RNA–Protein interactions for RNA: ENST00000525211.5

CD44-214, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 747 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-214ENST00000525211 AEBP2Q6ZN18 517 aaPredicted RBP16.07■□□□□ 0.16
CD44-214ENST00000525211 CHIC1Q5VXU3 224 aa15.95■□□□□ 0.14
CD44-214ENST00000525211 NISCHQ9Y2I1 1504 aa15.53■□□□□ 0.08
CD44-214ENST00000525211 PHF23Q9BUL5 403 aaPredicted RBP14.1□□□□□ -0.15
CD44-214ENST00000525211 CCDC180Q9P1Z9 1646 aa13.61□□□□□ -0.23
CD44-214ENST00000525211 SENP3Q9H4L4 574 aaPredicted RBP13.53□□□□□ -0.24
CD44-214ENST00000525211 ABCC9O60706 1549 aa13.3□□□□□ -0.28
CD44-214ENST00000525211 PLPPR3Q6T4P5 718 aa13.07□□□□□ -0.32
CD44-214ENST00000525211 ZCCHC6Q5VYS8 1495 aaKnown RBP12.97□□□□□ -0.33
CD44-214ENST00000525211 DCAF8L2P0C7V8 631 aa12.94□□□□□ -0.34
CD44-214ENST00000525211 DCAF1Q9Y4B6 1507 aa12.78□□□□□ -0.36
CD44-214ENST00000525211 NACADO15069 1562 aa12.77□□□□□ -0.36
CD44-214ENST00000525211 RB1CC1Q8TDY2 1594 aa12.74□□□□□ -0.37
CD44-214ENST00000525211 MYO15BQ96JP2 1530 aa12.73□□□□□ -0.37
CD44-214ENST00000525211 SCRIBQ14160 1630 aa12.56□□□□□ -0.4
CD44-214ENST00000525211 FOXD1Q16676 465 aa12.55□□□□□ -0.4
CD44-214ENST00000525211 UNC13AQ9UPW8 1703 aa12.54□□□□□ -0.4
CD44-214ENST00000525211 PABPN1Q86U42 306 aaKnown RBP eCLIP12.52□□□□□ -0.41
CD44-214ENST00000525211 SHROOM4Q9ULL8 1493 aa12.51□□□□□ -0.41
CD44-214ENST00000525211 BICRAQ9NZM4 1560 aa12.49□□□□□ -0.41
CD44-214ENST00000525211 ADRA2BP18089 450 aa12.35□□□□□ -0.43
CD44-214ENST00000525211 PPP6R1Q9UPN7 881 aa12.35□□□□□ -0.43
CD44-214ENST00000525211 CECR2Q9BXF3 1484 aa12.18□□□□□ -0.46
CD44-214ENST00000525211 DNAJC5BQ9UF47 199 aa12.17□□□□□ -0.46
CD44-214ENST00000525211 EIF4G1Q04637 1599 aaKnown RBP12.07□□□□□ -0.48
CD44-214ENST00000525211 MROH2BQ7Z745 1585 aa12.04□□□□□ -0.48
CD44-214ENST00000525211 SMARCA4P51532 1647 aa12□□□□□ -0.49
CD44-214ENST00000525211 CC2D2AQ9P2K1 1620 aa12□□□□□ -0.49
CD44-214ENST00000525211 BAZ1AQ9NRL2 1556 aaPredicted RBP11.96□□□□□ -0.5
CD44-214ENST00000525211 RSF1Q96T23 1441 aaPredicted RBP11.95□□□□□ -0.5
CD44-214ENST00000525211 ATAD2BQ9ULI0 1458 aa11.91□□□□□ -0.5
CD44-214ENST00000525211 PIAS4Q8N2W9 510 aaPredicted RBP11.9□□□□□ -0.5
CD44-214ENST00000525211 WIZO95785 1651 aa11.9□□□□□ -0.5
CD44-214ENST00000525211 NCAPD3P42695 1498 aa11.84□□□□□ -0.51
CD44-214ENST00000525211 PEG3Q9GZU2 1588 aa11.84□□□□□ -0.51
CD44-214ENST00000525211 SUPT5HO00267 1087 aaKnown RBP11.82□□□□□ -0.52
CD44-214ENST00000525211 SMARCA2P51531 1590 aa11.81□□□□□ -0.52
CD44-214ENST00000525211 BAZ1BQ9UIG0 1483 aaKnown RBP11.77□□□□□ -0.52
CD44-214ENST00000525211 HMGXB3Q12766 1538 aa11.76□□□□□ -0.53
CD44-214ENST00000525211 TOP2AP11388 1531 aaKnown RBP11.71□□□□□ -0.53
CD44-214ENST00000525211 KCNA4P22459 653 aa11.67□□□□□ -0.54
CD44-214ENST00000525211 CCDC88BA6NC98 1476 aa11.64□□□□□ -0.55
CD44-214ENST00000525211 NESP48681 1621 aa11.61□□□□□ -0.55
CD44-214ENST00000525211 PPP4R3CPQ6ZMV5 832 aa11.58□□□□□ -0.56
CD44-214ENST00000525211 DNAJC5Q9H3Z4 198 aa11.53□□□□□ -0.56
CD44-214ENST00000525211 CADPSQ9ULU8 1353 aa11.52□□□□□ -0.57
CD44-214ENST00000525211 CFTRP13569 1480 aa11.49□□□□□ -0.57
CD44-214ENST00000525211 LAMC3Q9Y6N6 1575 aa11.44□□□□□ -0.58
CD44-214ENST00000525211 MSH5O43196 834 aa11.42□□□□□ -0.58
CD44-214ENST00000525211 FANCD2Q9BXW9 1451 aa11.39□□□□□ -0.59
CD44-214ENST00000525211 KIF21AQ7Z4S6 1674 aa11.39□□□□□ -0.59
CD44-214ENST00000525211 PDS5BQ9NTI5 1447 aa11.36□□□□□ -0.59
CD44-214ENST00000525211 ERCC6Q03468 1493 aa11.35□□□□□ -0.59
CD44-214ENST00000525211 NCBP3Q53F19 620 aaKnown RBP11.33□□□□□ -0.6
CD44-214ENST00000525211 CEP164Q9UPV0 1460 aa11.32□□□□□ -0.6
CD44-214ENST00000525211 PRDM2Q13029 1718 aa11.32□□□□□ -0.6
CD44-214ENST00000525211 URB2Q14146 1524 aaKnown RBP11.32□□□□□ -0.6
CD44-214ENST00000525211 THOC2Q8NI27 1593 aaKnown RBP11.31□□□□□ -0.6
CD44-214ENST00000525211 ABCC8Q09428 1581 aa11.3□□□□□ -0.6
CD44-214ENST00000525211 MRC2Q9UBG0 1479 aa11.27□□□□□ -0.6
CD44-214ENST00000525211 CUX1P39880 1505 aa11.27□□□□□ -0.61
CD44-214ENST00000525211 TOPBP1Q92547 1522 aa11.25□□□□□ -0.61
CD44-214ENST00000525211 SCAF1Q9H7N4 1312 aaKnown RBP11.23□□□□□ -0.61
CD44-214ENST00000525211 WDR62O43379 1518 aa11.23□□□□□ -0.61
CD44-214ENST00000525211 SYNJ1O43426 1573 aa11.22□□□□□ -0.61
CD44-214ENST00000525211 NPM3O75607 178 aaKnown RBP11.21□□□□□ -0.61
CD44-214ENST00000525211 EHMT2Q96KQ7 1210 aa11.21□□□□□ -0.61
CD44-214ENST00000525211 WRNQ14191 1432 aaPredicted RBP eCLIP11.2□□□□□ -0.62
CD44-214ENST00000525211 DNMBPQ6XZF7 1577 aa11.2□□□□□ -0.62
CD44-214ENST00000525211 CUX2O14529 1486 aa11.19□□□□□ -0.62
CD44-214ENST00000525211 RAD54L2Q9Y4B4 1467 aa11.18□□□□□ -0.62
CD44-214ENST00000525211 CNKSR2Q8WXI2 1034 aa11.17□□□□□ -0.62
CD44-214ENST00000525211 POLA1P09884 1462 aaPredicted RBP11.17□□□□□ -0.62
CD44-214ENST00000525211 FGD5Q6ZNL6 1462 aa11.16□□□□□ -0.62
CD44-214ENST00000525211 SLC4A1APQ9BWU0 796 aaKnown RBP11.15□□□□□ -0.62
CD44-214ENST00000525211 TOP2BQ02880 1626 aa11.14□□□□□ -0.63
CD44-214ENST00000525211 BIVM-ERCC5R4GMW8 1640 aa11.14□□□□□ -0.63
CD44-214ENST00000525211 MAPK8IP2Q13387 824 aaPredicted RBP11.13□□□□□ -0.63
CD44-214ENST00000525211 ZNF608Q9ULD9 1512 aaPredicted RBP11.13□□□□□ -0.63
CD44-214ENST00000525211 SOGA1O94964 1423 aa11.1□□□□□ -0.63
CD44-214ENST00000525211 TARBP1Q13395 1621 aaKnown RBP11.1□□□□□ -0.63
CD44-214ENST00000525211 TDRD9Q8NDG6 1382 aaKnown RBP11.08□□□□□ -0.64
CD44-214ENST00000525211 IFT140Q96RY7 1462 aa11.07□□□□□ -0.64
CD44-214ENST00000525211 TRIM41Q8WV44 630 aa11.07□□□□□ -0.64
CD44-214ENST00000525211 AQRO60306 1485 aaKnown RBP eCLIP11.06□□□□□ -0.64
CD44-214ENST00000525211 RUSC2Q8N2Y8 1516 aa11.06□□□□□ -0.64
CD44-214ENST00000525211 WDR97A6NE52 1622 aa11.04□□□□□ -0.64
CD44-214ENST00000525211 ABCA10Q8WWZ4 1543 aa11.04□□□□□ -0.64
CD44-214ENST00000525211 EIF4G3O43432 1585 aaKnown RBP11□□□□□ -0.65
CD44-214ENST00000525211 ABCA5Q8WWZ7 1642 aa10.98□□□□□ -0.65
CD44-214ENST00000525211 GAPVD1Q14C86 1478 aa10.97□□□□□ -0.65
CD44-214ENST00000525211 IGF1RP08069 1367 aa10.94□□□□□ -0.66
CD44-214ENST00000525211 FAM9AQ8IZU1 332 aaPredicted RBP10.94□□□□□ -0.66
CD44-214ENST00000525211 CSRNP3Q8WYN3 585 aa10.94□□□□□ -0.66
CD44-214ENST00000525211 SNAPC4Q5SXM2 1469 aa10.93□□□□□ -0.66
CD44-214ENST00000525211 GRIN2BQ13224 1484 aa10.92□□□□□ -0.66
CD44-214ENST00000525211 KIF27Q86VH2 1401 aa10.92□□□□□ -0.66
CD44-214ENST00000525211 PBRM1Q86U86 1689 aa10.91□□□□□ -0.66
CD44-214ENST00000525211 RNF216Q9NWF9 866 aaPredicted RBP10.88□□□□□ -0.67
CD44-214ENST00000525211 ERICH3Q5RHP9 1530 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms