RNA–Protein interactions for RNA: ENST00000488146.5

DEPDC1-203, Transcript of DEP domain containing 1, humanhuman

TSL 2

Gene DEPDC1, Length 2,658 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-203ENST00000488146 AEBP2Q6ZN18 517 aaPredicted RBP8.67□□□□□ -1.02
DEPDC1-203ENST00000488146 CHIC1Q5VXU3 224 aa8.21□□□□□ -1.09
DEPDC1-203ENST00000488146 POTEDQ86YR6 584 aa7.58□□□□□ -1.2
DEPDC1-203ENST00000488146 SENP3Q9H4L4 574 aaPredicted RBP7.42□□□□□ -1.22
DEPDC1-203ENST00000488146 PHF23Q9BUL5 403 aaPredicted RBP7.31□□□□□ -1.24
DEPDC1-203ENST00000488146 NISCHQ9Y2I1 1504 aa7.25□□□□□ -1.25
DEPDC1-203ENST00000488146 FOXD1Q16676 465 aa6.91□□□□□ -1.3
DEPDC1-203ENST00000488146 CCDC180Q9P1Z9 1646 aa6.82□□□□□ -1.32
DEPDC1-203ENST00000488146 PLPPR3Q6T4P5 718 aa6.55□□□□□ -1.36
DEPDC1-203ENST00000488146 MSH5O43196 834 aa6.5□□□□□ -1.37
DEPDC1-203ENST00000488146 MYO15BQ96JP2 1530 aa6.46□□□□□ -1.37
DEPDC1-203ENST00000488146 PIAS4Q8N2W9 510 aaPredicted RBP6.46□□□□□ -1.37
DEPDC1-203ENST00000488146 SHROOM4Q9ULL8 1493 aa6.43□□□□□ -1.38
DEPDC1-203ENST00000488146 PPP6R1Q9UPN7 881 aa6.42□□□□□ -1.38
DEPDC1-203ENST00000488146 ADRA2BP18089 450 aa6.41□□□□□ -1.38
DEPDC1-203ENST00000488146 NACADO15069 1562 aa6.38□□□□□ -1.39
DEPDC1-203ENST00000488146 RB1CC1Q8TDY2 1594 aa6.37□□□□□ -1.39
DEPDC1-203ENST00000488146 ABCC9O60706 1549 aa6.34□□□□□ -1.39
DEPDC1-203ENST00000488146 DCAF1Q9Y4B6 1507 aa6.28□□□□□ -1.4
DEPDC1-203ENST00000488146 UNC13AQ9UPW8 1703 aa6.13□□□□□ -1.43
DEPDC1-203ENST00000488146 BICRAQ9NZM4 1560 aa6.1□□□□□ -1.43
DEPDC1-203ENST00000488146 ZCCHC6Q5VYS8 1495 aaKnown RBP6.05□□□□□ -1.44
DEPDC1-203ENST00000488146 EHMT2Q96KQ7 1210 aa5.94□□□□□ -1.46
DEPDC1-203ENST00000488146 EIF4G1Q04637 1599 aaKnown RBP5.94□□□□□ -1.46
DEPDC1-203ENST00000488146 CC2D2AQ9P2K1 1620 aa5.92□□□□□ -1.46
DEPDC1-203ENST00000488146 KCNA4P22459 653 aa5.91□□□□□ -1.46
DEPDC1-203ENST00000488146 CUX2O14529 1486 aa5.9□□□□□ -1.46
DEPDC1-203ENST00000488146 MAPK8IP2Q13387 824 aaPredicted RBP5.9□□□□□ -1.47
DEPDC1-203ENST00000488146 DNAJC5BQ9UF47 199 aa5.9□□□□□ -1.47
DEPDC1-203ENST00000488146 SCAF1Q9H7N4 1312 aaKnown RBP5.88□□□□□ -1.47
DEPDC1-203ENST00000488146 DMRT2Q9Y5R5 561 aa5.87□□□□□ -1.47
DEPDC1-203ENST00000488146 CECR2Q9BXF3 1484 aa5.87□□□□□ -1.47
DEPDC1-203ENST00000488146 HMGXB3Q12766 1538 aa5.85□□□□□ -1.47
DEPDC1-203ENST00000488146 SMARCA2P51531 1590 aa5.85□□□□□ -1.47
DEPDC1-203ENST00000488146 PEG3Q9GZU2 1588 aa5.83□□□□□ -1.48
DEPDC1-203ENST00000488146 NCAPD3P42695 1498 aa5.81□□□□□ -1.48
DEPDC1-203ENST00000488146 SCRIBQ14160 1630 aa5.77□□□□□ -1.49
DEPDC1-203ENST00000488146 PPP4R3CPQ6ZMV5 832 aa5.74□□□□□ -1.49
DEPDC1-203ENST00000488146 LAMC3Q9Y6N6 1575 aa5.74□□□□□ -1.49
DEPDC1-203ENST00000488146 DNAJC5Q9H3Z4 198 aa5.71□□□□□ -1.5
DEPDC1-203ENST00000488146 PABPN1Q86U42 306 aaKnown RBP eCLIP5.7□□□□□ -1.5
DEPDC1-203ENST00000488146 BAZ1AQ9NRL2 1556 aaPredicted RBP5.7□□□□□ -1.5
DEPDC1-203ENST00000488146 SMARCA4P51532 1647 aa5.69□□□□□ -1.5
DEPDC1-203ENST00000488146 THOC2Q8NI27 1593 aaKnown RBP5.69□□□□□ -1.5
DEPDC1-203ENST00000488146 ATAD2BQ9ULI0 1458 aa5.67□□□□□ -1.5
DEPDC1-203ENST00000488146 DCAF8L1A6NGE4 600 aa5.66□□□□□ -1.5
DEPDC1-203ENST00000488146 POTEHQ6S545 545 aa5.64□□□□□ -1.51
DEPDC1-203ENST00000488146 CNKSR2Q8WXI2 1034 aa5.64□□□□□ -1.51
DEPDC1-203ENST00000488146 HOXD11P31277 338 aaPredicted RBP5.64□□□□□ -1.51
DEPDC1-203ENST00000488146 WDR97A6NE52 1622 aa5.63□□□□□ -1.51
DEPDC1-203ENST00000488146 WDR62O43379 1518 aa5.63□□□□□ -1.51
DEPDC1-203ENST00000488146 PRDM2Q13029 1718 aa5.63□□□□□ -1.51
DEPDC1-203ENST00000488146 CSRNP3Q8WYN3 585 aa5.62□□□□□ -1.51
DEPDC1-203ENST00000488146 CACNB1Q02641 598 aaPredicted RBP5.6□□□□□ -1.51
DEPDC1-203ENST00000488146 SLC4A1APQ9BWU0 796 aaKnown RBP5.6□□□□□ -1.51
DEPDC1-203ENST00000488146 RNF216Q9NWF9 866 aaPredicted RBP5.6□□□□□ -1.51
DEPDC1-203ENST00000488146 PDS5BQ9NTI5 1447 aa5.6□□□□□ -1.51
DEPDC1-203ENST00000488146 BAZ1BQ9UIG0 1483 aaKnown RBP5.58□□□□□ -1.52
DEPDC1-203ENST00000488146 ERCC6Q03468 1493 aa5.57□□□□□ -1.52
DEPDC1-203ENST00000488146 MRC2Q9UBG0 1479 aa5.57□□□□□ -1.52
DEPDC1-203ENST00000488146 ABCC8Q09428 1581 aa5.53□□□□□ -1.52
DEPDC1-203ENST00000488146 RNF39Q9H2S5 420 aa5.52□□□□□ -1.53
DEPDC1-203ENST00000488146 KIF21AQ7Z4S6 1674 aa5.52□□□□□ -1.53
DEPDC1-203ENST00000488146 NCBP3Q53F19 620 aaKnown RBP5.51□□□□□ -1.53
DEPDC1-203ENST00000488146 CADPSQ9ULU8 1353 aa5.51□□□□□ -1.53
DEPDC1-203ENST00000488146 NPM3O75607 178 aaKnown RBP5.5□□□□□ -1.53
DEPDC1-203ENST00000488146 CFTRP13569 1480 aa5.49□□□□□ -1.53
DEPDC1-203ENST00000488146 TOP2AP11388 1531 aaKnown RBP5.49□□□□□ -1.53
DEPDC1-203ENST00000488146 DCAF8L2P0C7V8 631 aa5.49□□□□□ -1.53
DEPDC1-203ENST00000488146 CEP164Q9UPV0 1460 aa5.48□□□□□ -1.53
DEPDC1-203ENST00000488146 ZBTB22O15209 634 aa5.47□□□□□ -1.53
DEPDC1-203ENST00000488146 IFT140Q96RY7 1462 aa5.45□□□□□ -1.54
DEPDC1-203ENST00000488146 C1QBPQ07021 282 aaKnown RBP5.45□□□□□ -1.54
DEPDC1-203ENST00000488146 MROH2BQ7Z745 1585 aa5.44□□□□□ -1.54
DEPDC1-203ENST00000488146 RSF1Q96T23 1441 aaPredicted RBP5.43□□□□□ -1.54
DEPDC1-203ENST00000488146 FANCD2Q9BXW9 1451 aa5.41□□□□□ -1.54
DEPDC1-203ENST00000488146 NESP48681 1621 aa5.41□□□□□ -1.54
DEPDC1-203ENST00000488146 DNMBPQ6XZF7 1577 aa5.41□□□□□ -1.54
DEPDC1-203ENST00000488146 GRWD1Q9BQ67 446 aaKnown RBP eCLIP5.39□□□□□ -1.55
DEPDC1-203ENST00000488146 URB2Q14146 1524 aaKnown RBP5.37□□□□□ -1.55
DEPDC1-203ENST00000488146 TARBP1Q13395 1621 aaKnown RBP5.36□□□□□ -1.55
DEPDC1-203ENST00000488146 RIMBP3CA6NJZ7 1639 aa5.36□□□□□ -1.55
DEPDC1-203ENST00000488146 RIMBP3BA6NNM3 1639 aa5.36□□□□□ -1.55
DEPDC1-203ENST00000488146 RIMBP3Q9UFD9 1639 aa5.36□□□□□ -1.55
DEPDC1-203ENST00000488146 CLASP1Q7Z460 1538 aa5.36□□□□□ -1.55
DEPDC1-203ENST00000488146 WIZO95785 1651 aa5.35□□□□□ -1.55
DEPDC1-203ENST00000488146 MAGI1Q96QZ7 1491 aaPredicted RBP5.34□□□□□ -1.55
DEPDC1-203ENST00000488146 EIF4G3O43432 1585 aaKnown RBP5.34□□□□□ -1.56
DEPDC1-203ENST00000488146 TOPBP1Q92547 1522 aa5.33□□□□□ -1.56
DEPDC1-203ENST00000488146 SYNJ1O43426 1573 aa5.32□□□□□ -1.56
DEPDC1-203ENST00000488146 ARHGEF11O15085 1522 aa5.31□□□□□ -1.56
DEPDC1-203ENST00000488146 OSCARQ8IYS5 282 aa5.3□□□□□ -1.56
DEPDC1-203ENST00000488146 PLSCR2Q9NRY7 297 aa5.3□□□□□ -1.56
DEPDC1-203ENST00000488146 SHROOM2Q13796 1616 aa5.29□□□□□ -1.56
DEPDC1-203ENST00000488146 CHD1O14646 1710 aa5.29□□□□□ -1.56
DEPDC1-203ENST00000488146 ABCA5Q8WWZ7 1642 aa5.27□□□□□ -1.57
DEPDC1-203ENST00000488146 U3KPZ7 1027 aaPredicted RBP5.26□□□□□ -1.57
DEPDC1-203ENST00000488146 PBRM1Q86U86 1689 aa5.25□□□□□ -1.57
DEPDC1-203ENST00000488146 CCDC88BA6NC98 1476 aa5.25□□□□□ -1.57
DEPDC1-203ENST00000488146 SYNJ2O15056 1496 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 177.5 ms