RNA–Protein interactions for RNA: ENST00000515711.1

LMNA-224, Transcript of lamin A/C, humanhuman

TSL 5

Gene LMNA, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-224ENST00000515711 NISCHQ9Y2I1 1504 aa27.07■■□□□ 1.92
LMNA-224ENST00000515711 ABCC9O60706 1549 aa23.97■■□□□ 1.43
LMNA-224ENST00000515711 CCDC180Q9P1Z9 1646 aa23.8■■□□□ 1.4
LMNA-224ENST00000515711 DNAJC5BQ9UF47 199 aa23.33■■□□□ 1.33
LMNA-224ENST00000515711 ZCCHC6Q5VYS8 1495 aaKnown RBP22.79■■□□□ 1.24
LMNA-224ENST00000515711 DCAF1Q9Y4B6 1507 aa22.51■■□□□ 1.19
LMNA-224ENST00000515711 RB1CC1Q8TDY2 1594 aa22.29■■□□□ 1.16
LMNA-224ENST00000515711 MYO15BQ96JP2 1530 aa22.25■■□□□ 1.15
LMNA-224ENST00000515711 PABPN1Q86U42 306 aaKnown RBP eCLIP22.21■■□□□ 1.15
LMNA-224ENST00000515711 DCAF8L2P0C7V8 631 aa22.06■■□□□ 1.12
LMNA-224ENST00000515711 NACADO15069 1562 aa22.05■■□□□ 1.12
LMNA-224ENST00000515711 DNAJC5Q9H3Z4 198 aa21.99■■□□□ 1.11
LMNA-224ENST00000515711 SHROOM4Q9ULL8 1493 aa21.89■■□□□ 1.09
LMNA-224ENST00000515711 UNC13AQ9UPW8 1703 aa21.79■■□□□ 1.08
LMNA-224ENST00000515711 BICRAQ9NZM4 1560 aa21.74■■□□□ 1.07
LMNA-224ENST00000515711 SCRIBQ14160 1630 aa21.69■■□□□ 1.06
LMNA-224ENST00000515711 CECR2Q9BXF3 1484 aa21.65■■□□□ 1.06
LMNA-224ENST00000515711 CC2D2AQ9P2K1 1620 aa21.55■■□□□ 1.04
LMNA-224ENST00000515711 EIF4G1Q04637 1599 aaKnown RBP21.27■□□□□ 0.99
LMNA-224ENST00000515711 SUPT5HO00267 1087 aaKnown RBP21.06■□□□□ 0.96
LMNA-224ENST00000515711 BAZ1AQ9NRL2 1556 aaPredicted RBP20.97■□□□□ 0.95
LMNA-224ENST00000515711 RSF1Q96T23 1441 aaPredicted RBP20.95■□□□□ 0.94
LMNA-224ENST00000515711 CUX2O14529 1486 aa20.94■□□□□ 0.94
LMNA-224ENST00000515711 SMARCA4P51532 1647 aa20.86■□□□□ 0.93
LMNA-224ENST00000515711 MROH2BQ7Z745 1585 aa20.86■□□□□ 0.93
LMNA-224ENST00000515711 TRIM41Q8WV44 630 aa20.76■□□□□ 0.91
LMNA-224ENST00000515711 WIZO95785 1651 aa20.73■□□□□ 0.91
LMNA-224ENST00000515711 ERCC6Q03468 1493 aa20.72■□□□□ 0.91
LMNA-224ENST00000515711 PEG3Q9GZU2 1588 aa20.64■□□□□ 0.9
LMNA-224ENST00000515711 TOP2AP11388 1531 aaKnown RBP20.6■□□□□ 0.89
LMNA-224ENST00000515711 SMARCA2P51531 1590 aa20.53■□□□□ 0.88
LMNA-224ENST00000515711 ATAD2BQ9ULI0 1458 aa20.41■□□□□ 0.86
LMNA-224ENST00000515711 HMGXB3Q12766 1538 aa20.35■□□□□ 0.85
LMNA-224ENST00000515711 BAZ1BQ9UIG0 1483 aaKnown RBP20.35■□□□□ 0.85
LMNA-224ENST00000515711 NESP48681 1621 aa20.35■□□□□ 0.85
LMNA-224ENST00000515711 THOC2Q8NI27 1593 aaKnown RBP20.26■□□□□ 0.83
LMNA-224ENST00000515711 NCAPD3P42695 1498 aa20.26■□□□□ 0.83
LMNA-224ENST00000515711 CCDC88BA6NC98 1476 aa20.25■□□□□ 0.83
LMNA-224ENST00000515711 CHIC1Q5VXU3 224 aa20.23■□□□□ 0.83
LMNA-224ENST00000515711 KIF21AQ7Z4S6 1674 aa19.98■□□□□ 0.79
LMNA-224ENST00000515711 PRDM2Q13029 1718 aa19.98■□□□□ 0.79
LMNA-224ENST00000515711 LAMC3Q9Y6N6 1575 aa19.92■□□□□ 0.78
LMNA-224ENST00000515711 PDS5BQ9NTI5 1447 aa19.86■□□□□ 0.77
LMNA-224ENST00000515711 ABCC8Q09428 1581 aa19.85■□□□□ 0.77
LMNA-224ENST00000515711 OSCARQ8IYS5 282 aa19.84■□□□□ 0.77
LMNA-224ENST00000515711 CFTRP13569 1480 aa19.82■□□□□ 0.76
LMNA-224ENST00000515711 MRC2Q9UBG0 1479 aa19.79■□□□□ 0.76
LMNA-224ENST00000515711 WRNQ14191 1432 aaPredicted RBP eCLIP19.76■□□□□ 0.75
LMNA-224ENST00000515711 WDR62O43379 1518 aa19.75■□□□□ 0.75
LMNA-224ENST00000515711 RIMBP3CA6NJZ7 1639 aa19.72■□□□□ 0.75
LMNA-224ENST00000515711 RIMBP3BA6NNM3 1639 aa19.72■□□□□ 0.75
LMNA-224ENST00000515711 RIMBP3Q9UFD9 1639 aa19.72■□□□□ 0.75
LMNA-224ENST00000515711 BIVM-ERCC5R4GMW8 1640 aa19.71■□□□□ 0.75
LMNA-224ENST00000515711 CADPSQ9ULU8 1353 aa19.7■□□□□ 0.74
LMNA-224ENST00000515711 SYNJ1O43426 1573 aa19.69■□□□□ 0.74
LMNA-224ENST00000515711 TOP2BQ02880 1626 aa19.68■□□□□ 0.74
LMNA-224ENST00000515711 AEBP2Q6ZN18 517 aaPredicted RBP19.67■□□□□ 0.74
LMNA-224ENST00000515711 EEA1Q15075 1411 aa19.6■□□□□ 0.73
LMNA-224ENST00000515711 TRHP20396 242 aaPredicted RBP19.59■□□□□ 0.73
LMNA-224ENST00000515711 ARHGEF11O15085 1522 aa19.56■□□□□ 0.72
LMNA-224ENST00000515711 CUX1P39880 1505 aa19.53■□□□□ 0.72
LMNA-224ENST00000515711 CEP164Q9UPV0 1460 aa19.52■□□□□ 0.72
LMNA-224ENST00000515711 CYB5RLQ6IPT4 315 aa19.51■□□□□ 0.71
LMNA-224ENST00000515711 FANCD2Q9BXW9 1451 aa19.51■□□□□ 0.71
LMNA-224ENST00000515711 DNMBPQ6XZF7 1577 aa19.44■□□□□ 0.7
LMNA-224ENST00000515711 SOGA1O94964 1423 aa19.42■□□□□ 0.7
LMNA-224ENST00000515711 FAM9AQ8IZU1 332 aaPredicted RBP19.4■□□□□ 0.7
LMNA-224ENST00000515711 KIF21BO75037 1637 aa19.36■□□□□ 0.69
LMNA-224ENST00000515711 URB2Q14146 1524 aaKnown RBP19.35■□□□□ 0.69
LMNA-224ENST00000515711 LOC105371045A0A1W2PR82 267 aa19.35■□□□□ 0.69
LMNA-224ENST00000515711 ARAP1Q96P48 1450 aa19.34■□□□□ 0.69
LMNA-224ENST00000515711 RUSC2Q8N2Y8 1516 aa19.32■□□□□ 0.68
LMNA-224ENST00000515711 TOPBP1Q92547 1522 aa19.32■□□□□ 0.68
LMNA-224ENST00000515711 FGD5Q6ZNL6 1462 aa19.31■□□□□ 0.68
LMNA-224ENST00000515711 CSRNP3Q8WYN3 585 aa19.29■□□□□ 0.68
LMNA-224ENST00000515711 ZNF608Q9ULD9 1512 aaPredicted RBP19.29■□□□□ 0.68
LMNA-224ENST00000515711 GOLGA3Q08378 1498 aa19.28■□□□□ 0.68
LMNA-224ENST00000515711 KIF27Q86VH2 1401 aa19.27■□□□□ 0.68
LMNA-224ENST00000515711 WDR97A6NE52 1622 aa19.23■□□□□ 0.67
LMNA-224ENST00000515711 ERICH3Q5RHP9 1530 aa19.22■□□□□ 0.67
LMNA-224ENST00000515711 POLA1P09884 1462 aaPredicted RBP19.21■□□□□ 0.67
LMNA-224ENST00000515711 ABCA10Q8WWZ4 1543 aa19.19■□□□□ 0.66
LMNA-224ENST00000515711 TNIKQ9UKE5 1360 aa19.18■□□□□ 0.66
LMNA-224ENST00000515711 IFT140Q96RY7 1462 aa19.15■□□□□ 0.66
LMNA-224ENST00000515711 PRXQ9BXM0 1461 aa19.14■□□□□ 0.65
LMNA-224ENST00000515711 CUL7Q14999 1698 aa19.1■□□□□ 0.65
LMNA-224ENST00000515711 CHD1O14646 1710 aa19.09■□□□□ 0.65
LMNA-224ENST00000515711 EIF4G3O43432 1585 aaKnown RBP19.09■□□□□ 0.65
LMNA-224ENST00000515711 ABCA5Q8WWZ7 1642 aa19.08■□□□□ 0.65
LMNA-224ENST00000515711 RAD54L2Q9Y4B4 1467 aa19.07■□□□□ 0.64
LMNA-224ENST00000515711 RAPGEF2Q9Y4G8 1499 aa19.07■□□□□ 0.64
LMNA-224ENST00000515711 TARBP1Q13395 1621 aaKnown RBP19.07■□□□□ 0.64
LMNA-224ENST00000515711 FBLN2P98095 1184 aa19.06■□□□□ 0.64
LMNA-224ENST00000515711 CEP162Q5TB80 1403 aa19.06■□□□□ 0.64
LMNA-224ENST00000515711 EHMT2Q96KQ7 1210 aa19.04■□□□□ 0.64
LMNA-224ENST00000515711 UBTFP17480 764 aaKnown RBP19.02■□□□□ 0.64
LMNA-224ENST00000515711 ILDR1Q86SU0 546 aaPredicted RBP19.01■□□□□ 0.63
LMNA-224ENST00000515711 AQRO60306 1485 aaKnown RBP eCLIP18.99■□□□□ 0.63
LMNA-224ENST00000515711 IGF1RP08069 1367 aa18.99■□□□□ 0.63
LMNA-224ENST00000515711 PBRM1Q86U86 1689 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms