RNA–Protein interactions for RNA: ENST00000494943.5

PHC3-214, Transcript of polyhomeotic homolog 3, humanhuman

TSL 1 (best) BASIC

Gene PHC3, Length 5,030 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHC3-214ENST00000494943 PELP1Q8IZL8 1130 aaKnown RBP10.64□□□□□ -0.71
PHC3-214ENST00000494943 MYT1Q01538 1121 aa10.6□□□□□ -0.71
PHC3-214ENST00000494943 NISCHQ9Y2I1 1504 aa10.49□□□□□ -0.73
PHC3-214ENST00000494943 TTBK1Q5TCY1 1321 aaPredicted RBP9.95□□□□□ -0.82
PHC3-214ENST00000494943 HRCP23327 699 aa9.87□□□□□ -0.83
PHC3-214ENST00000494943 ZEB1P37275 1124 aaPredicted RBP9.81□□□□□ -0.84
PHC3-214ENST00000494943 CENPBP07199 599 aaPredicted RBP9.67□□□□□ -0.86
PHC3-214ENST00000494943 CCDC180Q9P1Z9 1646 aa9.6□□□□□ -0.87
PHC3-214ENST00000494943 PCGF6Q9BYE7 350 aa9.54□□□□□ -0.88
PHC3-214ENST00000494943 ERICH6Q7L0X2 663 aa9.41□□□□□ -0.9
PHC3-214ENST00000494943 TRIM26Q12899 539 aaPredicted RBP9.38□□□□□ -0.91
PHC3-214ENST00000494943 SUPT5HO00267 1087 aaKnown RBP9.34□□□□□ -0.91
PHC3-214ENST00000494943 DCAF1Q9Y4B6 1507 aa9.3□□□□□ -0.92
PHC3-214ENST00000494943 ACIN1Q9UKV3 1341 aaKnown RBP9.27□□□□□ -0.92
PHC3-214ENST00000494943 PPARGC1BQ86YN6 1023 aaKnown RBP9.27□□□□□ -0.93
PHC3-214ENST00000494943 CLSPNQ9HAW4 1339 aa9.26□□□□□ -0.93
PHC3-214ENST00000494943 CCER1Q8TC90 406 aaPredicted RBP9.26□□□□□ -0.93
PHC3-214ENST00000494943 SCAF1Q9H7N4 1312 aaKnown RBP9.23□□□□□ -0.93
PHC3-214ENST00000494943 GTF3C3Q9Y5Q9 886 aa9.16□□□□□ -0.94
PHC3-214ENST00000494943 MYT1LQ9UL68 1186 aa9.12□□□□□ -0.95
PHC3-214ENST00000494943 SHROOM4Q9ULL8 1493 aa9.11□□□□□ -0.95
PHC3-214ENST00000494943 CHIC1Q5VXU3 224 aa9.08□□□□□ -0.96
PHC3-214ENST00000494943 DIEXFQ68CQ4 756 aaKnown RBP9.06□□□□□ -0.96
PHC3-214ENST00000494943 NEFLP07196 543 aa9.01□□□□□ -0.97
PHC3-214ENST00000494943 BCL11AQ9H165 835 aa9.01□□□□□ -0.97
PHC3-214ENST00000494943 MYO15BQ96JP2 1530 aa9.01□□□□□ -0.97
PHC3-214ENST00000494943 ANP32EQ9BTT0 268 aa9□□□□□ -0.97
PHC3-214ENST00000494943 NEUROD1Q13562 356 aa8.96□□□□□ -0.97
PHC3-214ENST00000494943 YTHDC1Q96MU7 727 aaKnown RBP8.96□□□□□ -0.98
PHC3-214ENST00000494943 ABCC9O60706 1549 aa8.92□□□□□ -0.98
PHC3-214ENST00000494943 UNC13AQ9UPW8 1703 aa8.9□□□□□ -0.98
PHC3-214ENST00000494943 NACADO15069 1562 aa8.87□□□□□ -0.99
PHC3-214ENST00000494943 ZNF316A6NFI3 1004 aaPredicted RBP8.87□□□□□ -0.99
PHC3-214ENST00000494943 RB1CC1Q8TDY2 1594 aa8.82□□□□□ -1
PHC3-214ENST00000494943 ZCCHC6Q5VYS8 1495 aaKnown RBP8.81□□□□□ -1
PHC3-214ENST00000494943 RTL5Q5HYW3 569 aaPredicted RBP8.8□□□□□ -1
PHC3-214ENST00000494943 TRIM41Q8WV44 630 aa8.8□□□□□ -1
PHC3-214ENST00000494943 LOC105371045A0A1W2PR82 267 aa8.76□□□□□ -1.01
PHC3-214ENST00000494943 GLIPR1L2Q4G1C9 344 aa8.75□□□□□ -1.01
PHC3-214ENST00000494943 APLP2Q06481 763 aa8.75□□□□□ -1.01
PHC3-214ENST00000494943 BICRAQ9NZM4 1560 aa8.74□□□□□ -1.01
PHC3-214ENST00000494943 DCAF8L2P0C7V8 631 aa8.72□□□□□ -1.01
PHC3-214ENST00000494943 ERICH6BQ5W0A0 696 aa8.71□□□□□ -1.02
PHC3-214ENST00000494943 CDK11AQ9UQ88 783 aaPredicted RBP8.71□□□□□ -1.02
PHC3-214ENST00000494943 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.7□□□□□ -1.02
PHC3-214ENST00000494943 PRKCSHP14314 528 aaPredicted RBP8.7□□□□□ -1.02
PHC3-214ENST00000494943 FAM9AQ8IZU1 332 aaPredicted RBP8.68□□□□□ -1.02
PHC3-214ENST00000494943 SUPT16HQ9Y5B9 1047 aaKnown RBP8.61□□□□□ -1.03
PHC3-214ENST00000494943 CSRNP3Q8WYN3 585 aa8.61□□□□□ -1.03
PHC3-214ENST00000494943 TSHZ2Q9NRE2 1034 aa8.57□□□□□ -1.04
PHC3-214ENST00000494943 ANP32AP39687 249 aaKnown RBP8.55□□□□□ -1.04
PHC3-214ENST00000494943 DAXXQ9UER7 740 aaPredicted RBP8.54□□□□□ -1.04
PHC3-214ENST00000494943 MIER1Q8N108 512 aa8.54□□□□□ -1.04
PHC3-214ENST00000494943 EHMT2Q96KQ7 1210 aa8.53□□□□□ -1.04
PHC3-214ENST00000494943 FKBP8Q14318 412 aa8.52□□□□□ -1.05
PHC3-214ENST00000494943 BCANQ96GW7 911 aa8.51□□□□□ -1.05
PHC3-214ENST00000494943 DEKP35659 375 aaKnown RBP8.49□□□□□ -1.05
PHC3-214ENST00000494943 EIF5BO60841 1220 aaKnown RBP8.47□□□□□ -1.05
PHC3-214ENST00000494943 FANCIQ9NVI1 1328 aa8.47□□□□□ -1.05
PHC3-214ENST00000494943 RBM19Q9Y4C8 960 aaKnown RBP8.46□□□□□ -1.05
PHC3-214ENST00000494943 ANP32CO43423 234 aa8.45□□□□□ -1.06
PHC3-214ENST00000494943 SLC24A1O60721 1099 aa8.44□□□□□ -1.06
PHC3-214ENST00000494943 UBTFP17480 764 aaKnown RBP8.42□□□□□ -1.06
PHC3-214ENST00000494943 NOP58Q9Y2X3 529 aaKnown RBP8.42□□□□□ -1.06
PHC3-214ENST00000494943 ZBTB47Q9UFB7 747 aaPredicted RBP8.42□□□□□ -1.06
PHC3-214ENST00000494943 PPM1GO15355 546 aaPredicted RBP8.39□□□□□ -1.07
PHC3-214ENST00000494943 HNRNPUL2Q1KMD3 747 aaKnown RBP8.39□□□□□ -1.07
PHC3-214ENST00000494943 UBE2Q2Q8WVN8 375 aa8.38□□□□□ -1.07
PHC3-214ENST00000494943 SCRIBQ14160 1630 aa8.38□□□□□ -1.07
PHC3-214ENST00000494943 RSPH6AQ9H0K4 717 aa8.36□□□□□ -1.07
PHC3-214ENST00000494943 EIF4G1Q04637 1599 aaKnown RBP8.36□□□□□ -1.07
PHC3-214ENST00000494943 DDRGK1Q96HY6 314 aa8.36□□□□□ -1.07
PHC3-214ENST00000494943 NBR1Q14596 966 aa8.35□□□□□ -1.07
PHC3-214ENST00000494943 EEA1Q15075 1411 aa8.34□□□□□ -1.07
PHC3-214ENST00000494943 USP35Q9P2H5 1018 aa8.34□□□□□ -1.08
PHC3-214ENST00000494943 PPP4R2Q9NY27 417 aa8.33□□□□□ -1.08
PHC3-214ENST00000494943 WRNQ14191 1432 aaPredicted RBP eCLIP8.33□□□□□ -1.08
PHC3-214ENST00000494943 CCER2I3L3R5 266 aa8.32□□□□□ -1.08
PHC3-214ENST00000494943 CC2D2AQ9P2K1 1620 aa8.32□□□□□ -1.08
PHC3-214ENST00000494943 PEG3Q9GZU2 1588 aa8.31□□□□□ -1.08
PHC3-214ENST00000494943 DNAJC5BQ9UF47 199 aa8.3□□□□□ -1.08
PHC3-214ENST00000494943 PKNOX2Q96KN3 472 aa8.29□□□□□ -1.08
PHC3-214ENST00000494943 NEFMP07197 916 aa8.28□□□□□ -1.08
PHC3-214ENST00000494943 NCLP19338 710 aaKnown RBP8.26□□□□□ -1.09
PHC3-214ENST00000494943 TNIKQ9UKE5 1360 aa8.26□□□□□ -1.09
PHC3-214ENST00000494943 CEP162Q5TB80 1403 aa8.26□□□□□ -1.09
PHC3-214ENST00000494943 CCDC136Q96JN2 1154 aa8.25□□□□□ -1.09
PHC3-214ENST00000494943 ITGAEP38570 1179 aa8.23□□□□□ -1.09
PHC3-214ENST00000494943 RANGAP1P46060 587 aaPredicted RBP8.22□□□□□ -1.09
PHC3-214ENST00000494943 GOLGA3Q08378 1498 aa8.22□□□□□ -1.09
PHC3-214ENST00000494943 L1TD1Q5T7N2 865 aaKnown RBP8.22□□□□□ -1.09
PHC3-214ENST00000494943 ANO8Q9HCE9 1232 aaPredicted RBP8.22□□□□□ -1.09
PHC3-214ENST00000494943 IPO9Q96P70 1041 aaKnown RBP8.21□□□□□ -1.09
PHC3-214ENST00000494943 HNRNPUQ00839 825 aaKnown RBP eCLIP8.2□□□□□ -1.1
PHC3-214ENST00000494943 TIMELESSQ9UNS1 1208 aa8.2□□□□□ -1.1
PHC3-214ENST00000494943 SMARCA4P51532 1647 aa8.2□□□□□ -1.1
PHC3-214ENST00000494943 HSP90AA1P07900 732 aaKnown RBP8.2□□□□□ -1.1
PHC3-214ENST00000494943 HMGXB3Q12766 1538 aa8.19□□□□□ -1.1
PHC3-214ENST00000494943 TNNT2P45379 298 aaPredicted RBP8.19□□□□□ -1.1
PHC3-214ENST00000494943 RTN4Q9NQC3 1192 aaKnown RBP8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms