RNA–Protein interactions for RNA: ENST00000482310.5

HDAC1-208, Transcript of histone deacetylase 1, humanhuman

TSL 5

Gene HDAC1, Length 779 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-208ENST00000482310 NISCHQ9Y2I1 1504 aa31.42■■■□□ 2.62
HDAC1-208ENST00000482310 CCDC180Q9P1Z9 1646 aa27.84■■■□□ 2.05
HDAC1-208ENST00000482310 ABCC9O60706 1549 aa27.14■■□□□ 1.94
HDAC1-208ENST00000482310 ZCCHC6Q5VYS8 1495 aaKnown RBP26.26■■□□□ 1.79
HDAC1-208ENST00000482310 DCAF8L2P0C7V8 631 aa26.22■■□□□ 1.79
HDAC1-208ENST00000482310 NACADO15069 1562 aa25.99■■□□□ 1.75
HDAC1-208ENST00000482310 RB1CC1Q8TDY2 1594 aa25.99■■□□□ 1.75
HDAC1-208ENST00000482310 DCAF1Q9Y4B6 1507 aa25.92■■□□□ 1.74
HDAC1-208ENST00000482310 MYO15BQ96JP2 1530 aa25.84■■□□□ 1.73
HDAC1-208ENST00000482310 DNAJC5BQ9UF47 199 aa25.78■■□□□ 1.72
HDAC1-208ENST00000482310 UNC13AQ9UPW8 1703 aa25.62■■□□□ 1.69
HDAC1-208ENST00000482310 SCRIBQ14160 1630 aa25.55■■□□□ 1.68
HDAC1-208ENST00000482310 PABPN1Q86U42 306 aaKnown RBP eCLIP25.26■■□□□ 1.63
HDAC1-208ENST00000482310 SHROOM4Q9ULL8 1493 aa25.24■■□□□ 1.63
HDAC1-208ENST00000482310 BICRAQ9NZM4 1560 aa25.21■■□□□ 1.63
HDAC1-208ENST00000482310 EIF4G1Q04637 1599 aaKnown RBP24.51■■□□□ 1.51
HDAC1-208ENST00000482310 CC2D2AQ9P2K1 1620 aa24.5■■□□□ 1.51
HDAC1-208ENST00000482310 CECR2Q9BXF3 1484 aa24.49■■□□□ 1.51
HDAC1-208ENST00000482310 SMARCA4P51532 1647 aa24.39■■□□□ 1.49
HDAC1-208ENST00000482310 BAZ1AQ9NRL2 1556 aaPredicted RBP24.34■■□□□ 1.49
HDAC1-208ENST00000482310 MROH2BQ7Z745 1585 aa24.28■■□□□ 1.48
HDAC1-208ENST00000482310 WIZO95785 1651 aa24.14■■□□□ 1.45
HDAC1-208ENST00000482310 RSF1Q96T23 1441 aaPredicted RBP24.07■■□□□ 1.44
HDAC1-208ENST00000482310 SMARCA2P51531 1590 aa24.07■■□□□ 1.44
HDAC1-208ENST00000482310 ATAD2BQ9ULI0 1458 aa24.06■■□□□ 1.44
HDAC1-208ENST00000482310 PEG3Q9GZU2 1588 aa24.02■■□□□ 1.44
HDAC1-208ENST00000482310 BAZ1BQ9UIG0 1483 aaKnown RBP23.94■■□□□ 1.42
HDAC1-208ENST00000482310 NCAPD3P42695 1498 aa23.92■■□□□ 1.42
HDAC1-208ENST00000482310 HMGXB3Q12766 1538 aa23.91■■□□□ 1.42
HDAC1-208ENST00000482310 SUPT5HO00267 1087 aaKnown RBP23.87■■□□□ 1.41
HDAC1-208ENST00000482310 TOP2AP11388 1531 aaKnown RBP23.79■■□□□ 1.4
HDAC1-208ENST00000482310 DNAJC5Q9H3Z4 198 aa23.67■■□□□ 1.38
HDAC1-208ENST00000482310 CCDC88BA6NC98 1476 aa23.49■■□□□ 1.35
HDAC1-208ENST00000482310 NESP48681 1621 aa23.41■■□□□ 1.34
HDAC1-208ENST00000482310 CUX2O14529 1486 aa23.37■■□□□ 1.33
HDAC1-208ENST00000482310 LAMC3Q9Y6N6 1575 aa23.33■■□□□ 1.33
HDAC1-208ENST00000482310 ERCC6Q03468 1493 aa23.33■■□□□ 1.33
HDAC1-208ENST00000482310 PRDM2Q13029 1718 aa23.33■■□□□ 1.32
HDAC1-208ENST00000482310 CADPSQ9ULU8 1353 aa23.27■■□□□ 1.32
HDAC1-208ENST00000482310 KIF21AQ7Z4S6 1674 aa23.25■■□□□ 1.31
HDAC1-208ENST00000482310 CFTRP13569 1480 aa23.22■■□□□ 1.31
HDAC1-208ENST00000482310 PDS5BQ9NTI5 1447 aa23.1■■□□□ 1.29
HDAC1-208ENST00000482310 FANCD2Q9BXW9 1451 aa23.09■■□□□ 1.29
HDAC1-208ENST00000482310 THOC2Q8NI27 1593 aaKnown RBP23.07■■□□□ 1.28
HDAC1-208ENST00000482310 CEP164Q9UPV0 1460 aa23.04■■□□□ 1.28
HDAC1-208ENST00000482310 MRC2Q9UBG0 1479 aa22.9■■□□□ 1.26
HDAC1-208ENST00000482310 ABCC8Q09428 1581 aa22.89■■□□□ 1.25
HDAC1-208ENST00000482310 URB2Q14146 1524 aaKnown RBP22.85■■□□□ 1.25
HDAC1-208ENST00000482310 WDR62O43379 1518 aa22.82■■□□□ 1.24
HDAC1-208ENST00000482310 DNMBPQ6XZF7 1577 aa22.79■■□□□ 1.24
HDAC1-208ENST00000482310 CUX1P39880 1505 aa22.77■■□□□ 1.24
HDAC1-208ENST00000482310 TOPBP1Q92547 1522 aa22.77■■□□□ 1.24
HDAC1-208ENST00000482310 SYNJ1O43426 1573 aa22.73■■□□□ 1.23
HDAC1-208ENST00000482310 WRNQ14191 1432 aaPredicted RBP eCLIP22.71■■□□□ 1.23
HDAC1-208ENST00000482310 BIVM-ERCC5R4GMW8 1640 aa22.69■■□□□ 1.22
HDAC1-208ENST00000482310 TOP2BQ02880 1626 aa22.66■■□□□ 1.22
HDAC1-208ENST00000482310 FGD5Q6ZNL6 1462 aa22.62■■□□□ 1.21
HDAC1-208ENST00000482310 POLA1P09884 1462 aaPredicted RBP22.59■■□□□ 1.21
HDAC1-208ENST00000482310 RAD54L2Q9Y4B4 1467 aa22.54■■□□□ 1.2
HDAC1-208ENST00000482310 TRIM41Q8WV44 630 aa22.52■■□□□ 1.2
HDAC1-208ENST00000482310 TARBP1Q13395 1621 aaKnown RBP22.52■■□□□ 1.2
HDAC1-208ENST00000482310 WDR97A6NE52 1622 aa22.49■■□□□ 1.19
HDAC1-208ENST00000482310 SOGA1O94964 1423 aa22.48■■□□□ 1.19
HDAC1-208ENST00000482310 IFT140Q96RY7 1462 aa22.47■■□□□ 1.19
HDAC1-208ENST00000482310 ZNF608Q9ULD9 1512 aaPredicted RBP22.42■■□□□ 1.18
HDAC1-208ENST00000482310 EIF4G3O43432 1585 aaKnown RBP22.42■■□□□ 1.18
HDAC1-208ENST00000482310 CHIC1Q5VXU3 224 aa22.4■■□□□ 1.18
HDAC1-208ENST00000482310 ABCA10Q8WWZ4 1543 aa22.36■■□□□ 1.17
HDAC1-208ENST00000482310 PBRM1Q86U86 1689 aa22.36■■□□□ 1.17
HDAC1-208ENST00000482310 AQRO60306 1485 aaKnown RBP eCLIP22.34■■□□□ 1.172e-8■■■■■ 33.4
HDAC1-208ENST00000482310 TDRD9Q8NDG6 1382 aaKnown RBP22.33■■□□□ 1.17
HDAC1-208ENST00000482310 ABCA5Q8WWZ7 1642 aa22.31■■□□□ 1.16
HDAC1-208ENST00000482310 OSCARQ8IYS5 282 aa22.28■■□□□ 1.16
HDAC1-208ENST00000482310 GAPVD1Q14C86 1478 aa22.25■■□□□ 1.15
HDAC1-208ENST00000482310 RUSC2Q8N2Y8 1516 aa22.2■■□□□ 1.14
HDAC1-208ENST00000482310 KIF27Q86VH2 1401 aa22.18■■□□□ 1.14
HDAC1-208ENST00000482310 GRIN2BQ13224 1484 aa22.16■■□□□ 1.14
HDAC1-208ENST00000482310 SNAPC4Q5SXM2 1469 aa22.16■■□□□ 1.14
HDAC1-208ENST00000482310 CHD1O14646 1710 aa22.15■■□□□ 1.14
HDAC1-208ENST00000482310 FAM9AQ8IZU1 332 aaPredicted RBP22.1■■□□□ 1.13
HDAC1-208ENST00000482310 ERICH3Q5RHP9 1530 aa22.1■■□□□ 1.13
HDAC1-208ENST00000482310 RIMBP3CA6NJZ7 1639 aa22.09■■□□□ 1.13
HDAC1-208ENST00000482310 RIMBP3BA6NNM3 1639 aa22.09■■□□□ 1.13
HDAC1-208ENST00000482310 RIMBP3Q9UFD9 1639 aa22.09■■□□□ 1.13
HDAC1-208ENST00000482310 ADAMTS12P58397 1594 aa22.09■■□□□ 1.13
HDAC1-208ENST00000482310 MAGI1Q96QZ7 1491 aaPredicted RBP22.06■■□□□ 1.12
HDAC1-208ENST00000482310 CUL7Q14999 1698 aa22.06■■□□□ 1.12
HDAC1-208ENST00000482310 FBLN2P98095 1184 aa22.03■■□□□ 1.12
HDAC1-208ENST00000482310 IGF1RP08069 1367 aa22■■□□□ 1.11
HDAC1-208ENST00000482310 ARHGEF11O15085 1522 aa21.99■■□□□ 1.11
HDAC1-208ENST00000482310 SYNJ2O15056 1496 aa21.97■■□□□ 1.11
HDAC1-208ENST00000482310 FHAD1B1AJZ9 1412 aa21.96■■□□□ 1.11
HDAC1-208ENST00000482310 EEA1Q15075 1411 aa21.96■■□□□ 1.11
HDAC1-208ENST00000482310 CHMP7Q8WUX9 453 aaPredicted RBP21.95■■□□□ 1.1
HDAC1-208ENST00000482310 CARMIL1Q5VZK9 1371 aa21.92■■□□□ 1.1
HDAC1-208ENST00000482310 GRIN2AQ12879 1464 aa21.91■■□□□ 1.1
HDAC1-208ENST00000482310 CSRNP3Q8WYN3 585 aa21.9■■□□□ 1.1
HDAC1-208ENST00000482310 EHMT2Q96KQ7 1210 aa21.9■■□□□ 1.1
HDAC1-208ENST00000482310 CEP170Q5SW79 1584 aa21.86■■□□□ 1.09
HDAC1-208ENST00000482310 RAPGEF2Q9Y4G8 1499 aa21.85■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms