RNA–Protein interactions for RNA: ENST00000537358.1

CCDC170-202, Transcript of coiled-coil domain containing 170, humanhuman

TSL 3

Gene CCDC170, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC170-202ENST00000537358 NISCHQ9Y2I1 1504 aa24.36■■□□□ 1.49
CCDC170-202ENST00000537358 AEBP2Q6ZN18 517 aaPredicted RBP21.93■■□□□ 1.1
CCDC170-202ENST00000537358 CCDC180Q9P1Z9 1646 aa21.89■■□□□ 1.09
CCDC170-202ENST00000537358 ABCC9O60706 1549 aa21.75■■□□□ 1.07
CCDC170-202ENST00000537358 CHIC1Q5VXU3 224 aa21.59■■□□□ 1.05
CCDC170-202ENST00000537358 RB1CC1Q8TDY2 1594 aa20.8■□□□□ 0.92
CCDC170-202ENST00000537358 NACADO15069 1562 aa20.67■□□□□ 0.9
CCDC170-202ENST00000537358 DCAF8L2P0C7V8 631 aa20.59■□□□□ 0.89
CCDC170-202ENST00000537358 MYO15BQ96JP2 1530 aa20.38■□□□□ 0.85
CCDC170-202ENST00000537358 UNC13AQ9UPW8 1703 aa20.3■□□□□ 0.84
CCDC170-202ENST00000537358 PABPN1Q86U42 306 aaKnown RBP eCLIP20.24■□□□□ 0.83
CCDC170-202ENST00000537358 DNAJC5BQ9UF47 199 aa20.23■□□□□ 0.83
CCDC170-202ENST00000537358 ZCCHC6Q5VYS8 1495 aaKnown RBP20.2■□□□□ 0.82
CCDC170-202ENST00000537358 DCAF1Q9Y4B6 1507 aa20.15■□□□□ 0.82
CCDC170-202ENST00000537358 BICRAQ9NZM4 1560 aa20.09■□□□□ 0.81
CCDC170-202ENST00000537358 SHROOM4Q9ULL8 1493 aa19.93■□□□□ 0.78
CCDC170-202ENST00000537358 SCRIBQ14160 1630 aa19.91■□□□□ 0.78
CCDC170-202ENST00000537358 CC2D2AQ9P2K1 1620 aa19.67■□□□□ 0.74
CCDC170-202ENST00000537358 EIF4G1Q04637 1599 aaKnown RBP19.65■□□□□ 0.74
CCDC170-202ENST00000537358 CECR2Q9BXF3 1484 aa19.6■□□□□ 0.73
CCDC170-202ENST00000537358 NCAPD3P42695 1498 aa19.03■□□□□ 0.64
CCDC170-202ENST00000537358 SMARCA4P51532 1647 aa19■□□□□ 0.63
CCDC170-202ENST00000537358 SMARCA2P51531 1590 aa19■□□□□ 0.63
CCDC170-202ENST00000537358 ATAD2BQ9ULI0 1458 aa18.98■□□□□ 0.63
CCDC170-202ENST00000537358 BAZ1AQ9NRL2 1556 aaPredicted RBP18.95■□□□□ 0.62
CCDC170-202ENST00000537358 HMGXB3Q12766 1538 aa18.94■□□□□ 0.62
CCDC170-202ENST00000537358 PHF23Q9BUL5 403 aaPredicted RBP18.9■□□□□ 0.62
CCDC170-202ENST00000537358 ERCC6Q03468 1493 aa18.85■□□□□ 0.61
CCDC170-202ENST00000537358 BAZ1BQ9UIG0 1483 aaKnown RBP18.85■□□□□ 0.61
CCDC170-202ENST00000537358 PEG3Q9GZU2 1588 aa18.81■□□□□ 0.6
CCDC170-202ENST00000537358 CUX2O14529 1486 aa18.77■□□□□ 0.59
CCDC170-202ENST00000537358 SENP3Q9H4L4 574 aaPredicted RBP18.75■□□□□ 0.59
CCDC170-202ENST00000537358 MROH2BQ7Z745 1585 aa18.74■□□□□ 0.59
CCDC170-202ENST00000537358 NESP48681 1621 aa18.67■□□□□ 0.58
CCDC170-202ENST00000537358 LAMC3Q9Y6N6 1575 aa18.64■□□□□ 0.58
CCDC170-202ENST00000537358 DNAJC5Q9H3Z4 198 aa18.62■□□□□ 0.57
CCDC170-202ENST00000537358 WIZO95785 1651 aa18.55■□□□□ 0.56
CCDC170-202ENST00000537358 PDS5BQ9NTI5 1447 aa18.54■□□□□ 0.56
CCDC170-202ENST00000537358 THOC2Q8NI27 1593 aaKnown RBP18.51■□□□□ 0.55
CCDC170-202ENST00000537358 KIF21AQ7Z4S6 1674 aa18.5■□□□□ 0.55
CCDC170-202ENST00000537358 CADPSQ9ULU8 1353 aa18.47■□□□□ 0.55
CCDC170-202ENST00000537358 RSF1Q96T23 1441 aaPredicted RBP18.38■□□□□ 0.53
CCDC170-202ENST00000537358 MRC2Q9UBG0 1479 aa18.35■□□□□ 0.53
CCDC170-202ENST00000537358 TOP2AP11388 1531 aaKnown RBP18.34■□□□□ 0.53
CCDC170-202ENST00000537358 CEP164Q9UPV0 1460 aa18.31■□□□□ 0.52
CCDC170-202ENST00000537358 WDR62O43379 1518 aa18.28■□□□□ 0.52
CCDC170-202ENST00000537358 FANCD2Q9BXW9 1451 aa18.27■□□□□ 0.52
CCDC170-202ENST00000537358 CFTRP13569 1480 aa18.26■□□□□ 0.51
CCDC170-202ENST00000537358 PRDM2Q13029 1718 aa18.18■□□□□ 0.5
CCDC170-202ENST00000537358 CCDC88BA6NC98 1476 aa18.1■□□□□ 0.49
CCDC170-202ENST00000537358 URB2Q14146 1524 aaKnown RBP18.08■□□□□ 0.48
CCDC170-202ENST00000537358 ABCC8Q09428 1581 aa17.96■□□□□ 0.46
CCDC170-202ENST00000537358 OSCARQ8IYS5 282 aa17.93■□□□□ 0.46
CCDC170-202ENST00000537358 IFT140Q96RY7 1462 aa17.93■□□□□ 0.46
CCDC170-202ENST00000537358 TOPBP1Q92547 1522 aa17.92■□□□□ 0.46
CCDC170-202ENST00000537358 DNMBPQ6XZF7 1577 aa17.89■□□□□ 0.45
CCDC170-202ENST00000537358 TRIM41Q8WV44 630 aa17.88■□□□□ 0.45
CCDC170-202ENST00000537358 ZNF608Q9ULD9 1512 aaPredicted RBP17.82■□□□□ 0.44
CCDC170-202ENST00000537358 EIF4G3O43432 1585 aaKnown RBP17.79■□□□□ 0.44
CCDC170-202ENST00000537358 TARBP1Q13395 1621 aaKnown RBP17.75■□□□□ 0.43
CCDC170-202ENST00000537358 POLA1P09884 1462 aaPredicted RBP17.74■□□□□ 0.43
CCDC170-202ENST00000537358 AQRO60306 1485 aaKnown RBP eCLIP17.69■□□□□ 0.42
CCDC170-202ENST00000537358 SOGA1O94964 1423 aa17.68■□□□□ 0.42
CCDC170-202ENST00000537358 SUPT5HO00267 1087 aaKnown RBP17.67■□□□□ 0.42
CCDC170-202ENST00000537358 CHD1O14646 1710 aa17.67■□□□□ 0.42
CCDC170-202ENST00000537358 RIMBP3CA6NJZ7 1639 aa17.65■□□□□ 0.42
CCDC170-202ENST00000537358 RIMBP3BA6NNM3 1639 aa17.65■□□□□ 0.42
CCDC170-202ENST00000537358 RIMBP3Q9UFD9 1639 aa17.65■□□□□ 0.42
CCDC170-202ENST00000537358 WDR97A6NE52 1622 aa17.65■□□□□ 0.42
CCDC170-202ENST00000537358 FGD5Q6ZNL6 1462 aa17.64■□□□□ 0.41
CCDC170-202ENST00000537358 RAD54L2Q9Y4B4 1467 aa17.64■□□□□ 0.41
CCDC170-202ENST00000537358 FBLN2P98095 1184 aa17.63■□□□□ 0.41
CCDC170-202ENST00000537358 CUX1P39880 1505 aa17.62■□□□□ 0.41
CCDC170-202ENST00000537358 PLPPR3Q6T4P5 718 aa17.61■□□□□ 0.41
CCDC170-202ENST00000537358 ARHGEF11O15085 1522 aa17.61■□□□□ 0.41
CCDC170-202ENST00000537358 TDRD9Q8NDG6 1382 aaKnown RBP17.6■□□□□ 0.41
CCDC170-202ENST00000537358 SNAPC4Q5SXM2 1469 aa17.55■□□□□ 0.4
CCDC170-202ENST00000537358 GRIN2BQ13224 1484 aa17.53■□□□□ 0.4
CCDC170-202ENST00000537358 MAGI1Q96QZ7 1491 aaPredicted RBP17.53■□□□□ 0.4
CCDC170-202ENST00000537358 CHMP7Q8WUX9 453 aaPredicted RBP17.52■□□□□ 0.4
CCDC170-202ENST00000537358 SYNJ1O43426 1573 aa17.49■□□□□ 0.39
CCDC170-202ENST00000537358 PBRM1Q86U86 1689 aa17.48■□□□□ 0.39
CCDC170-202ENST00000537358 CYB5RLQ6IPT4 315 aa17.48■□□□□ 0.39
CCDC170-202ENST00000537358 GAPVD1Q14C86 1478 aa17.48■□□□□ 0.39
CCDC170-202ENST00000537358 SYNJ2O15056 1496 aa17.46■□□□□ 0.39
CCDC170-202ENST00000537358 ABCA10Q8WWZ4 1543 aa17.46■□□□□ 0.39
CCDC170-202ENST00000537358 WRNQ14191 1432 aaPredicted RBP eCLIP17.43■□□□□ 0.38
CCDC170-202ENST00000537358 ABCA5Q8WWZ7 1642 aa17.42■□□□□ 0.38
CCDC170-202ENST00000537358 CLASP1Q7Z460 1538 aa17.42■□□□□ 0.38
CCDC170-202ENST00000537358 ARAP1Q96P48 1450 aa17.41■□□□□ 0.38
CCDC170-202ENST00000537358 BIVM-ERCC5R4GMW8 1640 aa17.4■□□□□ 0.38
CCDC170-202ENST00000537358 TOP2BQ02880 1626 aa17.39■□□□□ 0.38
CCDC170-202ENST00000537358 TRHP20396 242 aaPredicted RBP17.31■□□□□ 0.36
CCDC170-202ENST00000537358 ADAMTS12P58397 1594 aa17.29■□□□□ 0.36
CCDC170-202ENST00000537358 GRIN2AQ12879 1464 aa17.29■□□□□ 0.36
CCDC170-202ENST00000537358 FOXD1Q16676 465 aa17.28■□□□□ 0.36
CCDC170-202ENST00000537358 ERICH3Q5RHP9 1530 aa17.26■□□□□ 0.35
CCDC170-202ENST00000537358 FHAD1B1AJZ9 1412 aa17.25■□□□□ 0.35
CCDC170-202ENST00000537358 NUP160Q12769 1436 aa17.21■□□□□ 0.34
CCDC170-202ENST00000537358 CEP170Q5SW79 1584 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms