RNA–Protein interactions for RNA: ENST00000508783.5

RPS3A-207, Transcript of ribosomal protein S3A, humanhuman

TSL 3

Gene RPS3A, Length 587 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS3A-207ENST00000508783 NISCHQ9Y2I1 1504 aa32.93■■■□□ 2.86
RPS3A-207ENST00000508783 ABCC9O60706 1549 aa30.55■■■□□ 2.48
RPS3A-207ENST00000508783 CCDC180Q9P1Z9 1646 aa29.88■■■□□ 2.37
RPS3A-207ENST00000508783 DNAJC5BQ9UF47 199 aa29.16■■■□□ 2.26
RPS3A-207ENST00000508783 RB1CC1Q8TDY2 1594 aa28.84■■■□□ 2.21
RPS3A-207ENST00000508783 NACADO15069 1562 aa28.46■■■□□ 2.15
RPS3A-207ENST00000508783 PABPN1Q86U42 306 aaKnown RBP eCLIP28.33■■■□□ 2.13
RPS3A-207ENST00000508783 AEBP2Q6ZN18 517 aaPredicted RBP28.3■■■□□ 2.12
RPS3A-207ENST00000508783 DCAF8L2P0C7V8 631 aa28.24■■■□□ 2.11
RPS3A-207ENST00000508783 UNC13AQ9UPW8 1703 aa27.96■■■□□ 2.07
RPS3A-207ENST00000508783 BICRAQ9NZM4 1560 aa27.86■■■□□ 2.05
RPS3A-207ENST00000508783 MYO15BQ96JP2 1530 aa27.84■■■□□ 2.05
RPS3A-207ENST00000508783 CECR2Q9BXF3 1484 aa27.64■■■□□ 2.01
RPS3A-207ENST00000508783 SHROOM4Q9ULL8 1493 aa27.64■■■□□ 2.01
RPS3A-207ENST00000508783 CC2D2AQ9P2K1 1620 aa27.53■■■□□ 2
RPS3A-207ENST00000508783 DNAJC5Q9H3Z4 198 aa27.46■■□□□ 1.99
RPS3A-207ENST00000508783 EIF4G1Q04637 1599 aaKnown RBP27.32■■□□□ 1.96
RPS3A-207ENST00000508783 DCAF1Q9Y4B6 1507 aa27.21■■□□□ 1.95
RPS3A-207ENST00000508783 CHIC1Q5VXU3 224 aa27.19■■□□□ 1.94
RPS3A-207ENST00000508783 SCRIBQ14160 1630 aa27.14■■□□□ 1.94
RPS3A-207ENST00000508783 ZCCHC6Q5VYS8 1495 aaKnown RBP27.13■■□□□ 1.93
RPS3A-207ENST00000508783 CUX2O14529 1486 aa26.71■■□□□ 1.87
RPS3A-207ENST00000508783 ERCC6Q03468 1493 aa26.55■■□□□ 1.84
RPS3A-207ENST00000508783 NCAPD3P42695 1498 aa26.26■■□□□ 1.79
RPS3A-207ENST00000508783 ATAD2BQ9ULI0 1458 aa26.05■■□□□ 1.76
RPS3A-207ENST00000508783 SMARCA2P51531 1590 aa26.02■■□□□ 1.76
RPS3A-207ENST00000508783 HMGXB3Q12766 1538 aa26■■□□□ 1.75
RPS3A-207ENST00000508783 TRIM41Q8WV44 630 aa26■■□□□ 1.75
RPS3A-207ENST00000508783 NESP48681 1621 aa25.97■■□□□ 1.75
RPS3A-207ENST00000508783 THOC2Q8NI27 1593 aaKnown RBP25.86■■□□□ 1.73
RPS3A-207ENST00000508783 BAZ1BQ9UIG0 1483 aaKnown RBP25.83■■□□□ 1.73
RPS3A-207ENST00000508783 SMARCA4P51532 1647 aa25.82■■□□□ 1.72
RPS3A-207ENST00000508783 LAMC3Q9Y6N6 1575 aa25.81■■□□□ 1.72
RPS3A-207ENST00000508783 PDS5BQ9NTI5 1447 aa25.75■■□□□ 1.71
RPS3A-207ENST00000508783 BAZ1AQ9NRL2 1556 aaPredicted RBP25.68■■□□□ 1.7
RPS3A-207ENST00000508783 KIF21AQ7Z4S6 1674 aa25.61■■□□□ 1.69
RPS3A-207ENST00000508783 PEG3Q9GZU2 1588 aa25.59■■□□□ 1.69
RPS3A-207ENST00000508783 MRC2Q9UBG0 1479 aa25.5■■□□□ 1.67
RPS3A-207ENST00000508783 CADPSQ9ULU8 1353 aa25.45■■□□□ 1.67
RPS3A-207ENST00000508783 OSCARQ8IYS5 282 aa25.42■■□□□ 1.66
RPS3A-207ENST00000508783 WDR62O43379 1518 aa25.41■■□□□ 1.66
RPS3A-207ENST00000508783 MROH2BQ7Z745 1585 aa25.31■■□□□ 1.64
RPS3A-207ENST00000508783 CEP164Q9UPV0 1460 aa25.28■■□□□ 1.64
RPS3A-207ENST00000508783 FANCD2Q9BXW9 1451 aa25.15■■□□□ 1.62
RPS3A-207ENST00000508783 RIMBP3CA6NJZ7 1639 aa25.01■■□□□ 1.59
RPS3A-207ENST00000508783 RIMBP3BA6NNM3 1639 aa25.01■■□□□ 1.59
RPS3A-207ENST00000508783 RIMBP3Q9UFD9 1639 aa25.01■■□□□ 1.59
RPS3A-207ENST00000508783 CFTRP13569 1480 aa24.98■■□□□ 1.59
RPS3A-207ENST00000508783 WIZO95785 1651 aa24.96■■□□□ 1.59
RPS3A-207ENST00000508783 URB2Q14146 1524 aaKnown RBP24.91■■□□□ 1.58
RPS3A-207ENST00000508783 ARHGEF11O15085 1522 aa24.9■■□□□ 1.58
RPS3A-207ENST00000508783 TRHP20396 242 aaPredicted RBP24.86■■□□□ 1.57
RPS3A-207ENST00000508783 CYB5RLQ6IPT4 315 aa24.83■■□□□ 1.57
RPS3A-207ENST00000508783 IFT140Q96RY7 1462 aa24.81■■□□□ 1.56
RPS3A-207ENST00000508783 ZNF608Q9ULD9 1512 aaPredicted RBP24.71■■□□□ 1.55
RPS3A-207ENST00000508783 TOP2AP11388 1531 aaKnown RBP24.68■■□□□ 1.54
RPS3A-207ENST00000508783 PRDM2Q13029 1718 aa24.61■■□□□ 1.53
RPS3A-207ENST00000508783 ABCC8Q09428 1581 aa24.6■■□□□ 1.53
RPS3A-207ENST00000508783 RSF1Q96T23 1441 aaPredicted RBP24.59■■□□□ 1.53
RPS3A-207ENST00000508783 EIF4G3O43432 1585 aaKnown RBP24.57■■□□□ 1.52
RPS3A-207ENST00000508783 ARAP1Q96P48 1450 aa24.57■■□□□ 1.52
RPS3A-207ENST00000508783 TOPBP1Q92547 1522 aa24.56■■□□□ 1.52
RPS3A-207ENST00000508783 FBLN2P98095 1184 aa24.56■■□□□ 1.52
RPS3A-207ENST00000508783 CHD1O14646 1710 aa24.48■■□□□ 1.51
RPS3A-207ENST00000508783 AQRO60306 1485 aaKnown RBP eCLIP24.44■■□□□ 1.55e-10■■■■■ 32.4
RPS3A-207ENST00000508783 DNMBPQ6XZF7 1577 aa24.43■■□□□ 1.5
RPS3A-207ENST00000508783 CCDC88BA6NC98 1476 aa24.38■■□□□ 1.49
RPS3A-207ENST00000508783 TARBP1Q13395 1621 aaKnown RBP24.35■■□□□ 1.49
RPS3A-207ENST00000508783 CHMP7Q8WUX9 453 aaPredicted RBP24.28■■□□□ 1.48
RPS3A-207ENST00000508783 POLA1P09884 1462 aaPredicted RBP24.26■■□□□ 1.47
RPS3A-207ENST00000508783 SYNJ1O43426 1573 aa24.25■■□□□ 1.47
RPS3A-207ENST00000508783 SENP3Q9H4L4 574 aaPredicted RBP24.22■■□□□ 1.47
RPS3A-207ENST00000508783 CLASP1Q7Z460 1538 aa24.21■■□□□ 1.47
RPS3A-207ENST00000508783 SOGA1O94964 1423 aa24.21■■□□□ 1.47
RPS3A-207ENST00000508783 TDRD9Q8NDG6 1382 aaKnown RBP24.21■■□□□ 1.47
RPS3A-207ENST00000508783 SNAPC4Q5SXM2 1469 aa24.19■■□□□ 1.46
RPS3A-207ENST00000508783 WDR97A6NE52 1622 aa24.18■■□□□ 1.46
RPS3A-207ENST00000508783 MAGI1Q96QZ7 1491 aaPredicted RBP24.16■■□□□ 1.46
RPS3A-207ENST00000508783 RAD54L2Q9Y4B4 1467 aa24.15■■□□□ 1.46
RPS3A-207ENST00000508783 GRIN2BQ13224 1484 aa24.09■■□□□ 1.45
RPS3A-207ENST00000508783 GAPVD1Q14C86 1478 aa24.08■■□□□ 1.45
RPS3A-207ENST00000508783 SYNJ2O15056 1496 aa24.07■■□□□ 1.44
RPS3A-207ENST00000508783 FGD5Q6ZNL6 1462 aa24.02■■□□□ 1.44
RPS3A-207ENST00000508783 PHF23Q9BUL5 403 aaPredicted RBP23.9■■□□□ 1.42
RPS3A-207ENST00000508783 CUX1P39880 1505 aa23.84■■□□□ 1.41
RPS3A-207ENST00000508783 PBRM1Q86U86 1689 aa23.83■■□□□ 1.41
RPS3A-207ENST00000508783 GRIN2AQ12879 1464 aa23.74■■□□□ 1.39
RPS3A-207ENST00000508783 ABCA10Q8WWZ4 1543 aa23.73■■□□□ 1.39
RPS3A-207ENST00000508783 CEP170Q5SW79 1584 aa23.7■■□□□ 1.38
RPS3A-207ENST00000508783 ERCC6L2Q5T890 1561 aa23.7■■□□□ 1.38
RPS3A-207ENST00000508783 ABCA5Q8WWZ7 1642 aa23.69■■□□□ 1.38
RPS3A-207ENST00000508783 NUP160Q12769 1436 aa23.67■■□□□ 1.38
RPS3A-207ENST00000508783 NPM1P06748 294 aaKnown RBP eCLIP23.65■■□□□ 1.38
RPS3A-207ENST00000508783 KIF13AQ9H1H9 1805 aa23.61■■□□□ 1.37
RPS3A-207ENST00000508783 FAM69CQ0P6D2 419 aa23.61■■□□□ 1.37
RPS3A-207ENST00000508783 SHROOM2Q13796 1616 aa23.59■■□□□ 1.37
RPS3A-207ENST00000508783 FHAD1B1AJZ9 1412 aa23.59■■□□□ 1.37
RPS3A-207ENST00000508783 ADAMTS12P58397 1594 aa23.58■■□□□ 1.37
RPS3A-207ENST00000508783 WRNQ14191 1432 aaPredicted RBP eCLIP23.58■■□□□ 1.36
RPS3A-207ENST00000508783 ABCC10Q5T3U5 1492 aa23.55■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms