RNA–Protein interactions for RNA: ENST00000493415.5

A1CF-210, Transcript of APOBEC1 complementation factor, humanhuman

TSL 5

Gene A1CF, Length 926 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
A1CF-210ENST00000493415 NISCHQ9Y2I1 1504 aa14.69□□□□□ -0.06
A1CF-210ENST00000493415 ABCC9O60706 1549 aa13.65□□□□□ -0.22
A1CF-210ENST00000493415 CCDC180Q9P1Z9 1646 aa13.38□□□□□ -0.27
A1CF-210ENST00000493415 AEBP2Q6ZN18 517 aaPredicted RBP13.27□□□□□ -0.29
A1CF-210ENST00000493415 CHIC1Q5VXU3 224 aa13.09□□□□□ -0.31
A1CF-210ENST00000493415 DNAJC5BQ9UF47 199 aa12.93□□□□□ -0.34
A1CF-210ENST00000493415 RB1CC1Q8TDY2 1594 aa12.87□□□□□ -0.35
A1CF-210ENST00000493415 NACADO15069 1562 aa12.67□□□□□ -0.38
A1CF-210ENST00000493415 UNC13AQ9UPW8 1703 aa12.63□□□□□ -0.39
A1CF-210ENST00000493415 PABPN1Q86U42 306 aaKnown RBP eCLIP12.63□□□□□ -0.39
A1CF-210ENST00000493415 DCAF8L2P0C7V8 631 aa12.6□□□□□ -0.39
A1CF-210ENST00000493415 BICRAQ9NZM4 1560 aa12.44□□□□□ -0.42
A1CF-210ENST00000493415 MYO15BQ96JP2 1530 aa12.32□□□□□ -0.44
A1CF-210ENST00000493415 CC2D2AQ9P2K1 1620 aa12.32□□□□□ -0.44
A1CF-210ENST00000493415 CECR2Q9BXF3 1484 aa12.31□□□□□ -0.44
A1CF-210ENST00000493415 SHROOM4Q9ULL8 1493 aa12.23□□□□□ -0.45
A1CF-210ENST00000493415 SCRIBQ14160 1630 aa12.22□□□□□ -0.45
A1CF-210ENST00000493415 EIF4G1Q04637 1599 aaKnown RBP12.2□□□□□ -0.46
A1CF-210ENST00000493415 ZCCHC6Q5VYS8 1495 aaKnown RBP12.13□□□□□ -0.47
A1CF-210ENST00000493415 DNAJC5Q9H3Z4 198 aa12.09□□□□□ -0.47
A1CF-210ENST00000493415 DCAF1Q9Y4B6 1507 aa12.07□□□□□ -0.48
A1CF-210ENST00000493415 CUX2O14529 1486 aa11.85□□□□□ -0.51
A1CF-210ENST00000493415 ERCC6Q03468 1493 aa11.85□□□□□ -0.51
A1CF-210ENST00000493415 NCAPD3P42695 1498 aa11.63□□□□□ -0.55
A1CF-210ENST00000493415 NESP48681 1621 aa11.62□□□□□ -0.55
A1CF-210ENST00000493415 ATAD2BQ9ULI0 1458 aa11.6□□□□□ -0.55
A1CF-210ENST00000493415 SMARCA2P51531 1590 aa11.59□□□□□ -0.55
A1CF-210ENST00000493415 THOC2Q8NI27 1593 aaKnown RBP11.59□□□□□ -0.55
A1CF-210ENST00000493415 TRIM41Q8WV44 630 aa11.59□□□□□ -0.55
A1CF-210ENST00000493415 HMGXB3Q12766 1538 aa11.59□□□□□ -0.55
A1CF-210ENST00000493415 SMARCA4P51532 1647 aa11.57□□□□□ -0.56
A1CF-210ENST00000493415 KIF21AQ7Z4S6 1674 aa11.54□□□□□ -0.56
A1CF-210ENST00000493415 BAZ1BQ9UIG0 1483 aaKnown RBP11.53□□□□□ -0.56
A1CF-210ENST00000493415 PHF23Q9BUL5 403 aaPredicted RBP11.53□□□□□ -0.56
A1CF-210ENST00000493415 LAMC3Q9Y6N6 1575 aa11.5□□□□□ -0.57
A1CF-210ENST00000493415 BAZ1AQ9NRL2 1556 aaPredicted RBP11.46□□□□□ -0.57
A1CF-210ENST00000493415 PDS5BQ9NTI5 1447 aa11.43□□□□□ -0.58
A1CF-210ENST00000493415 PEG3Q9GZU2 1588 aa11.39□□□□□ -0.59
A1CF-210ENST00000493415 MRC2Q9UBG0 1479 aa11.37□□□□□ -0.59
A1CF-210ENST00000493415 WDR62O43379 1518 aa11.34□□□□□ -0.59
A1CF-210ENST00000493415 MROH2BQ7Z745 1585 aa11.33□□□□□ -0.6
A1CF-210ENST00000493415 CADPSQ9ULU8 1353 aa11.29□□□□□ -0.6
A1CF-210ENST00000493415 CEP164Q9UPV0 1460 aa11.28□□□□□ -0.6
A1CF-210ENST00000493415 WIZO95785 1651 aa11.24□□□□□ -0.61
A1CF-210ENST00000493415 SENP3Q9H4L4 574 aaPredicted RBP11.24□□□□□ -0.61
A1CF-210ENST00000493415 OSCARQ8IYS5 282 aa11.23□□□□□ -0.61
A1CF-210ENST00000493415 FANCD2Q9BXW9 1451 aa11.22□□□□□ -0.61
A1CF-210ENST00000493415 RIMBP3CA6NJZ7 1639 aa11.2□□□□□ -0.62
A1CF-210ENST00000493415 RIMBP3BA6NNM3 1639 aa11.2□□□□□ -0.62
A1CF-210ENST00000493415 RIMBP3Q9UFD9 1639 aa11.2□□□□□ -0.62
A1CF-210ENST00000493415 PRDM2Q13029 1718 aa11.13□□□□□ -0.63
A1CF-210ENST00000493415 URB2Q14146 1524 aaKnown RBP11.13□□□□□ -0.63
A1CF-210ENST00000493415 ARHGEF11O15085 1522 aa11.1□□□□□ -0.63
A1CF-210ENST00000493415 CFTRP13569 1480 aa11.1□□□□□ -0.63
A1CF-210ENST00000493415 TOP2AP11388 1531 aaKnown RBP11.05□□□□□ -0.64
A1CF-210ENST00000493415 TRHP20396 242 aaPredicted RBP11.05□□□□□ -0.64
A1CF-210ENST00000493415 ZNF608Q9ULD9 1512 aaPredicted RBP11.04□□□□□ -0.64
A1CF-210ENST00000493415 CHD1O14646 1710 aa11.04□□□□□ -0.64
A1CF-210ENST00000493415 EIF4G3O43432 1585 aaKnown RBP11.03□□□□□ -0.64
A1CF-210ENST00000493415 IFT140Q96RY7 1462 aa11.03□□□□□ -0.64
A1CF-210ENST00000493415 CYB5RLQ6IPT4 315 aa11.02□□□□□ -0.65
A1CF-210ENST00000493415 POTEDQ86YR6 584 aa10.99□□□□□ -0.65
A1CF-210ENST00000493415 TOPBP1Q92547 1522 aa10.97□□□□□ -0.65
A1CF-210ENST00000493415 ARAP1Q96P48 1450 aa10.96□□□□□ -0.65
A1CF-210ENST00000493415 RSF1Q96T23 1441 aaPredicted RBP10.95□□□□□ -0.66
A1CF-210ENST00000493415 FBLN2P98095 1184 aa10.95□□□□□ -0.66
A1CF-210ENST00000493415 DNMBPQ6XZF7 1577 aa10.93□□□□□ -0.66
A1CF-210ENST00000493415 ABCC8Q09428 1581 aa10.91□□□□□ -0.66
A1CF-210ENST00000493415 AQRO60306 1485 aaKnown RBP eCLIP10.9□□□□□ -0.66
A1CF-210ENST00000493415 CCDC88BA6NC98 1476 aa10.88□□□□□ -0.67
A1CF-210ENST00000493415 TARBP1Q13395 1621 aaKnown RBP10.88□□□□□ -0.67
A1CF-210ENST00000493415 SYNJ1O43426 1573 aa10.84□□□□□ -0.67
A1CF-210ENST00000493415 POLA1P09884 1462 aaPredicted RBP10.83□□□□□ -0.68
A1CF-210ENST00000493415 SNAPC4Q5SXM2 1469 aa10.83□□□□□ -0.68
A1CF-210ENST00000493415 CLASP1Q7Z460 1538 aa10.81□□□□□ -0.68
A1CF-210ENST00000493415 RAD54L2Q9Y4B4 1467 aa10.81□□□□□ -0.68
A1CF-210ENST00000493415 TDRD9Q8NDG6 1382 aaKnown RBP10.78□□□□□ -0.68
A1CF-210ENST00000493415 WDR97A6NE52 1622 aa10.77□□□□□ -0.68
A1CF-210ENST00000493415 SOGA1O94964 1423 aa10.77□□□□□ -0.68
A1CF-210ENST00000493415 PBRM1Q86U86 1689 aa10.77□□□□□ -0.69
A1CF-210ENST00000493415 CHMP7Q8WUX9 453 aaPredicted RBP10.77□□□□□ -0.69
A1CF-210ENST00000493415 FGD5Q6ZNL6 1462 aa10.75□□□□□ -0.69
A1CF-210ENST00000493415 MAGI1Q96QZ7 1491 aaPredicted RBP10.75□□□□□ -0.69
A1CF-210ENST00000493415 GAPVD1Q14C86 1478 aa10.73□□□□□ -0.69
A1CF-210ENST00000493415 SYNJ2O15056 1496 aa10.72□□□□□ -0.69
A1CF-210ENST00000493415 GRIN2BQ13224 1484 aa10.72□□□□□ -0.69
A1CF-210ENST00000493415 PLPPR3Q6T4P5 718 aa10.68□□□□□ -0.7
A1CF-210ENST00000493415 CUX1P39880 1505 aa10.68□□□□□ -0.7
A1CF-210ENST00000493415 ERCC6L2Q5T890 1561 aa10.65□□□□□ -0.71
A1CF-210ENST00000493415 KIF13AQ9H1H9 1805 aa10.63□□□□□ -0.71
A1CF-210ENST00000493415 ABCA5Q8WWZ7 1642 aa10.63□□□□□ -0.71
A1CF-210ENST00000493415 CEP170Q5SW79 1584 aa10.6□□□□□ -0.71
A1CF-210ENST00000493415 GRIN2AQ12879 1464 aa10.59□□□□□ -0.71
A1CF-210ENST00000493415 ADAMTS12P58397 1594 aa10.59□□□□□ -0.71
A1CF-210ENST00000493415 ABCA10Q8WWZ4 1543 aa10.58□□□□□ -0.72
A1CF-210ENST00000493415 SHROOM2Q13796 1616 aa10.55□□□□□ -0.72
A1CF-210ENST00000493415 NUP160Q12769 1436 aa10.53□□□□□ -0.72
A1CF-210ENST00000493415 TSPOAP1O95153 1857 aa10.53□□□□□ -0.72
A1CF-210ENST00000493415 KDM6BO15054 1643 aa10.51□□□□□ -0.73
A1CF-210ENST00000493415 FAM69CQ0P6D2 419 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms