RNA–Protein interactions for RNA: ENST00000488344.6

VAMP7-206, Transcript of vesicle associated membrane protein 7, humanhuman

TSL 2

Gene VAMP7, Length 696 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP7-206ENST00000488344 NISCHQ9Y2I1 1504 aa27.96■■■□□ 2.07
VAMP7-206ENST00000488344 AEBP2Q6ZN18 517 aaPredicted RBP26.67■■□□□ 1.86
VAMP7-206ENST00000488344 CCDC180Q9P1Z9 1646 aa25.07■■□□□ 1.6
VAMP7-206ENST00000488344 ABCC9O60706 1549 aa24.98■■□□□ 1.59
VAMP7-206ENST00000488344 CHIC1Q5VXU3 224 aa24.8■■□□□ 1.56
VAMP7-206ENST00000488344 RB1CC1Q8TDY2 1594 aa23.87■■□□□ 1.41
VAMP7-206ENST00000488344 NACADO15069 1562 aa23.73■■□□□ 1.39
VAMP7-206ENST00000488344 DCAF8L2P0C7V8 631 aa23.56■■□□□ 1.36
VAMP7-206ENST00000488344 MYO15BQ96JP2 1530 aa23.46■■□□□ 1.35
VAMP7-206ENST00000488344 DNAJC5BQ9UF47 199 aa23.3■■□□□ 1.32
VAMP7-206ENST00000488344 PABPN1Q86U42 306 aaKnown RBP eCLIP23.24■■□□□ 1.31
VAMP7-206ENST00000488344 ZCCHC6Q5VYS8 1495 aaKnown RBP23.19■■□□□ 1.3
VAMP7-206ENST00000488344 DCAF1Q9Y4B6 1507 aa23.16■■□□□ 1.3
VAMP7-206ENST00000488344 UNC13AQ9UPW8 1703 aa23.11■■□□□ 1.29
VAMP7-206ENST00000488344 BICRAQ9NZM4 1560 aa23.06■■□□□ 1.28
VAMP7-206ENST00000488344 SHROOM4Q9ULL8 1493 aa22.97■■□□□ 1.27
VAMP7-206ENST00000488344 SCRIBQ14160 1630 aa22.79■■□□□ 1.24
VAMP7-206ENST00000488344 SENP3Q9H4L4 574 aaPredicted RBP22.75■■□□□ 1.23
VAMP7-206ENST00000488344 CC2D2AQ9P2K1 1620 aa22.55■■□□□ 1.2
VAMP7-206ENST00000488344 EIF4G1Q04637 1599 aaKnown RBP22.55■■□□□ 1.2
VAMP7-206ENST00000488344 CECR2Q9BXF3 1484 aa22.54■■□□□ 1.2
VAMP7-206ENST00000488344 PHF23Q9BUL5 403 aaPredicted RBP22.41■■□□□ 1.18
VAMP7-206ENST00000488344 NCAPD3P42695 1498 aa21.9■■□□□ 1.1
VAMP7-206ENST00000488344 ATAD2BQ9ULI0 1458 aa21.81■■□□□ 1.08
VAMP7-206ENST00000488344 SMARCA2P51531 1590 aa21.81■■□□□ 1.08
VAMP7-206ENST00000488344 SMARCA4P51532 1647 aa21.77■■□□□ 1.08
VAMP7-206ENST00000488344 HMGXB3Q12766 1538 aa21.75■■□□□ 1.07
VAMP7-206ENST00000488344 BAZ1AQ9NRL2 1556 aaPredicted RBP21.74■■□□□ 1.07
VAMP7-206ENST00000488344 ERCC6Q03468 1493 aa21.65■■□□□ 1.06
VAMP7-206ENST00000488344 BAZ1BQ9UIG0 1483 aaKnown RBP21.64■■□□□ 1.05
VAMP7-206ENST00000488344 CUX2O14529 1486 aa21.61■■□□□ 1.05
VAMP7-206ENST00000488344 PEG3Q9GZU2 1588 aa21.6■■□□□ 1.05
VAMP7-206ENST00000488344 MROH2BQ7Z745 1585 aa21.49■■□□□ 1.03
VAMP7-206ENST00000488344 DNAJC5Q9H3Z4 198 aa21.47■■□□□ 1.03
VAMP7-206ENST00000488344 NESP48681 1621 aa21.43■■□□□ 1.02
VAMP7-206ENST00000488344 LAMC3Q9Y6N6 1575 aa21.4■■□□□ 1.02
VAMP7-206ENST00000488344 FOXD1Q16676 465 aa21.36■■□□□ 1.01
VAMP7-206ENST00000488344 PDS5BQ9NTI5 1447 aa21.31■■□□□ 1
VAMP7-206ENST00000488344 CADPSQ9ULU8 1353 aa21.24■□□□□ 0.99
VAMP7-206ENST00000488344 THOC2Q8NI27 1593 aaKnown RBP21.23■□□□□ 0.99
VAMP7-206ENST00000488344 WIZO95785 1651 aa21.18■□□□□ 0.98
VAMP7-206ENST00000488344 KIF21AQ7Z4S6 1674 aa21.12■□□□□ 0.97
VAMP7-206ENST00000488344 RSF1Q96T23 1441 aaPredicted RBP21.11■□□□□ 0.97
VAMP7-206ENST00000488344 MRC2Q9UBG0 1479 aa21.09■□□□□ 0.97
VAMP7-206ENST00000488344 TOP2AP11388 1531 aaKnown RBP21.04■□□□□ 0.96
VAMP7-206ENST00000488344 CEP164Q9UPV0 1460 aa21.03■□□□□ 0.96
VAMP7-206ENST00000488344 WDR62O43379 1518 aa21.01■□□□□ 0.95
VAMP7-206ENST00000488344 CFTRP13569 1480 aa21■□□□□ 0.95
VAMP7-206ENST00000488344 FANCD2Q9BXW9 1451 aa20.98■□□□□ 0.95
VAMP7-206ENST00000488344 POTEDQ86YR6 584 aa20.89■□□□□ 0.93
VAMP7-206ENST00000488344 URB2Q14146 1524 aaKnown RBP20.76■□□□□ 0.91
VAMP7-206ENST00000488344 CCDC88BA6NC98 1476 aa20.75■□□□□ 0.91
VAMP7-206ENST00000488344 PRDM2Q13029 1718 aa20.69■□□□□ 0.9
VAMP7-206ENST00000488344 ABCC8Q09428 1581 aa20.63■□□□□ 0.89
VAMP7-206ENST00000488344 IFT140Q96RY7 1462 aa20.62■□□□□ 0.89
VAMP7-206ENST00000488344 OSCARQ8IYS5 282 aa20.61■□□□□ 0.89
VAMP7-206ENST00000488344 TOPBP1Q92547 1522 aa20.58■□□□□ 0.88
VAMP7-206ENST00000488344 TRIM41Q8WV44 630 aa20.54■□□□□ 0.88
VAMP7-206ENST00000488344 DNMBPQ6XZF7 1577 aa20.51■□□□□ 0.87
VAMP7-206ENST00000488344 ZNF608Q9ULD9 1512 aaPredicted RBP20.48■□□□□ 0.87
VAMP7-206ENST00000488344 EIF4G3O43432 1585 aaKnown RBP20.39■□□□□ 0.85
VAMP7-206ENST00000488344 POLA1P09884 1462 aaPredicted RBP20.37■□□□□ 0.85
VAMP7-206ENST00000488344 TARBP1Q13395 1621 aaKnown RBP20.35■□□□□ 0.85
VAMP7-206ENST00000488344 AQRO60306 1485 aaKnown RBP eCLIP20.31■□□□□ 0.842e-6■■■■■ 26.9
VAMP7-206ENST00000488344 SOGA1O94964 1423 aa20.3■□□□□ 0.84
VAMP7-206ENST00000488344 WDR97A6NE52 1622 aa20.26■□□□□ 0.83
VAMP7-206ENST00000488344 FGD5Q6ZNL6 1462 aa20.24■□□□□ 0.83
VAMP7-206ENST00000488344 RAD54L2Q9Y4B4 1467 aa20.24■□□□□ 0.83
VAMP7-206ENST00000488344 RIMBP3CA6NJZ7 1639 aa20.24■□□□□ 0.83
VAMP7-206ENST00000488344 RIMBP3BA6NNM3 1639 aa20.24■□□□□ 0.83
VAMP7-206ENST00000488344 RIMBP3Q9UFD9 1639 aa20.24■□□□□ 0.83
VAMP7-206ENST00000488344 ARHGEF11O15085 1522 aa20.23■□□□□ 0.83
VAMP7-206ENST00000488344 FBLN2P98095 1184 aa20.22■□□□□ 0.83
VAMP7-206ENST00000488344 TDRD9Q8NDG6 1382 aaKnown RBP20.21■□□□□ 0.83
VAMP7-206ENST00000488344 SUPT5HO00267 1087 aaKnown RBP20.2■□□□□ 0.82
VAMP7-206ENST00000488344 CUX1P39880 1505 aa20.2■□□□□ 0.82
VAMP7-206ENST00000488344 CHD1O14646 1710 aa20.16■□□□□ 0.82
VAMP7-206ENST00000488344 MSH5O43196 834 aa20.15■□□□□ 0.82
VAMP7-206ENST00000488344 SNAPC4Q5SXM2 1469 aa20.15■□□□□ 0.82
VAMP7-206ENST00000488344 MAGI1Q96QZ7 1491 aaPredicted RBP20.15■□□□□ 0.82
VAMP7-206ENST00000488344 GRIN2BQ13224 1484 aa20.14■□□□□ 0.81
VAMP7-206ENST00000488344 CHMP7Q8WUX9 453 aaPredicted RBP20.11■□□□□ 0.81
VAMP7-206ENST00000488344 CYB5RLQ6IPT4 315 aa20.08■□□□□ 0.81
VAMP7-206ENST00000488344 SYNJ2O15056 1496 aa20.06■□□□□ 0.8
VAMP7-206ENST00000488344 GAPVD1Q14C86 1478 aa20.05■□□□□ 0.8
VAMP7-206ENST00000488344 SYNJ1O43426 1573 aa20.05■□□□□ 0.8
VAMP7-206ENST00000488344 ABCA10Q8WWZ4 1543 aa20.05■□□□□ 0.8
VAMP7-206ENST00000488344 ARAP1Q96P48 1450 aa20.02■□□□□ 0.8
VAMP7-206ENST00000488344 WRNQ14191 1432 aaPredicted RBP eCLIP20.02■□□□□ 0.79
VAMP7-206ENST00000488344 CLASP1Q7Z460 1538 aa20.01■□□□□ 0.79
VAMP7-206ENST00000488344 ABCA5Q8WWZ7 1642 aa19.96■□□□□ 0.79
VAMP7-206ENST00000488344 PBRM1Q86U86 1689 aa19.94■□□□□ 0.78
VAMP7-206ENST00000488344 TOP2BQ02880 1626 aa19.92■□□□□ 0.78
VAMP7-206ENST00000488344 BIVM-ERCC5R4GMW8 1640 aa19.9■□□□□ 0.78
VAMP7-206ENST00000488344 TRHP20396 242 aaPredicted RBP19.87■□□□□ 0.77
VAMP7-206ENST00000488344 GRIN2AQ12879 1464 aa19.86■□□□□ 0.77
VAMP7-206ENST00000488344 FHAD1B1AJZ9 1412 aa19.84■□□□□ 0.77
VAMP7-206ENST00000488344 ADAMTS12P58397 1594 aa19.83■□□□□ 0.76
VAMP7-206ENST00000488344 ERICH3Q5RHP9 1530 aa19.81■□□□□ 0.76
VAMP7-206ENST00000488344 NUP160Q12769 1436 aa19.79■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms