■□□□□ 0.3
KLHL42-203ENST00000540301 HMGXB3Q12766 1538 aa16.87■□□□□ 0.29
KLHL42-203ENST00000540301 SMARCA2P51531 1590 aa16.85■□□□□ 0.29
KLHL42-203ENST00000540301 LAMC3Q9Y6N6 1575 aa16.8■□□□□ 0.28
KLHL42-203ENST00000540301 KIF21AQ7Z4S6 1674 aa16.77■□□□□ 0.28
KLHL42-203ENST00000540301 PDS5BQ9NTI5 1447 aa16.76■□□□□ 0.27
KLHL42-203ENST00000540301 BAZ1BQ9UIG0 1483 aaKnown RBP16.74■□□□□ 0.27
KLHL42-203ENST00000540301 SMARCA4P51532 1647 aa16.74■□□□□ 0.27
KLHL42-203ENST00000540301 OSCARQ8IYS5 282 aa16.71■□□□□ 0.27
KLHL42-203ENST00000540301 BAZ1AQ9NRL2 1556 aaPredicted RBP16.68■□□□□ 0.26
KLHL42-203ENST00000540301 CHIC1Q5VXU3 224 aa16.66■□□□□ 0.26
KLHL42-203ENST00000540301 MRC2Q9UBG0 1479 aa16.64■□□□□ 0.25
KLHL42-203ENST00000540301 WDR62O43379 1518 aa16.6■□□□□ 0.25
KLHL42-203ENST00000540301 PEG3Q9GZU2 1588 aa16.56■□□□□ 0.24
KLHL42-203ENST00000540301 CADPSQ9ULU8 1353 aa16.55■□□□□ 0.24
KLHL42-203ENST00000540301 RIMBP3CA6NJZ7 1639 aa16.51■□□□□ 0.23
KLHL42-203ENST00000540301 RIMBP3BA6NNM3 1639 aa16.51■□□□□ 0.23
KLHL42-203ENST00000540301 RIMBP3Q9UFD9 1639 aa16.51■□□□□ 0.23
KLHL42-203ENST00000540301 CEP164Q9UPV0 1460 aa16.43■□□□□ 0.22
KLHL42-203ENST00000540301 TRHP20396 242 aaPredicted RBP16.41■□□□□ 0.22
KLHL42-203ENST00000540301 MROH2BQ7Z745 1585 aa16.39■□□□□ 0.21
KLHL42-203ENST00000540301 ARHGEF11O15085 1522 aa16.39■□□□□ 0.21
KLHL42-203ENST00000540301 CYB5RLQ6IPT4 315 aa16.37■□□□□ 0.21
KLHL42-203ENST00000540301 FANCD2Q9BXW9 1451 aa16.35■□□□□ 0.21
KLHL42-203ENST00000540301 URB2Q14146 1524 aaKnown RBP16.25■□□□□ 0.19
KLHL42-203ENST00000540301 CFTRP13569 1480 aa16.21■□□□□ 0.19
KLHL42-203ENST00000540301 ARAP1Q96P48 1450 aa16.18■□□□□ 0.18
KLHL42-203ENST00000540301 ZNF608Q9ULD9 1512 aaPredicted RBP16.18■□□□□ 0.18
KLHL42-203ENST00000540301 WIZO95785 1651 aa16.15■□□□□ 0.18
KLHL42-203ENST00000540301 IFT140Q96RY7 1462 aa16.14■□□□□ 0.17
KLHL42-203ENST00000540301 RSF1Q96T23 1441 aaPredicted RBP16.07■□□□□ 0.16
KLHL42-203ENST00000540301 CHD1O14646 1710 aa16.04■□□□□ 0.16
KLHL42-203ENST00000540301 FBLN2P98095 1184 aa16.03■□□□□ 0.16
KLHL42-203ENST00000540301 EIF4G3O43432 1585 aaKnown RBP16.03■□□□□ 0.16
KLHL42-203ENST00000540301 TOPBP1Q92547 1522 aa15.97■□□□□ 0.15
KLHL42-203ENST00000540301 AQRO60306 1485 aaKnown RBP eCLIP15.96■□□□□ 0.14
KLHL42-203ENST00000540301 PRDM2Q13029 1718 aa15.94■□□□□ 0.14
KLHL42-203ENST00000540301 TOP2AP11388 1531 aaKnown RBP15.89■□□□□ 0.13
KLHL42-203ENST00000540301 ABCC8Q09428 1581 aa15.89■□□□□ 0.13
KLHL42-203ENST00000540301 TARBP1Q13395 1621 aaKnown RBP15.86■□□□□ 0.13
KLHL42-203ENST00000540301 CLASP1Q7Z460 1538 aa15.84■□□□□ 0.13
KLHL42-203ENST00000540301 DNMBPQ6XZF7 1577 aa15.83■□□□□ 0.13
KLHL42-203ENST00000540301 ILDR1Q86SU0 546 aaPredicted RBP15.82■□□□□ 0.12
KLHL42-203ENST00000540301 CHMP7Q8WUX9 453 aaPredicted RBP15.79■□□□□ 0.12
KLHL42-203ENST00000540301 SYNJ1O43426 1573 aa15.79■□□□□ 0.12
KLHL42-203ENST00000540301 TDRD9Q8NDG6 1382 aaKnown RBP15.76■□□□□ 0.11
KLHL42-203ENST00000540301 POLA1P09884 1462 aaPredicted RBP15.76■□□□□ 0.11
KLHL42-203ENST00000540301 SNAPC4Q5SXM2 1469 aa15.76■□□□□ 0.11
KLHL42-203ENST00000540301 CCDC88BA6NC98 1476 aa15.75■□□□□ 0.11
KLHL42-203ENST00000540301 GAPVD1Q14C86 1478 aa15.75■□□□□ 0.11
KLHL42-203ENST00000540301 RAD54L2Q9Y4B4 1467 aa15.73■□□□□ 0.11
KLHL42-203ENST00000540301 SOGA1O94964 1423 aa15.69■□□□□ 0.1
KLHL42-203ENST00000540301 MAGI1Q96QZ7 1491 aaPredicted RBP15.69■□□□□ 0.1
KLHL42-203ENST00000540301 SYNJ2O15056 1496 aa15.65■□□□□ 0.1
KLHL42-203ENST00000540301 WDR97A6NE52 1622 aa15.64■□□□□ 0.09
KLHL42-203ENST00000540301 GRIN2BQ13224 1484 aa15.62■□□□□ 0.09
KLHL42-203ENST00000540301 KDM4FA0A1W2PPD8 638 aa15.58■□□□□ 0.08
KLHL42-203ENST00000540301 FGD5Q6ZNL6 1462 aa15.57■□□□□ 0.08
KLHL42-203ENST00000540301 KIF13AQ9H1H9 1805 aa15.56■□□□□ 0.08
KLHL42-203ENST00000540301 ERCC6L2Q5T890 1561 aa15.55■□□□□ 0.08
KLHL42-203ENST00000540301 PBRM1Q86U86 1689 aa15.48■□□□□ 0.07
KLHL42-203ENST00000540301 FAM69CQ0P6D2 419 aa15.47■□□□□ 0.07
KLHL42-203ENST00000540301 CEP170Q5SW79 1584 aa15.47■□□□□ 0.07
KLHL42-203ENST00000540301 CUX1P39880 1505 aa15.43■□□□□ 0.06
KLHL42-203ENST00000540301 GRIN2AQ12879 1464 aa15.41■□□□□ 0.06
KLHL42-203ENST00000540301 ABCC10Q5T3U5 1492 aa15.41■□□□□ 0.06
KLHL42-203ENST00000540301 KDM6BO15054 1643 aa15.39■□□□□ 0.05
KLHL42-203ENST00000540301 NUP160Q12769 1436 aa15.39■□□□□ 0.05
KLHL42-203ENST00000540301 SHROOM2Q13796 1616 aa15.38■□□□□ 0.05
KLHL42-203ENST00000540301 NPM1P06748 294 aaKnown RBP eCLIP15.37■□□□□ 0.05
KLHL42-203ENST00000540301 ABCA5Q8WWZ7 1642 aa15.36■□□□□ 0.05
KLHL42-203ENST00000540301 ABCA10Q8WWZ4 1543 aa15.34■□□□□ 0.05
KLHL42-203ENST00000540301 DIP2BQ9P265 1576 aa15.33■□□□□ 0.05
KLHL42-203ENST00000540301 MAPKBP1O60336 1514 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 166 ms