RNA–Protein interactions for RNA: ENST00000535406.5

CDCA3-204, Transcript of cell division cycle associated 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CDCA3, Length 1,327 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3-204ENST00000535406 NISCHQ9Y2I1 1504 aa23.22■■□□□ 1.31
CDCA3-204ENST00000535406 CCDC180Q9P1Z9 1646 aa20.76■□□□□ 0.91
CDCA3-204ENST00000535406 CHIC1Q5VXU3 224 aa20.53■□□□□ 0.88
CDCA3-204ENST00000535406 ABCC9O60706 1549 aa20.42■□□□□ 0.86
CDCA3-204ENST00000535406 AEBP2Q6ZN18 517 aaPredicted RBP20.27■□□□□ 0.83
CDCA3-204ENST00000535406 RB1CC1Q8TDY2 1594 aa19.6■□□□□ 0.73
CDCA3-204ENST00000535406 NACADO15069 1562 aa19.53■□□□□ 0.72
CDCA3-204ENST00000535406 DCAF8L2P0C7V8 631 aa19.42■□□□□ 0.7
CDCA3-204ENST00000535406 MYO15BQ96JP2 1530 aa19.35■□□□□ 0.69
CDCA3-204ENST00000535406 ZCCHC6Q5VYS8 1495 aaKnown RBP19.33■□□□□ 0.69
CDCA3-204ENST00000535406 DCAF1Q9Y4B6 1507 aa19.21■□□□□ 0.67
CDCA3-204ENST00000535406 UNC13AQ9UPW8 1703 aa19.16■□□□□ 0.66
CDCA3-204ENST00000535406 PABPN1Q86U42 306 aaKnown RBP eCLIP19.01■□□□□ 0.63
CDCA3-204ENST00000535406 BICRAQ9NZM4 1560 aa18.98■□□□□ 0.63
CDCA3-204ENST00000535406 SCRIBQ14160 1630 aa18.92■□□□□ 0.62
CDCA3-204ENST00000535406 SHROOM4Q9ULL8 1493 aa18.82■□□□□ 0.6
CDCA3-204ENST00000535406 DNAJC5BQ9UF47 199 aa18.81■□□□□ 0.6
CDCA3-204ENST00000535406 EIF4G1Q04637 1599 aaKnown RBP18.52■□□□□ 0.55
CDCA3-204ENST00000535406 CC2D2AQ9P2K1 1620 aa18.48■□□□□ 0.55
CDCA3-204ENST00000535406 CECR2Q9BXF3 1484 aa18.37■□□□□ 0.53
CDCA3-204ENST00000535406 PHF23Q9BUL5 403 aaPredicted RBP18.1■□□□□ 0.49
CDCA3-204ENST00000535406 SMARCA4P51532 1647 aa18.07■□□□□ 0.48
CDCA3-204ENST00000535406 BAZ1AQ9NRL2 1556 aaPredicted RBP18.03■□□□□ 0.48
CDCA3-204ENST00000535406 NCAPD3P42695 1498 aa17.99■□□□□ 0.47
CDCA3-204ENST00000535406 ATAD2BQ9ULI0 1458 aa17.99■□□□□ 0.47
CDCA3-204ENST00000535406 SMARCA2P51531 1590 aa17.99■□□□□ 0.47
CDCA3-204ENST00000535406 HMGXB3Q12766 1538 aa17.93■□□□□ 0.46
CDCA3-204ENST00000535406 PEG3Q9GZU2 1588 aa17.89■□□□□ 0.45
CDCA3-204ENST00000535406 MROH2BQ7Z745 1585 aa17.89■□□□□ 0.45
CDCA3-204ENST00000535406 BAZ1BQ9UIG0 1483 aaKnown RBP17.86■□□□□ 0.45
CDCA3-204ENST00000535406 WIZO95785 1651 aa17.7■□□□□ 0.42
CDCA3-204ENST00000535406 ERCC6Q03468 1493 aa17.63■□□□□ 0.41
CDCA3-204ENST00000535406 RSF1Q96T23 1441 aaPredicted RBP17.62■□□□□ 0.41
CDCA3-204ENST00000535406 NESP48681 1621 aa17.61■□□□□ 0.41
CDCA3-204ENST00000535406 LAMC3Q9Y6N6 1575 aa17.58■□□□□ 0.41
CDCA3-204ENST00000535406 TOP2AP11388 1531 aaKnown RBP17.52■□□□□ 0.4
CDCA3-204ENST00000535406 CUX2O14529 1486 aa17.5■□□□□ 0.39
CDCA3-204ENST00000535406 CADPSQ9ULU8 1353 aa17.46■□□□□ 0.39
CDCA3-204ENST00000535406 PDS5BQ9NTI5 1447 aa17.44■□□□□ 0.38
CDCA3-204ENST00000535406 KIF21AQ7Z4S6 1674 aa17.44■□□□□ 0.38
CDCA3-204ENST00000535406 THOC2Q8NI27 1593 aaKnown RBP17.43■□□□□ 0.38
CDCA3-204ENST00000535406 CFTRP13569 1480 aa17.33■□□□□ 0.37
CDCA3-204ENST00000535406 MRC2Q9UBG0 1479 aa17.29■□□□□ 0.36
CDCA3-204ENST00000535406 FANCD2Q9BXW9 1451 aa17.28■□□□□ 0.36
CDCA3-204ENST00000535406 CEP164Q9UPV0 1460 aa17.28■□□□□ 0.36
CDCA3-204ENST00000535406 CCDC88BA6NC98 1476 aa17.28■□□□□ 0.36
CDCA3-204ENST00000535406 WDR62O43379 1518 aa17.25■□□□□ 0.35
CDCA3-204ENST00000535406 PRDM2Q13029 1718 aa17.25■□□□□ 0.35
CDCA3-204ENST00000535406 SENP3Q9H4L4 574 aaPredicted RBP17.14■□□□□ 0.33
CDCA3-204ENST00000535406 URB2Q14146 1524 aaKnown RBP17.11■□□□□ 0.33
CDCA3-204ENST00000535406 DNAJC5Q9H3Z4 198 aa17.07■□□□□ 0.32
CDCA3-204ENST00000535406 SUPT5HO00267 1087 aaKnown RBP17.03■□□□□ 0.32
CDCA3-204ENST00000535406 PLPPR3Q6T4P5 718 aa16.99■□□□□ 0.31
CDCA3-204ENST00000535406 TOPBP1Q92547 1522 aa16.99■□□□□ 0.31
CDCA3-204ENST00000535406 ABCC8Q09428 1581 aa16.97■□□□□ 0.31
CDCA3-204ENST00000535406 DNMBPQ6XZF7 1577 aa16.97■□□□□ 0.31
CDCA3-204ENST00000535406 IFT140Q96RY7 1462 aa16.92■□□□□ 0.3
CDCA3-204ENST00000535406 ZNF608Q9ULD9 1512 aaPredicted RBP16.85■□□□□ 0.29
CDCA3-204ENST00000535406 POLA1P09884 1462 aaPredicted RBP16.84■□□□□ 0.29
CDCA3-204ENST00000535406 EIF4G3O43432 1585 aaKnown RBP16.82■□□□□ 0.28
CDCA3-204ENST00000535406 TARBP1Q13395 1621 aaKnown RBP16.81■□□□□ 0.28
CDCA3-204ENST00000535406 CUX1P39880 1505 aa16.8■□□□□ 0.28
CDCA3-204ENST00000535406 FGD5Q6ZNL6 1462 aa16.78■□□□□ 0.28
CDCA3-204ENST00000535406 RAD54L2Q9Y4B4 1467 aa16.75■□□□□ 0.27
CDCA3-204ENST00000535406 SOGA1O94964 1423 aa16.74■□□□□ 0.27
CDCA3-204ENST00000535406 AQRO60306 1485 aaKnown RBP eCLIP16.72■□□□□ 0.277e-7■■■■□ 24.1
CDCA3-204ENST00000535406 WDR97A6NE52 1622 aa16.7■□□□□ 0.26
CDCA3-204ENST00000535406 OSCARQ8IYS5 282 aa16.69■□□□□ 0.26
CDCA3-204ENST00000535406 TDRD9Q8NDG6 1382 aaKnown RBP16.66■□□□□ 0.26
CDCA3-204ENST00000535406 WRNQ14191 1432 aaPredicted RBP eCLIP16.63■□□□□ 0.25
CDCA3-204ENST00000535406 TOP2BQ02880 1626 aa16.63■□□□□ 0.25
CDCA3-204ENST00000535406 BIVM-ERCC5R4GMW8 1640 aa16.63■□□□□ 0.25
CDCA3-204ENST00000535406 CHD1O14646 1710 aa16.63■□□□□ 0.25
CDCA3-204ENST00000535406 SYNJ1O43426 1573 aa16.62■□□□□ 0.25
CDCA3-204ENST00000535406 ABCA10Q8WWZ4 1543 aa16.61■□□□□ 0.25
CDCA3-204ENST00000535406 SNAPC4Q5SXM2 1469 aa16.59■□□□□ 0.25
CDCA3-204ENST00000535406 GRIN2BQ13224 1484 aa16.59■□□□□ 0.25
CDCA3-204ENST00000535406 PBRM1Q86U86 1689 aa16.58■□□□□ 0.24
CDCA3-204ENST00000535406 ABCA5Q8WWZ7 1642 aa16.57■□□□□ 0.24
CDCA3-204ENST00000535406 MAGI1Q96QZ7 1491 aaPredicted RBP16.57■□□□□ 0.24
CDCA3-204ENST00000535406 GAPVD1Q14C86 1478 aa16.56■□□□□ 0.24
CDCA3-204ENST00000535406 FBLN2P98095 1184 aa16.55■□□□□ 0.24
CDCA3-204ENST00000535406 SYNJ2O15056 1496 aa16.5■□□□□ 0.23
CDCA3-204ENST00000535406 RIMBP3CA6NJZ7 1639 aa16.5■□□□□ 0.23
CDCA3-204ENST00000535406 RIMBP3BA6NNM3 1639 aa16.5■□□□□ 0.23
CDCA3-204ENST00000535406 RIMBP3Q9UFD9 1639 aa16.5■□□□□ 0.23
CDCA3-204ENST00000535406 ARHGEF11O15085 1522 aa16.48■□□□□ 0.23
CDCA3-204ENST00000535406 CHMP7Q8WUX9 453 aaPredicted RBP16.47■□□□□ 0.23
CDCA3-204ENST00000535406 TRIM41Q8WV44 630 aa16.47■□□□□ 0.23
CDCA3-204ENST00000535406 ADAMTS12P58397 1594 aa16.44■□□□□ 0.22
CDCA3-204ENST00000535406 CLASP1Q7Z460 1538 aa16.44■□□□□ 0.22
CDCA3-204ENST00000535406 ERICH3Q5RHP9 1530 aa16.41■□□□□ 0.22
CDCA3-204ENST00000535406 GRIN2AQ12879 1464 aa16.38■□□□□ 0.21
CDCA3-204ENST00000535406 FHAD1B1AJZ9 1412 aa16.36■□□□□ 0.21
CDCA3-204ENST00000535406 ARAP1Q96P48 1450 aa16.33■□□□□ 0.2
CDCA3-204ENST00000535406 CEP170Q5SW79 1584 aa16.31■□□□□ 0.2
CDCA3-204ENST00000535406 NUP160Q12769 1436 aa16.3■□□□□ 0.2
CDCA3-204ENST00000535406 KIF27Q86VH2 1401 aa16.3■□□□□ 0.2
CDCA3-204ENST00000535406 CYB5RLQ6IPT4 315 aa16.28■□□□□ 0.2
CDCA3-204ENST00000535406 CUL7Q14999 1698 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms