RNA–Protein interactions for RNA: ENST00000518098.1

LINCR-0001-202, humanhuman

TSL 4 BASIC

Gene LINCR-0001, Length 524 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINCR-0001-202ENST00000518098 NISCHQ9Y2I1 1504 aa15.12■□□□□ 0.01
LINCR-0001-202ENST00000518098 ABCC9O60706 1549 aa13.94□□□□□ -0.18
LINCR-0001-202ENST00000518098 CCDC180Q9P1Z9 1646 aa13.72□□□□□ -0.21
LINCR-0001-202ENST00000518098 DNAJC5BQ9UF47 199 aa13.3□□□□□ -0.28
LINCR-0001-202ENST00000518098 RB1CC1Q8TDY2 1594 aa13.26□□□□□ -0.29
LINCR-0001-202ENST00000518098 NACADO15069 1562 aa13.12□□□□□ -0.31
LINCR-0001-202ENST00000518098 PABPN1Q86U42 306 aaKnown RBP eCLIP12.93□□□□□ -0.34
LINCR-0001-202ENST00000518098 MYO15BQ96JP2 1530 aa12.92□□□□□ -0.34
LINCR-0001-202ENST00000518098 DCAF8L2P0C7V8 631 aa12.91□□□□□ -0.34
LINCR-0001-202ENST00000518098 SHROOM4Q9ULL8 1493 aa12.84□□□□□ -0.35
LINCR-0001-202ENST00000518098 BICRAQ9NZM4 1560 aa12.72□□□□□ -0.37
LINCR-0001-202ENST00000518098 CECR2Q9BXF3 1484 aa12.67□□□□□ -0.38
LINCR-0001-202ENST00000518098 UNC13AQ9UPW8 1703 aa12.65□□□□□ -0.38
LINCR-0001-202ENST00000518098 DNAJC5Q9H3Z4 198 aa12.65□□□□□ -0.38
LINCR-0001-202ENST00000518098 DCAF1Q9Y4B6 1507 aa12.59□□□□□ -0.39
LINCR-0001-202ENST00000518098 CC2D2AQ9P2K1 1620 aa12.57□□□□□ -0.4
LINCR-0001-202ENST00000518098 AEBP2Q6ZN18 517 aaPredicted RBP12.55□□□□□ -0.4
LINCR-0001-202ENST00000518098 EIF4G1Q04637 1599 aaKnown RBP12.52□□□□□ -0.41
LINCR-0001-202ENST00000518098 ZCCHC6Q5VYS8 1495 aaKnown RBP12.46□□□□□ -0.42
LINCR-0001-202ENST00000518098 SCRIBQ14160 1630 aa12.37□□□□□ -0.43
LINCR-0001-202ENST00000518098 CUX2O14529 1486 aa12.33□□□□□ -0.44
LINCR-0001-202ENST00000518098 ERCC6Q03468 1493 aa12.18□□□□□ -0.46
LINCR-0001-202ENST00000518098 NCAPD3P42695 1498 aa12.13□□□□□ -0.47
LINCR-0001-202ENST00000518098 CHIC1Q5VXU3 224 aa12.05□□□□□ -0.48
LINCR-0001-202ENST00000518098 SMARCA2P51531 1590 aa11.98□□□□□ -0.49
LINCR-0001-202ENST00000518098 HMGXB3Q12766 1538 aa11.97□□□□□ -0.49
LINCR-0001-202ENST00000518098 ATAD2BQ9ULI0 1458 aa11.96□□□□□ -0.49
LINCR-0001-202ENST00000518098 PDS5BQ9NTI5 1447 aa11.9□□□□□ -0.5
LINCR-0001-202ENST00000518098 LAMC3Q9Y6N6 1575 aa11.88□□□□□ -0.51
LINCR-0001-202ENST00000518098 TRIM41Q8WV44 630 aa11.86□□□□□ -0.51
LINCR-0001-202ENST00000518098 BAZ1BQ9UIG0 1483 aaKnown RBP11.86□□□□□ -0.51
LINCR-0001-202ENST00000518098 BAZ1AQ9NRL2 1556 aaPredicted RBP11.82□□□□□ -0.52
LINCR-0001-202ENST00000518098 NESP48681 1621 aa11.82□□□□□ -0.52
LINCR-0001-202ENST00000518098 SMARCA4P51532 1647 aa11.81□□□□□ -0.52
LINCR-0001-202ENST00000518098 THOC2Q8NI27 1593 aaKnown RBP11.79□□□□□ -0.52
LINCR-0001-202ENST00000518098 PEG3Q9GZU2 1588 aa11.79□□□□□ -0.52
LINCR-0001-202ENST00000518098 OSCARQ8IYS5 282 aa11.74□□□□□ -0.53
LINCR-0001-202ENST00000518098 CADPSQ9ULU8 1353 aa11.74□□□□□ -0.53
LINCR-0001-202ENST00000518098 MRC2Q9UBG0 1479 aa11.71□□□□□ -0.53
LINCR-0001-202ENST00000518098 WDR62O43379 1518 aa11.66□□□□□ -0.54
LINCR-0001-202ENST00000518098 KIF21AQ7Z4S6 1674 aa11.62□□□□□ -0.55
LINCR-0001-202ENST00000518098 CEP164Q9UPV0 1460 aa11.61□□□□□ -0.55
LINCR-0001-202ENST00000518098 MROH2BQ7Z745 1585 aa11.55□□□□□ -0.56
LINCR-0001-202ENST00000518098 FANCD2Q9BXW9 1451 aa11.54□□□□□ -0.56
LINCR-0001-202ENST00000518098 CFTRP13569 1480 aa11.51□□□□□ -0.57
LINCR-0001-202ENST00000518098 IFT140Q96RY7 1462 aa11.44□□□□□ -0.58
LINCR-0001-202ENST00000518098 ABCC8Q09428 1581 aa11.41□□□□□ -0.58
LINCR-0001-202ENST00000518098 ARHGEF11O15085 1522 aa11.4□□□□□ -0.58
LINCR-0001-202ENST00000518098 RIMBP3CA6NJZ7 1639 aa11.4□□□□□ -0.58
LINCR-0001-202ENST00000518098 RIMBP3BA6NNM3 1639 aa11.4□□□□□ -0.58
LINCR-0001-202ENST00000518098 RIMBP3Q9UFD9 1639 aa11.4□□□□□ -0.58
LINCR-0001-202ENST00000518098 TRHP20396 242 aaPredicted RBP11.39□□□□□ -0.59
LINCR-0001-202ENST00000518098 CYB5RLQ6IPT4 315 aa11.38□□□□□ -0.59
LINCR-0001-202ENST00000518098 URB2Q14146 1524 aaKnown RBP11.38□□□□□ -0.59
LINCR-0001-202ENST00000518098 RSF1Q96T23 1441 aaPredicted RBP11.36□□□□□ -0.59
LINCR-0001-202ENST00000518098 WIZO95785 1651 aa11.33□□□□□ -0.6
LINCR-0001-202ENST00000518098 TOP2AP11388 1531 aaKnown RBP11.32□□□□□ -0.6
LINCR-0001-202ENST00000518098 ZNF608Q9ULD9 1512 aaPredicted RBP11.27□□□□□ -0.61
LINCR-0001-202ENST00000518098 TOPBP1Q92547 1522 aa11.25□□□□□ -0.61
LINCR-0001-202ENST00000518098 FBLN2P98095 1184 aa11.24□□□□□ -0.61
LINCR-0001-202ENST00000518098 ARAP1Q96P48 1450 aa11.23□□□□□ -0.61
LINCR-0001-202ENST00000518098 EIF4G3O43432 1585 aaKnown RBP11.2□□□□□ -0.62
LINCR-0001-202ENST00000518098 DNMBPQ6XZF7 1577 aa11.2□□□□□ -0.62
LINCR-0001-202ENST00000518098 PRDM2Q13029 1718 aa11.2□□□□□ -0.62
LINCR-0001-202ENST00000518098 WDR97A6NE52 1622 aa11.2□□□□□ -0.62
LINCR-0001-202ENST00000518098 CHMP7Q8WUX9 453 aaPredicted RBP11.19□□□□□ -0.62
LINCR-0001-202ENST00000518098 AQRO60306 1485 aaKnown RBP eCLIP11.18□□□□□ -0.62
LINCR-0001-202ENST00000518098 CCDC88BA6NC98 1476 aa11.17□□□□□ -0.62
LINCR-0001-202ENST00000518098 SYNJ1O43426 1573 aa11.14□□□□□ -0.63
LINCR-0001-202ENST00000518098 TARBP1Q13395 1621 aaKnown RBP11.13□□□□□ -0.63
LINCR-0001-202ENST00000518098 MAGI1Q96QZ7 1491 aaPredicted RBP11.13□□□□□ -0.63
LINCR-0001-202ENST00000518098 SOGA1O94964 1423 aa11.13□□□□□ -0.63
LINCR-0001-202ENST00000518098 POLA1P09884 1462 aaPredicted RBP11.12□□□□□ -0.63
LINCR-0001-202ENST00000518098 CHD1O14646 1710 aa11.09□□□□□ -0.63
LINCR-0001-202ENST00000518098 GRIN2BQ13224 1484 aa11.09□□□□□ -0.63
LINCR-0001-202ENST00000518098 CLASP1Q7Z460 1538 aa11.09□□□□□ -0.63
LINCR-0001-202ENST00000518098 SYNJ2O15056 1496 aa11.08□□□□□ -0.64
LINCR-0001-202ENST00000518098 TDRD9Q8NDG6 1382 aaKnown RBP11.08□□□□□ -0.64
LINCR-0001-202ENST00000518098 SNAPC4Q5SXM2 1469 aa11.06□□□□□ -0.64
LINCR-0001-202ENST00000518098 GAPVD1Q14C86 1478 aa11.06□□□□□ -0.64
LINCR-0001-202ENST00000518098 RAD54L2Q9Y4B4 1467 aa11.01□□□□□ -0.65
LINCR-0001-202ENST00000518098 FGD5Q6ZNL6 1462 aa10.99□□□□□ -0.65
LINCR-0001-202ENST00000518098 NPM1P06748 294 aaKnown RBP eCLIP10.95□□□□□ -0.66
LINCR-0001-202ENST00000518098 ABCA10Q8WWZ4 1543 aa10.91□□□□□ -0.66
LINCR-0001-202ENST00000518098 GRIN2AQ12879 1464 aa10.9□□□□□ -0.66
LINCR-0001-202ENST00000518098 NUP160Q12769 1436 aa10.89□□□□□ -0.67
LINCR-0001-202ENST00000518098 WRNQ14191 1432 aaPredicted RBP eCLIP10.88□□□□□ -0.67
LINCR-0001-202ENST00000518098 CUX1P39880 1505 aa10.88□□□□□ -0.67
LINCR-0001-202ENST00000518098 FHAD1B1AJZ9 1412 aa10.87□□□□□ -0.67
LINCR-0001-202ENST00000518098 FAM69CQ0P6D2 419 aa10.85□□□□□ -0.67
LINCR-0001-202ENST00000518098 ABCC10Q5T3U5 1492 aa10.84□□□□□ -0.67
LINCR-0001-202ENST00000518098 CEP170Q5SW79 1584 aa10.84□□□□□ -0.67
LINCR-0001-202ENST00000518098 PBRM1Q86U86 1689 aa10.83□□□□□ -0.68
LINCR-0001-202ENST00000518098 ABCA5Q8WWZ7 1642 aa10.83□□□□□ -0.68
LINCR-0001-202ENST00000518098 JPH4Q96JJ6 628 aa10.82□□□□□ -0.68
LINCR-0001-202ENST00000518098 SHROOM2Q13796 1616 aa10.8□□□□□ -0.68
LINCR-0001-202ENST00000518098 MAPKBP1O60336 1514 aa10.8□□□□□ -0.68
LINCR-0001-202ENST00000518098 PRG4Q92954 1404 aaPredicted RBP10.8□□□□□ -0.68
LINCR-0001-202ENST00000518098 ERICH3Q5RHP9 1530 aa10.79□□□□□ -0.68
LINCR-0001-202ENST00000518098 ADAMTS12P58397 1594 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 240.7 ms