RNA–Protein interactions for RNA: ENST00000508818.5

UBE2D3-227, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 2

Gene UBE2D3, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-227ENST00000508818 NISCHQ9Y2I1 1504 aa24.78■■□□□ 1.56
UBE2D3-227ENST00000508818 AEBP2Q6ZN18 517 aaPredicted RBP22.96■■□□□ 1.27
UBE2D3-227ENST00000508818 CCDC180Q9P1Z9 1646 aa22.14■■□□□ 1.14
UBE2D3-227ENST00000508818 ABCC9O60706 1549 aa22.1■■□□□ 1.13
UBE2D3-227ENST00000508818 CHIC1Q5VXU3 224 aa22.03■■□□□ 1.12
UBE2D3-227ENST00000508818 DCAF8L2P0C7V8 631 aa21.08■□□□□ 0.97
UBE2D3-227ENST00000508818 RB1CC1Q8TDY2 1594 aa21.07■□□□□ 0.96
UBE2D3-227ENST00000508818 NACADO15069 1562 aa20.95■□□□□ 0.94
UBE2D3-227ENST00000508818 MYO15BQ96JP2 1530 aa20.66■□□□□ 0.9
UBE2D3-227ENST00000508818 PABPN1Q86U42 306 aaKnown RBP eCLIP20.65■□□□□ 0.9
UBE2D3-227ENST00000508818 DNAJC5BQ9UF47 199 aa20.59■□□□□ 0.89
UBE2D3-227ENST00000508818 ZCCHC6Q5VYS8 1495 aaKnown RBP20.54■□□□□ 0.88
UBE2D3-227ENST00000508818 UNC13AQ9UPW8 1703 aa20.49■□□□□ 0.87
UBE2D3-227ENST00000508818 DCAF1Q9Y4B6 1507 aa20.45■□□□□ 0.86
UBE2D3-227ENST00000508818 BICRAQ9NZM4 1560 aa20.37■□□□□ 0.85
UBE2D3-227ENST00000508818 SCRIBQ14160 1630 aa20.23■□□□□ 0.83
UBE2D3-227ENST00000508818 SHROOM4Q9ULL8 1493 aa20.15■□□□□ 0.82
UBE2D3-227ENST00000508818 CC2D2AQ9P2K1 1620 aa19.92■□□□□ 0.78
UBE2D3-227ENST00000508818 EIF4G1Q04637 1599 aaKnown RBP19.91■□□□□ 0.78
UBE2D3-227ENST00000508818 CECR2Q9BXF3 1484 aa19.89■□□□□ 0.77
UBE2D3-227ENST00000508818 SENP3Q9H4L4 574 aaPredicted RBP19.75■□□□□ 0.75
UBE2D3-227ENST00000508818 PHF23Q9BUL5 403 aaPredicted RBP19.41■□□□□ 0.7
UBE2D3-227ENST00000508818 NCAPD3P42695 1498 aa19.34■□□□□ 0.69
UBE2D3-227ENST00000508818 ATAD2BQ9ULI0 1458 aa19.29■□□□□ 0.68
UBE2D3-227ENST00000508818 SMARCA4P51532 1647 aa19.29■□□□□ 0.68
UBE2D3-227ENST00000508818 SMARCA2P51531 1590 aa19.27■□□□□ 0.67
UBE2D3-227ENST00000508818 BAZ1AQ9NRL2 1556 aaPredicted RBP19.24■□□□□ 0.67
UBE2D3-227ENST00000508818 HMGXB3Q12766 1538 aa19.17■□□□□ 0.66
UBE2D3-227ENST00000508818 BAZ1BQ9UIG0 1483 aaKnown RBP19.16■□□□□ 0.66
UBE2D3-227ENST00000508818 ERCC6Q03468 1493 aa19.11■□□□□ 0.65
UBE2D3-227ENST00000508818 MROH2BQ7Z745 1585 aa19.09■□□□□ 0.65
UBE2D3-227ENST00000508818 PEG3Q9GZU2 1588 aa19.06■□□□□ 0.64
UBE2D3-227ENST00000508818 NESP48681 1621 aa18.98■□□□□ 0.63
UBE2D3-227ENST00000508818 CUX2O14529 1486 aa18.96■□□□□ 0.63
UBE2D3-227ENST00000508818 LAMC3Q9Y6N6 1575 aa18.87■□□□□ 0.61
UBE2D3-227ENST00000508818 WIZO95785 1651 aa18.86■□□□□ 0.61
UBE2D3-227ENST00000508818 DNAJC5Q9H3Z4 198 aa18.86■□□□□ 0.61
UBE2D3-227ENST00000508818 PDS5BQ9NTI5 1447 aa18.83■□□□□ 0.61
UBE2D3-227ENST00000508818 CADPSQ9ULU8 1353 aa18.8■□□□□ 0.6
UBE2D3-227ENST00000508818 RSF1Q96T23 1441 aaPredicted RBP18.76■□□□□ 0.59
UBE2D3-227ENST00000508818 KIF21AQ7Z4S6 1674 aa18.7■□□□□ 0.58
UBE2D3-227ENST00000508818 THOC2Q8NI27 1593 aaKnown RBP18.7■□□□□ 0.58
UBE2D3-227ENST00000508818 TOP2AP11388 1531 aaKnown RBP18.64■□□□□ 0.58
UBE2D3-227ENST00000508818 MRC2Q9UBG0 1479 aa18.61■□□□□ 0.57
UBE2D3-227ENST00000508818 CEP164Q9UPV0 1460 aa18.58■□□□□ 0.56
UBE2D3-227ENST00000508818 CFTRP13569 1480 aa18.57■□□□□ 0.56
UBE2D3-227ENST00000508818 FANCD2Q9BXW9 1451 aa18.57■□□□□ 0.56
UBE2D3-227ENST00000508818 WDR62O43379 1518 aa18.51■□□□□ 0.55
UBE2D3-227ENST00000508818 CCDC88BA6NC98 1476 aa18.46■□□□□ 0.55
UBE2D3-227ENST00000508818 URB2Q14146 1524 aaKnown RBP18.36■□□□□ 0.53
UBE2D3-227ENST00000508818 PRDM2Q13029 1718 aa18.33■□□□□ 0.52
UBE2D3-227ENST00000508818 FOXD1Q16676 465 aa18.27■□□□□ 0.52
UBE2D3-227ENST00000508818 ABCC8Q09428 1581 aa18.23■□□□□ 0.51
UBE2D3-227ENST00000508818 OSCARQ8IYS5 282 aa18.23■□□□□ 0.51
UBE2D3-227ENST00000508818 TOPBP1Q92547 1522 aa18.21■□□□□ 0.51
UBE2D3-227ENST00000508818 IFT140Q96RY7 1462 aa18.2■□□□□ 0.5
UBE2D3-227ENST00000508818 SUPT5HO00267 1087 aaKnown RBP18.19■□□□□ 0.5
UBE2D3-227ENST00000508818 TRIM41Q8WV44 630 aa18.16■□□□□ 0.5
UBE2D3-227ENST00000508818 DNMBPQ6XZF7 1577 aa18.15■□□□□ 0.5
UBE2D3-227ENST00000508818 ZNF608Q9ULD9 1512 aaPredicted RBP18.13■□□□□ 0.49
UBE2D3-227ENST00000508818 AQRO60306 1485 aaKnown RBP eCLIP18.02■□□□□ 0.484e-14■■■■□ 25.4
UBE2D3-227ENST00000508818 POLA1P09884 1462 aaPredicted RBP18.02■□□□□ 0.48
UBE2D3-227ENST00000508818 SOGA1O94964 1423 aa18.02■□□□□ 0.48
UBE2D3-227ENST00000508818 EIF4G3O43432 1585 aaKnown RBP18.01■□□□□ 0.47
UBE2D3-227ENST00000508818 FBLN2P98095 1184 aa18■□□□□ 0.47
UBE2D3-227ENST00000508818 TARBP1Q13395 1621 aaKnown RBP17.99■□□□□ 0.47
UBE2D3-227ENST00000508818 RAD54L2Q9Y4B4 1467 aa17.98■□□□□ 0.47
UBE2D3-227ENST00000508818 TDRD9Q8NDG6 1382 aaKnown RBP17.96■□□□□ 0.47
UBE2D3-227ENST00000508818 FGD5Q6ZNL6 1462 aa17.95■□□□□ 0.46
UBE2D3-227ENST00000508818 CUX1P39880 1505 aa17.93■□□□□ 0.46
UBE2D3-227ENST00000508818 CHMP7Q8WUX9 453 aaPredicted RBP17.87■□□□□ 0.45
UBE2D3-227ENST00000508818 RIMBP3CA6NJZ7 1639 aa17.85■□□□□ 0.45
UBE2D3-227ENST00000508818 RIMBP3BA6NNM3 1639 aa17.85■□□□□ 0.45
UBE2D3-227ENST00000508818 CHD1O14646 1710 aa17.85■□□□□ 0.45
UBE2D3-227ENST00000508818 RIMBP3Q9UFD9 1639 aa17.85■□□□□ 0.45
UBE2D3-227ENST00000508818 WDR97A6NE52 1622 aa17.83■□□□□ 0.45
UBE2D3-227ENST00000508818 ARHGEF11O15085 1522 aa17.82■□□□□ 0.44
UBE2D3-227ENST00000508818 GRIN2BQ13224 1484 aa17.82■□□□□ 0.44
UBE2D3-227ENST00000508818 SNAPC4Q5SXM2 1469 aa17.82■□□□□ 0.44
UBE2D3-227ENST00000508818 CYB5RLQ6IPT4 315 aa17.8■□□□□ 0.44
UBE2D3-227ENST00000508818 MAGI1Q96QZ7 1491 aaPredicted RBP17.78■□□□□ 0.44
UBE2D3-227ENST00000508818 GAPVD1Q14C86 1478 aa17.77■□□□□ 0.44
UBE2D3-227ENST00000508818 WRNQ14191 1432 aaPredicted RBP eCLIP17.76■□□□□ 0.435e-6■■■■■ 29.2
UBE2D3-227ENST00000508818 ABCA10Q8WWZ4 1543 aa17.74■□□□□ 0.43
UBE2D3-227ENST00000508818 SYNJ2O15056 1496 aa17.73■□□□□ 0.43
UBE2D3-227ENST00000508818 SYNJ1O43426 1573 aa17.71■□□□□ 0.43
UBE2D3-227ENST00000508818 PLPPR3Q6T4P5 718 aa17.71■□□□□ 0.43
UBE2D3-227ENST00000508818 PBRM1Q86U86 1689 aa17.68■□□□□ 0.42
UBE2D3-227ENST00000508818 TOP2BQ02880 1626 aa17.68■□□□□ 0.42
UBE2D3-227ENST00000508818 ABCA5Q8WWZ7 1642 aa17.65■□□□□ 0.42
UBE2D3-227ENST00000508818 BIVM-ERCC5R4GMW8 1640 aa17.65■□□□□ 0.42
UBE2D3-227ENST00000508818 ARAP1Q96P48 1450 aa17.63■□□□□ 0.41
UBE2D3-227ENST00000508818 CLASP1Q7Z460 1538 aa17.63■□□□□ 0.41
UBE2D3-227ENST00000508818 TRHP20396 242 aaPredicted RBP17.61■□□□□ 0.41
UBE2D3-227ENST00000508818 GRIN2AQ12879 1464 aa17.56■□□□□ 0.4
UBE2D3-227ENST00000508818 FHAD1B1AJZ9 1412 aa17.55■□□□□ 0.4
UBE2D3-227ENST00000508818 ADAMTS12P58397 1594 aa17.53■□□□□ 0.4
UBE2D3-227ENST00000508818 ERICH3Q5RHP9 1530 aa17.52■□□□□ 0.4
UBE2D3-227ENST00000508818 NUP160Q12769 1436 aa17.47■□□□□ 0.39
UBE2D3-227ENST00000508818 CEP170Q5SW79 1584 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms