RNA–Protein interactions for RNA: ENST00000498212.1

HMGXB4-207, Transcript of HMG-box containing 4, humanhuman

TSL 3

Gene HMGXB4, Length 778 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-207ENST00000498212 NISCHQ9Y2I1 1504 aa20.99■□□□□ 0.95
HMGXB4-207ENST00000498212 AEBP2Q6ZN18 517 aaPredicted RBP19.7■□□□□ 0.74
HMGXB4-207ENST00000498212 CCDC180Q9P1Z9 1646 aa18.84■□□□□ 0.61
HMGXB4-207ENST00000498212 ABCC9O60706 1549 aa18.57■□□□□ 0.56
HMGXB4-207ENST00000498212 CHIC1Q5VXU3 224 aa18.38■□□□□ 0.53
HMGXB4-207ENST00000498212 RB1CC1Q8TDY2 1594 aa17.8■□□□□ 0.44
HMGXB4-207ENST00000498212 NACADO15069 1562 aa17.71■□□□□ 0.43
HMGXB4-207ENST00000498212 DCAF8L2P0C7V8 631 aa17.6■□□□□ 0.41
HMGXB4-207ENST00000498212 MYO15BQ96JP2 1530 aa17.52■□□□□ 0.4
HMGXB4-207ENST00000498212 UNC13AQ9UPW8 1703 aa17.5■□□□□ 0.39
HMGXB4-207ENST00000498212 ZCCHC6Q5VYS8 1495 aaKnown RBP17.45■□□□□ 0.38
HMGXB4-207ENST00000498212 DCAF1Q9Y4B6 1507 aa17.37■□□□□ 0.37
HMGXB4-207ENST00000498212 PABPN1Q86U42 306 aaKnown RBP eCLIP17.27■□□□□ 0.36
HMGXB4-207ENST00000498212 BICRAQ9NZM4 1560 aa17.26■□□□□ 0.35
HMGXB4-207ENST00000498212 DNAJC5BQ9UF47 199 aa17.19■□□□□ 0.34
HMGXB4-207ENST00000498212 SCRIBQ14160 1630 aa17.14■□□□□ 0.33
HMGXB4-207ENST00000498212 SHROOM4Q9ULL8 1493 aa17.05■□□□□ 0.32
HMGXB4-207ENST00000498212 CC2D2AQ9P2K1 1620 aa16.82■□□□□ 0.28
HMGXB4-207ENST00000498212 EIF4G1Q04637 1599 aaKnown RBP16.82■□□□□ 0.28
HMGXB4-207ENST00000498212 SENP3Q9H4L4 574 aaPredicted RBP16.74■□□□□ 0.27
HMGXB4-207ENST00000498212 CECR2Q9BXF3 1484 aa16.7■□□□□ 0.26
HMGXB4-207ENST00000498212 PHF23Q9BUL5 403 aaPredicted RBP16.51■□□□□ 0.23
HMGXB4-207ENST00000498212 SMARCA4P51532 1647 aa16.37■□□□□ 0.21
HMGXB4-207ENST00000498212 BAZ1AQ9NRL2 1556 aaPredicted RBP16.31■□□□□ 0.2
HMGXB4-207ENST00000498212 NCAPD3P42695 1498 aa16.31■□□□□ 0.2
HMGXB4-207ENST00000498212 SMARCA2P51531 1590 aa16.3■□□□□ 0.2
HMGXB4-207ENST00000498212 ATAD2BQ9ULI0 1458 aa16.29■□□□□ 0.2
HMGXB4-207ENST00000498212 HMGXB3Q12766 1538 aa16.25■□□□□ 0.19
HMGXB4-207ENST00000498212 PEG3Q9GZU2 1588 aa16.21■□□□□ 0.18
HMGXB4-207ENST00000498212 MROH2BQ7Z745 1585 aa16.17■□□□□ 0.18
HMGXB4-207ENST00000498212 BAZ1BQ9UIG0 1483 aaKnown RBP16.16■□□□□ 0.18
HMGXB4-207ENST00000498212 WIZO95785 1651 aa16.05■□□□□ 0.16
HMGXB4-207ENST00000498212 ERCC6Q03468 1493 aa16.03■□□□□ 0.16
HMGXB4-207ENST00000498212 NESP48681 1621 aa16.01■□□□□ 0.15
HMGXB4-207ENST00000498212 LAMC3Q9Y6N6 1575 aa15.97■□□□□ 0.15
HMGXB4-207ENST00000498212 CUX2O14529 1486 aa15.94■□□□□ 0.14
HMGXB4-207ENST00000498212 KIF21AQ7Z4S6 1674 aa15.89■□□□□ 0.13
HMGXB4-207ENST00000498212 RSF1Q96T23 1441 aaPredicted RBP15.89■□□□□ 0.13
HMGXB4-207ENST00000498212 THOC2Q8NI27 1593 aaKnown RBP15.85■□□□□ 0.13
HMGXB4-207ENST00000498212 TOP2AP11388 1531 aaKnown RBP15.83■□□□□ 0.12
HMGXB4-207ENST00000498212 PDS5BQ9NTI5 1447 aa15.82■□□□□ 0.12
HMGXB4-207ENST00000498212 CADPSQ9ULU8 1353 aa15.81■□□□□ 0.12
HMGXB4-207ENST00000498212 FOXD1Q16676 465 aa15.7■□□□□ 0.1
HMGXB4-207ENST00000498212 PRDM2Q13029 1718 aa15.7■□□□□ 0.1
HMGXB4-207ENST00000498212 CFTRP13569 1480 aa15.69■□□□□ 0.1
HMGXB4-207ENST00000498212 MRC2Q9UBG0 1479 aa15.69■□□□□ 0.1
HMGXB4-207ENST00000498212 CEP164Q9UPV0 1460 aa15.67■□□□□ 0.1
HMGXB4-207ENST00000498212 DNAJC5Q9H3Z4 198 aa15.66■□□□□ 0.1
HMGXB4-207ENST00000498212 FANCD2Q9BXW9 1451 aa15.65■□□□□ 0.1
HMGXB4-207ENST00000498212 WDR62O43379 1518 aa15.65■□□□□ 0.1
HMGXB4-207ENST00000498212 CCDC88BA6NC98 1476 aa15.61■□□□□ 0.09
HMGXB4-207ENST00000498212 URB2Q14146 1524 aaKnown RBP15.52■□□□□ 0.07
HMGXB4-207ENST00000498212 TOPBP1Q92547 1522 aa15.39■□□□□ 0.05
HMGXB4-207ENST00000498212 ABCC8Q09428 1581 aa15.38■□□□□ 0.05
HMGXB4-207ENST00000498212 DNMBPQ6XZF7 1577 aa15.37■□□□□ 0.05
HMGXB4-207ENST00000498212 IFT140Q96RY7 1462 aa15.34■□□□□ 0.05
HMGXB4-207ENST00000498212 SUPT5HO00267 1087 aaKnown RBP15.31■□□□□ 0.04
HMGXB4-207ENST00000498212 ZNF608Q9ULD9 1512 aaPredicted RBP15.28■□□□□ 0.04
HMGXB4-207ENST00000498212 EIF4G3O43432 1585 aaKnown RBP15.27■□□□□ 0.03
HMGXB4-207ENST00000498212 TARBP1Q13395 1621 aaKnown RBP15.26■□□□□ 0.03
HMGXB4-207ENST00000498212 POLA1P09884 1462 aaPredicted RBP15.24■□□□□ 0.03
HMGXB4-207ENST00000498212 OSCARQ8IYS5 282 aa15.2■□□□□ 0.02
HMGXB4-207ENST00000498212 CUX1P39880 1505 aa15.19■□□□□ 0.02
HMGXB4-207ENST00000498212 FGD5Q6ZNL6 1462 aa15.18■□□□□ 0.02
HMGXB4-207ENST00000498212 RAD54L2Q9Y4B4 1467 aa15.17■□□□□ 0.02
HMGXB4-207ENST00000498212 AQRO60306 1485 aaKnown RBP eCLIP15.16■□□□□ 0.024e-6■□□□□ 10.8
HMGXB4-207ENST00000498212 CHD1O14646 1710 aa15.16■□□□□ 0.02
HMGXB4-207ENST00000498212 SOGA1O94964 1423 aa15.16■□□□□ 0.02
HMGXB4-207ENST00000498212 WDR97A6NE52 1622 aa15.14■□□□□ 0.01
HMGXB4-207ENST00000498212 TDRD9Q8NDG6 1382 aaKnown RBP15.09■□□□□ 0.01
HMGXB4-207ENST00000498212 PBRM1Q86U86 1689 aa15.07■□□□□ 0
HMGXB4-207ENST00000498212 BIVM-ERCC5R4GMW8 1640 aa15.06■□□□□ 0
HMGXB4-207ENST00000498212 TRIM41Q8WV44 630 aa15.06■□□□□ 0
HMGXB4-207ENST00000498212 RIMBP3CA6NJZ7 1639 aa15.06■□□□□ 0
HMGXB4-207ENST00000498212 RIMBP3BA6NNM3 1639 aa15.06■□□□□ 0
HMGXB4-207ENST00000498212 RIMBP3Q9UFD9 1639 aa15.06■□□□□ 0
HMGXB4-207ENST00000498212 SNAPC4Q5SXM2 1469 aa15.04■□□□□ -0
HMGXB4-207ENST00000498212 TOP2BQ02880 1626 aa15.03■□□□□ -0
HMGXB4-207ENST00000498212 SYNJ1O43426 1573 aa15.02□□□□□ -0.01
HMGXB4-207ENST00000498212 ABCA10Q8WWZ4 1543 aa15.02□□□□□ -0.01
HMGXB4-207ENST00000498212 GRIN2BQ13224 1484 aa15.01□□□□□ -0.01
HMGXB4-207ENST00000498212 MAGI1Q96QZ7 1491 aaPredicted RBP15.01□□□□□ -0.01
HMGXB4-207ENST00000498212 FBLN2P98095 1184 aa15.01□□□□□ -0.01
HMGXB4-207ENST00000498212 ABCA5Q8WWZ7 1642 aa15.01□□□□□ -0.01
HMGXB4-207ENST00000498212 WRNQ14191 1432 aaPredicted RBP eCLIP15□□□□□ -0.01
HMGXB4-207ENST00000498212 ARHGEF11O15085 1522 aa15□□□□□ -0.01
HMGXB4-207ENST00000498212 GAPVD1Q14C86 1478 aa15□□□□□ -0.01
HMGXB4-207ENST00000498212 SYNJ2O15056 1496 aa14.95□□□□□ -0.02
HMGXB4-207ENST00000498212 CHMP7Q8WUX9 453 aaPredicted RBP14.94□□□□□ -0.02
HMGXB4-207ENST00000498212 CLASP1Q7Z460 1538 aa14.92□□□□□ -0.02
HMGXB4-207ENST00000498212 POTEDQ86YR6 584 aa14.91□□□□□ -0.02
HMGXB4-207ENST00000498212 ADAMTS12P58397 1594 aa14.88□□□□□ -0.03
HMGXB4-207ENST00000498212 ARAP1Q96P48 1450 aa14.85□□□□□ -0.03
HMGXB4-207ENST00000498212 ERICH3Q5RHP9 1530 aa14.85□□□□□ -0.03
HMGXB4-207ENST00000498212 GRIN2AQ12879 1464 aa14.83□□□□□ -0.03
HMGXB4-207ENST00000498212 CYB5RLQ6IPT4 315 aa14.83□□□□□ -0.04
HMGXB4-207ENST00000498212 FHAD1B1AJZ9 1412 aa14.81□□□□□ -0.04
HMGXB4-207ENST00000498212 CEP170Q5SW79 1584 aa14.79□□□□□ -0.04
HMGXB4-207ENST00000498212 NUP160Q12769 1436 aa14.76□□□□□ -0.05
HMGXB4-207ENST00000498212 SHROOM2Q13796 1616 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms