RNA–Protein interactions for RNA: ENST00000508740.5

NR1I3-226, Transcript of nuclear receptor subfamily 1 group I member 3, humanhuman

TSL 1 (best) BASIC

Gene NR1I3, Length 977 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR1I3-226ENST00000508740 AEBP2Q6ZN18 517 aaPredicted RBP19.32■□□□□ 0.68
NR1I3-226ENST00000508740 CHIC1Q5VXU3 224 aa19.03■□□□□ 0.64
NR1I3-226ENST00000508740 NISCHQ9Y2I1 1504 aa17.7■□□□□ 0.42
NR1I3-226ENST00000508740 PHF23Q9BUL5 403 aaPredicted RBP16.85■□□□□ 0.29
NR1I3-226ENST00000508740 SENP3Q9H4L4 574 aaPredicted RBP16.21■□□□□ 0.19
NR1I3-226ENST00000508740 ABCC9O60706 1549 aa15.53■□□□□ 0.08
NR1I3-226ENST00000508740 PLPPR3Q6T4P5 718 aa15.53■□□□□ 0.08
NR1I3-226ENST00000508740 CCDC180Q9P1Z9 1646 aa15.43■□□□□ 0.06
NR1I3-226ENST00000508740 FOXD1Q16676 465 aa15.11■□□□□ 0.01
NR1I3-226ENST00000508740 ZCCHC6Q5VYS8 1495 aaKnown RBP14.87□□□□□ -0.03
NR1I3-226ENST00000508740 RB1CC1Q8TDY2 1594 aa14.81□□□□□ -0.04
NR1I3-226ENST00000508740 ADRA2BP18089 450 aa14.8□□□□□ -0.04
NR1I3-226ENST00000508740 PPP6R1Q9UPN7 881 aa14.8□□□□□ -0.04
NR1I3-226ENST00000508740 DNAJC5BQ9UF47 199 aa14.73□□□□□ -0.05
NR1I3-226ENST00000508740 DCAF8L2P0C7V8 631 aa14.68□□□□□ -0.06
NR1I3-226ENST00000508740 NACADO15069 1562 aa14.66□□□□□ -0.06
NR1I3-226ENST00000508740 DCAF1Q9Y4B6 1507 aa14.62□□□□□ -0.07
NR1I3-226ENST00000508740 SHROOM4Q9ULL8 1493 aa14.54□□□□□ -0.08
NR1I3-226ENST00000508740 MYO15BQ96JP2 1530 aa14.44□□□□□ -0.1
NR1I3-226ENST00000508740 PABPN1Q86U42 306 aaKnown RBP eCLIP14.37□□□□□ -0.11
NR1I3-226ENST00000508740 UNC13AQ9UPW8 1703 aa14.35□□□□□ -0.11
NR1I3-226ENST00000508740 PIAS4Q8N2W9 510 aaPredicted RBP14.29□□□□□ -0.12
NR1I3-226ENST00000508740 BICRAQ9NZM4 1560 aa14.27□□□□□ -0.12
NR1I3-226ENST00000508740 SCRIBQ14160 1630 aa14.12□□□□□ -0.15
NR1I3-226ENST00000508740 CECR2Q9BXF3 1484 aa14.09□□□□□ -0.15
NR1I3-226ENST00000508740 SUPT5HO00267 1087 aaKnown RBP14.07□□□□□ -0.16
NR1I3-226ENST00000508740 CC2D2AQ9P2K1 1620 aa14.07□□□□□ -0.16
NR1I3-226ENST00000508740 EIF4G1Q04637 1599 aaKnown RBP14□□□□□ -0.17
NR1I3-226ENST00000508740 DNAJC5Q9H3Z4 198 aa13.87□□□□□ -0.19
NR1I3-226ENST00000508740 KCNA4P22459 653 aa13.81□□□□□ -0.2
NR1I3-226ENST00000508740 RSF1Q96T23 1441 aaPredicted RBP13.8□□□□□ -0.2
NR1I3-226ENST00000508740 PPP4R3CPQ6ZMV5 832 aa13.77□□□□□ -0.21
NR1I3-226ENST00000508740 MSH5O43196 834 aa13.71□□□□□ -0.21
NR1I3-226ENST00000508740 MROH2BQ7Z745 1585 aa13.67□□□□□ -0.22
NR1I3-226ENST00000508740 CUX2O14529 1486 aa13.66□□□□□ -0.22
NR1I3-226ENST00000508740 BAZ1AQ9NRL2 1556 aaPredicted RBP13.63□□□□□ -0.23
NR1I3-226ENST00000508740 SMARCA4P51532 1647 aa13.53□□□□□ -0.24
NR1I3-226ENST00000508740 ERCC6Q03468 1493 aa13.52□□□□□ -0.25
NR1I3-226ENST00000508740 WIZO95785 1651 aa13.52□□□□□ -0.25
NR1I3-226ENST00000508740 NCAPD3P42695 1498 aa13.51□□□□□ -0.25
NR1I3-226ENST00000508740 SMARCA2P51531 1590 aa13.41□□□□□ -0.26
NR1I3-226ENST00000508740 TOP2AP11388 1531 aaKnown RBP13.4□□□□□ -0.26
NR1I3-226ENST00000508740 HMGXB3Q12766 1538 aa13.4□□□□□ -0.26
NR1I3-226ENST00000508740 NCBP3Q53F19 620 aaKnown RBP13.39□□□□□ -0.27
NR1I3-226ENST00000508740 ATAD2BQ9ULI0 1458 aa13.38□□□□□ -0.27
NR1I3-226ENST00000508740 PEG3Q9GZU2 1588 aa13.37□□□□□ -0.27
NR1I3-226ENST00000508740 MAPK8IP2Q13387 824 aaPredicted RBP13.37□□□□□ -0.27
NR1I3-226ENST00000508740 SCAF1Q9H7N4 1312 aaKnown RBP13.35□□□□□ -0.27
NR1I3-226ENST00000508740 CCDC88BA6NC98 1476 aa13.32□□□□□ -0.28
NR1I3-226ENST00000508740 NPM3O75607 178 aaKnown RBP13.32□□□□□ -0.28
NR1I3-226ENST00000508740 CNKSR2Q8WXI2 1034 aa13.27□□□□□ -0.29
NR1I3-226ENST00000508740 LAMC3Q9Y6N6 1575 aa13.27□□□□□ -0.29
NR1I3-226ENST00000508740 BAZ1BQ9UIG0 1483 aaKnown RBP13.26□□□□□ -0.29
NR1I3-226ENST00000508740 TRIM41Q8WV44 630 aa13.24□□□□□ -0.29
NR1I3-226ENST00000508740 THOC2Q8NI27 1593 aaKnown RBP13.24□□□□□ -0.29
NR1I3-226ENST00000508740 NESP48681 1621 aa13.23□□□□□ -0.29
NR1I3-226ENST00000508740 PDS5BQ9NTI5 1447 aa13.21□□□□□ -0.3
NR1I3-226ENST00000508740 EHMT2Q96KQ7 1210 aa13.16□□□□□ -0.3
NR1I3-226ENST00000508740 SLC4A1APQ9BWU0 796 aaKnown RBP13.15□□□□□ -0.3
NR1I3-226ENST00000508740 KIF21AQ7Z4S6 1674 aa13.09□□□□□ -0.31
NR1I3-226ENST00000508740 CADPSQ9ULU8 1353 aa13.07□□□□□ -0.32
NR1I3-226ENST00000508740 MRC2Q9UBG0 1479 aa13.06□□□□□ -0.32
NR1I3-226ENST00000508740 WDR62O43379 1518 aa13.04□□□□□ -0.32
NR1I3-226ENST00000508740 LOC105371045A0A1W2PR82 267 aa13.03□□□□□ -0.32
NR1I3-226ENST00000508740 DMRT2Q9Y5R5 561 aa13.02□□□□□ -0.33
NR1I3-226ENST00000508740 ABCC8Q09428 1581 aa13.02□□□□□ -0.33
NR1I3-226ENST00000508740 FAM9AQ8IZU1 332 aaPredicted RBP12.99□□□□□ -0.33
NR1I3-226ENST00000508740 WRNQ14191 1432 aaPredicted RBP eCLIP12.96□□□□□ -0.33
NR1I3-226ENST00000508740 CFTRP13569 1480 aa12.96□□□□□ -0.34
NR1I3-226ENST00000508740 CEP164Q9UPV0 1460 aa12.96□□□□□ -0.34
NR1I3-226ENST00000508740 RNF216Q9NWF9 866 aaPredicted RBP12.95□□□□□ -0.34
NR1I3-226ENST00000508740 OSCARQ8IYS5 282 aa12.94□□□□□ -0.34
NR1I3-226ENST00000508740 FANCD2Q9BXW9 1451 aa12.89□□□□□ -0.35
NR1I3-226ENST00000508740 SYNJ1O43426 1573 aa12.86□□□□□ -0.35
NR1I3-226ENST00000508740 CSRNP3Q8WYN3 585 aa12.86□□□□□ -0.35
NR1I3-226ENST00000508740 SOGA1O94964 1423 aa12.86□□□□□ -0.35
NR1I3-226ENST00000508740 HOXD11P31277 338 aaPredicted RBP12.84□□□□□ -0.35
NR1I3-226ENST00000508740 EEA1Q15075 1411 aa12.84□□□□□ -0.35
NR1I3-226ENST00000508740 TOP2BQ02880 1626 aa12.8□□□□□ -0.36
NR1I3-226ENST00000508740 RUSC2Q8N2Y8 1516 aa12.79□□□□□ -0.36
NR1I3-226ENST00000508740 CUX1P39880 1505 aa12.78□□□□□ -0.36
NR1I3-226ENST00000508740 ZBTB22O15209 634 aa12.76□□□□□ -0.37
NR1I3-226ENST00000508740 URB2Q14146 1524 aaKnown RBP12.76□□□□□ -0.37
NR1I3-226ENST00000508740 BIVM-ERCC5R4GMW8 1640 aa12.76□□□□□ -0.37
NR1I3-226ENST00000508740 IFT140Q96RY7 1462 aa12.73□□□□□ -0.37
NR1I3-226ENST00000508740 PRDM2Q13029 1718 aa12.73□□□□□ -0.37
NR1I3-226ENST00000508740 RIMBP3CA6NJZ7 1639 aa12.73□□□□□ -0.37
NR1I3-226ENST00000508740 RIMBP3BA6NNM3 1639 aa12.73□□□□□ -0.37
NR1I3-226ENST00000508740 RIMBP3Q9UFD9 1639 aa12.73□□□□□ -0.37
NR1I3-226ENST00000508740 ARHGEF11O15085 1522 aa12.69□□□□□ -0.38
NR1I3-226ENST00000508740 TNIKQ9UKE5 1360 aa12.68□□□□□ -0.38
NR1I3-226ENST00000508740 UBTFP17480 764 aaKnown RBP12.66□□□□□ -0.38
NR1I3-226ENST00000508740 GOLGA3Q08378 1498 aa12.65□□□□□ -0.38
NR1I3-226ENST00000508740 KIF27Q86VH2 1401 aa12.65□□□□□ -0.38
NR1I3-226ENST00000508740 FGD5Q6ZNL6 1462 aa12.62□□□□□ -0.39
NR1I3-226ENST00000508740 ZNF608Q9ULD9 1512 aaPredicted RBP12.62□□□□□ -0.39
NR1I3-226ENST00000508740 TOPBP1Q92547 1522 aa12.61□□□□□ -0.39
NR1I3-226ENST00000508740 DNMBPQ6XZF7 1577 aa12.6□□□□□ -0.39
NR1I3-226ENST00000508740 KIF21BO75037 1637 aa12.6□□□□□ -0.39
NR1I3-226ENST00000508740 EIF4G3O43432 1585 aaKnown RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms